Cryo-EM structure of the SFV009 3G01 Fab in complex with A/California/04/2009
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 9dm0
Q-score: 0.511
Lin TH, Lee CD, Fernandez-Quintero ML, Ferguson JA, Han J, Zhu X, Yu W, Guthmiller JJ, Krammer F, Wilson PC, Ward AB, Wilson IA
Nat Commun (2025) 16 pp. 1268-1268 [ DOI: doi:10.1038/s41467-025-56496-4 Pubmed: 39894881 ]
- Hemagglutinin (35 kDa, Protein from Influenza A virus (A/California/04/2009(H1N1)))
- Hemagglutinin ha1/2 (Complex)
- Fab (Complex)
- Fab light chain (11 kDa, Protein from Homo sapiens)
- Hemagglutinin ca09 homotrimer bound to anchor fab (Complex from Homo sapiens)
- Hemagglutinin (26 kDa, Protein from Influenza A virus (A/California/04/2009(H1N1)))
- Fab heavy chain (13 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV 16055.v8.3 SOSIP Env in Complex with V2 Epitope and Anti-Immune Complex pAbs from Rabbit 2464
Brown S, Antanasijevic A, Sewall LM, Garcia DM, Brouwer PJM, Sanders RW, Ward AB
Sci Immunol (2025) 10 pp. eadp5218-eadp5218 [ Pubmed: 39823319 DOI: doi:10.1126/sciimmunol.adp5218 ]
- Rabbit anti-immune complex antibody - predicted light chain (9 kDa, Protein from Oryctolagus cuniculus)
- Rabbit v2 polyclonal antibody - predicted light chain (9 kDa, Protein from Oryctolagus cuniculus)
- Rabbit v2 polyclonal antibody - predicted heavy chain (10 kDa, Protein from Oryctolagus cuniculus)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Surface protein gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 16055 sosip env in complex with rabbit polyclonal antibodies - v2 epitope and anti-immune complex pabs (Complex from Oryctolagus cuniculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rabbit anti-immune complex antibody - predicted heavy chain (9 kDa, Protein from Oryctolagus cuniculus)
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with gp120-Interface pAb from Rh.33203
Brown S, Antanasijevic A, Sewall LM, Garcia DM, Brouwer PJM, Sanders RW, Ward AB
Sci Immunol (2025) 10 pp. eadp5218-eadp5218 [ Pubmed: 39823319 DOI: doi:10.1126/sciimmunol.adp5218 ]
- Hiv-1 bg505 sosip env in complex with nhp polyclonal antibody - gp120-interface epitope (Complex from Macaca mulatta)
- Gp120-interface polyclonal antibody - predicted light chain (8 kDa, Protein from Macaca mulatta)
- Gp120-interface polyclonal antibody - predicted heavy chain (9 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Surface protein gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
HIV 16055.v8.3 SOSIP Env in Complex with Base and N625 Epitope pAbs from Rabbit 2463
Brown S, Antanasijevic A, Sewall LM, Garcia DM, Brouwer PJM, Sanders RW, Ward AB
Sci Immunol (2025) 10 pp. eadp5218-eadp5218 [ Pubmed: 39823319 DOI: doi:10.1126/sciimmunol.adp5218 ]
- Rabbit polyclonal antibody n625 epitope - predicted heavy chain (10 kDa, Protein from Oryctolagus cuniculus)
- Alpha-d-mannopyranose (180 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Rabbit polyclonal antibody base epitope - predicted light chain (9 kDa, Protein from Oryctolagus cuniculus)
- Surface protein gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- Rabbit polyclonal antibody base epitope - predicted heavy chain (10 kDa, Protein from Oryctolagus cuniculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Rabbit polyclonal antibody n625 epitope - predicted light chain (9 kDa, Protein from Oryctolagus cuniculus)
- Hiv 16055 sosip env in complex with base and n625 epitope polyclonal antibodies (Complex from Oryctolagus cuniculus)
HIV 16055.v8.3 SOSIP Env in Complex with Base and N611 Epitope pAbs from Rabbit 2463
Brown S, Antanasijevic A, Sewall LM, Garcia DM, Brouwer PJM, Sanders RW, Ward AB
Sci Immunol (2025) 10 pp. eadp5218-eadp5218 [ Pubmed: 39823319 DOI: doi:10.1126/sciimmunol.adp5218 ]
- Rabbit n611 epitope polyclonal antibody - predicted light chain (8 kDa, Protein from Oryctolagus cuniculus)
- Rabbit n611 epitope polyclonal antibody - predicted heavy chain (9 kDa, Protein from Oryctolagus cuniculus)
- Rabbit base epitope polyclonal antibody - predicted light chain (9 kDa, Protein from Oryctolagus cuniculus)
- Rabbit base epitope polyclonal antibody - predicted heavy chain (10 kDa, Protein from Oryctolagus cuniculus)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Hiv-1 16055 sosip env in complex with rabbit polyclonal antibodies - base and n611 pabs (Complex from Oryctolagus cuniculus)
- Surface protein gp120 (58 kDa, Protein from Human immunodeficiency virus 1)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
HIV BG505.v5.2 (N289/N241) SOSIP Env in Complex with V5 pAb from Rh.33203
Brown S, Antanasijevic A, Sewall LM, Garcia DM, Brouwer PJM, Sanders RW, Ward AB
Sci Immunol (2025) 10 pp. eadp5218-eadp5218 [ Pubmed: 39823319 DOI: doi:10.1126/sciimmunol.adp5218 ]
- Hiv-1 bg505 sosip env in complex with nhp polyclonal antibody - v5 epitope (Complex from Macaca mulatta)
- Nhp polyclonal antibody v5 epitope - predicted light chain (8 kDa, Protein from Macaca mulatta)
- Nhp polyclonal antibody v5 epitope - predicted heavy chain (9 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Surface protein gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
Brown S, Antanasijevic A, Sewall LM, Garcia DM, Brouwer PJM, Sanders RW, Ward AB
Sci Immunol (2025) 10 pp. eadp5218-eadp5218 [ Pubmed: 39823319 DOI: doi:10.1126/sciimmunol.adp5218 ]
- Nhp v5 epitope pab - predicted light chain (8 kDa, Protein from Macaca mulatta)
- Nhp v5 epitope pab - predicted heavy chain (9 kDa, Protein from Macaca mulatta)
- Hiv-1 bg505 sosip env in complex with nhp polyclonal antibody - v5, gp120-interface, and anti-immune complex epitopes (Complex from Macaca mulatta)
- Nhp anti-immune complex pab - predicted heavy chain (8 kDa, Protein from Macaca mulatta)
- Nhp gp120-interface epitope pab - predicted light chain (8 kDa, Protein from Macaca mulatta)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Surface protein gp120 (57 kDa, Protein from Human immunodeficiency virus 1)
- Nhp gp120-interface epitope pab - predicted heavy chain (10 kDa, Protein from Macaca mulatta)
- Nhp anti-immune complex pab - predicted light chain (8 kDa, Protein from Macaca mulatta)
Brown S, Antanasijevic A, Sewall LM, Garcia DM, Brouwer PJM, Sanders RW, Ward AB
Sci Immunol (2025) 10 pp. eadp5218-eadp5218 [ Pubmed: 39823319 DOI: doi:10.1126/sciimmunol.adp5218 ]
- Rabbit v1/v3 epitope pab - predicted heavy chain (9 kDa, Protein from Oryctolagus cuniculus)
- Surface protein gp120 (56 kDa, Protein from Human immunodeficiency virus 1)
- Rabbit anti-immune complex pab - predicted light chain (8 kDa, Protein from Oryctolagus cuniculus)
- Rabbit v1/v3 epitope pab - predicted light chain (8 kDa, Protein from Oryctolagus cuniculus)
- Transmembrane protein gp41 (17 kDa, Protein from Human immunodeficiency virus 1)
- Hiv ch505/bg505 sosip env in complex with v1/v3 and anti-immune complex pabs (Complex from Oryctolagus cuniculus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Hemagglutinin H1 New Caledonia 1999 in complex with monoclonal antibody Fab 43_S0008
Resolution: 3.09 Å
EM Method: Single-particle
Fitted PDBs: 9b2m
Q-score: 0.377
Ataca S, Sangesland M, de Paiva Froes Rocha R, Torrents de la Pena A, Ronsard L, Boyoglu-Barnum S, Gillespie RA, Tsybovsky Y, Stephens T, Moin SM, Lederhofer J, Creanga A, Andrews SF, Barnes RM, Rohrer D, Lonberg N, Graham BS, Ward AB, Lingwood D, Kanekiyo M
Cell Rep (2024) 43 pp. 114990-114990 [ DOI: doi:10.1016/j.celrep.2024.114990 Pubmed: 39580804 ]
- Heavy chain monoclonal antibody fab 3_s0008 (24 kDa, Protein from Mus sp.)
- Light chain monoclonal antibody fab 3_s0008 (24 kDa, Protein from Mus sp.)
- Hemagglutinin h1 new caledonia 1999 in complex with monoclonal antibody fab 43_s0008 (330 kDa, Complex from Homo sapiens)
- Hemagglutinin ha1 chain (37 kDa, Protein from Influenza A virus)
- Hemagglutinin ha2 chain (25 kDa, Protein from Influenza A virus)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of hemagglutinin H5 A/Texas/37/2024 in complex with LSTa and antibody CR9114
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 9dwe
Q-score: 0.559
Good MR, Fernandez-Quintero ML, Ji W, Rodriguez AJ, Han J, Ward AB, Guthmiller JJ
Nat Commun (2024) 15 pp. 10768-10768 [ DOI: doi:10.1038/s41467-024-54934-3 Pubmed: 39737954 ]
- Hemagglutinin (Complex)
- Cr9114 fab fab heavy chain (12 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Hemagglutinin (65 kDa, Protein from Influenza A virus)
- Cr9114 fab (Complex from Homo sapiens)
- Hemagglutinin h5 a/texas/37/2024 homotrimer bound to lsta and cr9114 fab (Complex from Homo sapiens)
- Cr9114 fab light chain (11 kDa, Protein from Homo sapiens)