Glycan-trimmed BG505 UFO trimer complex with VRC01 Fab
To Be Published
- Light chain of vrc01 fab (Protein from Homo sapiens)
- Glycan-trimmed bg505 ufo trimer (Protein from Human immunodeficiency virus 1)
- Glycan-trimmed bg505 ufo trimer complex with vrc01 (Complex from Human immunodeficiency virus 1)
- Heavy chain of vrc01 fab (Protein from Homo sapiens)
Deterget-solubilized E. coli RseP(L358C) mutant in complex with Fab
Imaizumi Y, Takanuki K, Miyake T, Takemoto M, Hirata K, Hirose M, Oi R, Kobayashi T, Miyoshi K, Aruga R, Yokoyama T, Katagiri S, Matsuura H, Iwasaki K, Kato T, Kaneko MK, Kato Y, Tajiri M, Akashi S, Nureki O, Hizukuri Y, Akiyama Y, Nogi T
Sci Adv (2022) 8 pp. eabp9011-eabp9011 [ DOI: doi:10.1126/sciadv.abp9011 Pubmed: 36001659 ]
- Binary complex of e. coli rsep(l358c) mutant with fab (Complex)
- Fab (Complex from Mus musculus)
- E. coli rsep(l358c) mutant (Protein from Escherichia coli)
- Heavy chain of fab (Protein from Mus musculus)
- Rsep (Complex from Escherichia coli)
- Light chain of fab (Protein from Mus musculus)
Saunders KO, Edwards RJ, Tilahun K, Manne K, Lu X, Cain DW, Wiehe K, Williams WB, Mansouri K, Hernandez GE, Sutherland L, Scearce R, Parks R, Barr M, DeMarco T, Eater CM, Eaton A, Morton G, Mildenberg B, Wang Y, Rountree RW, Tomai MA, Fox CB, Moody MA, Alam SM, Santra S, Lewis MG, Denny TN, Shaw GM, Montefiori DC, Acharya P, Haynes BF
Sci Transl Med (2022) 14 pp. eabo5598-eabo5598 [ Pubmed: 36070369 DOI: doi:10.1126/scitranslmed.abo5598 ]
- Dh950 antibody fab heavy chain (Complex from Homo sapiens)
- Hiv env ch505tfchim.6r.sosip.664.v4.1 trimer (Complex from Human immunodeficiency virus 2)
- Complex of hiv env ch505tfchim.6r.sosip.664.v4.1 with dh950 antibody fab (23 kDa, Complex from Human immunodeficiency virus 2)
- Dh950 antibody fab heavy chain (Protein from Homo sapiens)
- Dh950 antibody fab (Complex from Homo sapiens)
- Hiv env ch505tfchim.6r.sosip.664.v4.1 (Protein from Human immunodeficiency virus 1)
- Dh950 antibody fab light chain (Complex from Homo sapiens)
- Dh950 antibody fab light chain (Protein from Homo sapiens)
Puumala virus-like particle glycoprotein spike in complex with fab fragment P-4G2.
Resolution: 13.4 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7b09
Q-score: 0.077
Rissanen I, Stass R, Krumm SA, Seow J, Hulswit RJ, Paesen GC, Hepojoki J, Vapalahti O, Lundkvist A, Reynard O, Volchkov V, Doores KJ, Huiskonen JT, Bowden TA
eLife (2020) 9 [ DOI: doi:10.7554/eLife.58242 Pubmed: 33349334 ]
- Heavy chain of fab fragment p-4g2 (25 kDa, Protein from Myodes glareolus)
- Envelope polyprotein (40 kDa, Protein from Puumala orthohantavirus)
- Envelope polyprotein (49 kDa, Protein from Puumala orthohantavirus)
- Puumala virus - sotkamo (Virus from Puumala virus - Sotkamo)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Light chain of fab fragment p-4g2 (23 kDa, Protein from Myodes glareolus)
S-2H2-F1 structure, one RBD is up and two RBDs are down, only up RBD binds with a 2H2 Fab
Resolution: 13.5 Å
EM Method: Single-particle
Fitted PDBs: 7dk5
Q-score: 0.071
Zhang C, Wang Y, Zhu Y, Liu C, Gu C, Xu S, Wang Y, Zhou Y, Wang Y, Han W, Hong X, Yang Y, Zhang X, Wang T, Xu C, Hong Q, Wang S, Zhao Q, Qiao W, Zang J, Kong L, Wang F, Wang H, Qu D, Lavillette D, Tang H, Deng Q, Xie Y, Cong Y, Huang Z
Nat Commun (2021) 12 pp. 264-264 [ Pubmed: 33431876 DOI: doi:10.1038/s41467-020-20465-w ]
- The light chain of 2h2 fab (23 kDa, Protein from Mus musculus)
- Complex of sars-cov-2 s protein with 2h2 fab, one rbd is up and two rbds are down (Complex from Severe acute respiratory syndrome coronavirus 2)
- Spike glycoprotein (140 kDa, Protein from Severe acute respiratory syndrome coronavirus 2)
- 2h2 fab (Complex)
- The heavy chain of 2h2 fab (22 kDa, Protein from Mus musculus)
- Sars-cov-2 s protein (Complex from Mus musculus)
Resolution: 12.0 Å
EM Method: Single-particle
Fitted PDBs: 6idi
Q-score: 0.079
Wirawan M, Fibriansah G, Marzinek JK, Lim XX, Ng TS, Sim AYL, Zhang Q, Kostyuchenko VA, Shi J, Smith SA, Verma CS, Anand G, Crowe Jr JE, Bond PJ, Lok SM
Structure (2019) 27 pp. 253-267.e8 [ Pubmed: 30471923 DOI: doi:10.1016/j.str.2018.10.009 ]
- Dengue virus 3 (Virus from Dengue virus 3)
- Fab 1h10 heavy chain (v-region) (15 kDa, Protein from Homo sapiens)
- Premembrane protein (18 kDa, Protein from Dengue virus 3)
- Envelope protein (53 kDa, Protein from Dengue virus 3)
- Dengue virus 3 in complex with human antibody (Complex)
- Fab 1h10 light chain (v-region) (12 kDa, Protein from Homo sapiens)
- Fab 1h10 (Complex from Homo sapiens)
Landais E, Murrell B, Briney B, Murrell S, Rantalainen K, Berndsen ZT, Ramos A, Wickramasinghe L, Smith ML, Eren K, de Val N, Wu M, Cappelletti A, Umotoy J, Lie Y, Wrin T, Algate P, Chan-Hui PY, Karita E, Ward AB, Wilson IA, Burton DR, Smith D, Pond SLK, Poignard P
Immunity (2017) 47 pp. 990-1003.e9 [ Pubmed: 29166592 DOI: doi:10.1016/j.immuni.2017.11.002 ]
- Hiv-1 envelope glycoprotein sosip.664 clone pc64m4c054 in complex with autologous fab pct64-13c (275 kDa, Complex from Human immunodeficiency virus 1)
- Hiv-1 envelope glycoprotein sosip.664 clone pc64m4c054 (Protein from Human immunodeficiency virus 1)
- Immunoglobulin g pct64-13c heavy chain (Protein from Homo sapiens)
- Immunoglobulin g pct64-13c light chain (Protein from Homo sapiens)
Cryo-EM structure of zika virus complexed with Fab C10 at pH 5.0
Resolution: 12.0 Å
EM Method: Single-particle
Fitted PDBs: 5h32
Q-score: 0.073
Zhang S, Kostyuchenko VA, Ng T-S, Lim X-N, Ooi JSG, Lambert S, Tan TY, Widman DG, Shi J, Baric RS, Lok S-M
Nat Commun (2016) 7 pp. 13679-13679 [ Pubmed: 27882950 DOI: doi:10.1038/ncomms13679 ]
- Zika virus complexed with fab c10 at ph 5.0 (Complex)
- C10 igg light chain variable region (11 kDa, Protein from Homo sapiens)
- C10 igg heavy chain variable region (14 kDa, Protein from Homo sapiens)
- Zika virus (Complex from Zika virus)
- Fab c10 (Complex)
- Structural protein e (44 kDa, Protein from Zika virus)
Resolution: 13.0 Å
EM Method: Single-particle
Fitted PDBs: 4ckd
Q-score: 0.075
Vinothkumar KR, McMullan G, Henderson R
Structure (2014) 22 pp. 621-627 [ Pubmed: 24613486 DOI: doi:10.1016/j.str.2014.01.011 ]
- Beta-galactosidase (465 kDa, Protein from Escherichia coli)
- Scfv13r4 antibody fv light chain (Protein from Mus musculus)
- Single chain fv antibody domain bound to the enzyme beta-galactosidase (560 kDa, Sample)
- Scfv13r4 antibody fv heavy chain (Protein from Mus musculus)
3D membrane-bound structure of FVIII bound to single lipid bilayer nanotubes
Stoilova-McPhie S, Lynch GC, Ludtke S, Pettitt BM
Biopolymers (2013) 99 pp. 448-459 [ Pubmed: 23616213 DOI: doi:10.1002/bip.22199 ]