Resolution: 2.785 Å
EM Method: Single-particle
Fitted PDBs: 8c29
Q-score: 0.594
Opatikova M, Semchonok DA, Kopecny D, Ilik P, Pospisil P, Ilikova I, Roudnicky P, Zeljkovic SC, Tarkowski P, Kyrilis FL, Hamdi F, Kastritis PL, Kouril R
Nat Plants (2023) 9 pp. 1359-1369 [ DOI: doi:10.1038/s41477-023-01483-0 Pubmed: 37550369 ]
- 1,2-diacyl-glycerol-3-sn-phosphate (704 Da, Ligand)
- Photosystem ii d2 protein (39 kDa, Protein from Picea abies)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b559 subunit beta (4 kDa, Protein from Picea abies)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (1r,3r)-6-{(3e,5e,7e,9e,11e,13e,15e,17e)-18-[(1s,4r,6r)-4-hydroxy-2,2,6-trimethyl-7-oxabicyclo[4.1.0]hept-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaenylidene}-1,5,5-trimethylcyclohexane-1,3-diol (600 Da, Ligand)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Picea abies)
- The c2s2-type psii-lhcii supercomplex (Complex from Picea abies)
- Photosystem ii core complex (c2) (Complex from Picea abies)
- Photosystem ii psbx (12 kDa, Protein from Picea abies)
- Magnesium ion (24 Da, Ligand)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Picea abies)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Picea abies)
- Palmitoleic acid (254 Da, Ligand)
- Chlorophyll b (907 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Picea abies)
- Oxygen-evolving enhancer protein 1, chloroplastic (36 kDa, Protein from Picea abies)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Picea abies)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Picea abies)
- Photosystem ii 5 kda protein, chloroplastic (14 kDa, Protein from Picea abies)
- Alpha-linolenic acid (278 Da, Ligand)
- Photosystem ii cp43 reaction center protein (51 kDa, Protein from Picea abies)
- Fe (ii) ion (55 Da, Ligand)
- Photosystem ii reaction center protein k (6 kDa, Protein from Picea abies)
- Photosystem ii reaction center protein i (4 kDa, Protein from Picea abies)
- Photosystem ii light-harvesting complex (Complex from Picea abies)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Picea abies)
- Photosystem ii reaction center protein m (3 kDa, Protein from Picea abies)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Picea abies)
- Chlorophyll a (893 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Water (18 Da, Ligand)
- Diacyl glycerol (625 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (32 kDa, Protein from Picea abies)
- Photosystem ii reaction center protein t (3 kDa, Protein from Picea abies)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- (2r)-2,5,7,8-tetramethyl-2-[(4r,8r)-4,8,12-trimethyltridecyl]chroman-6-ol (430 Da, Ligand)
- Photosystem ii protein d1 (38 kDa, Protein from Picea abies)
- Psii 6.1 kda protein (15 kDa, Protein from Picea abies)
Far-red light-harvesting complex of Antarctic alga Prasiola crispa
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8hw1
Q-score: 0.58
Kosugi M, Kawasaki M, Shibata Y, Hara K, Takaichi S, Moriya T, Adachi N, Kamei Y, Kashino Y, Kudoh S, Koike H, Senda T
Nat Commun (2023) 14 pp. 730-730 [ Pubmed: 36792917 DOI: doi:10.1038/s41467-023-36245-1 ]
- Far-red light-harvesting complex (700 kDa, Complex from Prasiola crispa)
Structure of the green algal photosystem I supercomplex with light-harvesting complex I
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6jo5
Q-score: 0.567
Suga M, Ozawa SI, Yoshida-Motomura K, Akita F, Miyazaki N, Takahashi Y
Nat Plants (2019) 5 pp. 626-636 [ DOI: doi:10.1038/s41477-019-0438-4 Pubmed: 31182847 ]
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i - light harvesting complex i supercomplex (Complex from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit v, chloroplastic (9 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (84 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (17 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit f, photosystem i reaction center subunit iii, chloroplastic (17 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (8 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit psak, chloroplastic (8 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
Structure of the green algal photosystem I supercomplex with light-harvesting complex I
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 6jo6
Q-score: 0.591
Suga M, Ozawa SI, Yoshida-Motomura K, Akita F, Miyazaki N, Takahashi Y
Nat Plants (2019) 5 pp. 626-636 [ DOI: doi:10.1038/s41477-019-0438-4 Pubmed: 31182847 ]
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit viii (10 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit xi (16 kDa, Protein from Chlamydomonas reinhardtii)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i - light harvesting complex i supercomplex (Complex from Chlamydomonas reinhardtii)
- Chlorophyll b (907 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (25 kDa, Protein from Chlamydomonas reinhardtii)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit v, chloroplastic (9 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i p700 chlorophyll a apoprotein a2 (84 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit ii, chloroplastic (17 kDa, Protein from Chlamydomonas reinhardtii)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit f, photosystem i reaction center subunit iii, chloroplastic (17 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a (893 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Chlamydomonas reinhardtii)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (8 kDa, Protein from Chlamydomonas reinhardtii)
- Photosystem i reaction center subunit psak, chloroplastic (8 kDa, Protein from Chlamydomonas reinhardtii)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Chlamydomonas reinhardtii)
Structure of the green algal photosystem I supercomplex with light-harvesting complex I
Suga M, Ozawa SI, Yoshida-Motomura K, Akita F, Miyazaki N, Takahashi Y
Nat Plants (2019) 5 pp. 626-636 [ DOI: doi:10.1038/s41477-019-0438-4 Pubmed: 31182847 ]
Structure of the green algal photosystem I supercomplex with light-harvesting complex I
Suga M, Ozawa SI, Yoshida-Motomura K, Akita F, Miyazaki N, Takahashi Y
Nat Plants (2019) 5 pp. 626-636 [ DOI: doi:10.1038/s41477-019-0438-4 Pubmed: 31182847 ]