Conformational Dynamics of the D53-D3-D14 Complex in Strigolactone Signaling
Resolution: 7.09 Å
EM Method: Single-particle
Fitted PDBs: 8if6
Q-score: 0.121
Liu S, Wang J, Song B, Gong X, Liu H, Hu Q, Zhang J, Li Q, Zheng J, Wang H, Xu HE, Li J, Wang B
Plant Cell Physiol (2023) 64 pp. 1046-1056 [ DOI: doi:10.1093/pcp/pcad067 Pubmed: 37384578 ]
- Plant protein complex (Complex from Oryza sativa)
- Strigolactone esterase d14 (33 kDa, Protein from Oryza sativa subsp. japonica)
- Skp1-like protein 20 (19 kDa, Protein from Oryza sativa subsp. japonica)
- F-box/lrr-repeat max2 homolog (79 kDa, Protein from Oryza sativa subsp. japonica)
Cryo-EM map of MYC-MAX-OCT4-LIN28 complex
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schubeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thoma NH
Nature (2023) 619 pp. 385-393 [ Pubmed: 37407816 DOI: doi:10.1038/s41586-023-06282-3 ]
- Histone h3.1 (Protein from Homo sapiens)
- Histones, human_cmyc and human_max (Complex from Homo sapiens)
- Histone h4 (Protein from Homo sapiens)
- Human_max (Protein from Homo sapiens)
- Oct4-gfp (Protein from Homo sapiens)
- Myc-max and oct4-bound nucleosome (Complex)
- Human_cmyc (Protein from Homo sapiens)
- Oct4-gfp (Complex from Homo sapiens)
- Histone h2b type 1-j (Protein from Homo sapiens)
- Histone h2a type 1-b/e (Protein from Homo sapiens)
MAX-MAX bound to a nucleosome at SHL+5.1 and SHL-6.9.
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schubeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thoma NH
Nature (2023) 619 pp. 385-393 [ DOI: doi:10.1038/s41586-023-06282-3 Pubmed: 37407816 ]
- Max-max bound to a nucleosome at shl+5.1 and shl-6.9 (Complex)
- Histones (Complex from Homo sapiens)
- Max (Complex from Homo sapiens)
- Histone h2a type 1-b/e (Protein from Homo sapiens)
- Histone h3.1 (Protein from Homo sapiens)
- Dna (127-mer) (DNA from synthetic construct)
- Histone h2b type 1-j (Protein from Homo sapiens)
- Histone h4 (Protein from Homo sapiens)
- Max (Protein from Homo sapiens)
- Dna (Complex from Synthetic construct)
OCT4 and MYC-MAX co-bound to a nucleosome
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ots
Q-score: 0.404
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schubeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thoma NH
Nature (2023) 619 pp. 385-393 [ DOI: doi:10.1038/s41586-023-06282-3 Pubmed: 37407816 ]
- Histone h4 (11 kDa, Protein from Homo sapiens)
- Nucleosomal core particle (Complex)
- Histone h2b type 1-j (14 kDa, Protein from Homo sapiens)
- Myc proto-oncogene protein (11 kDa, Protein from Homo sapiens)
- Histone h2a type 1-b/e (14 kDa, Protein from Homo sapiens)
- Cmyc-max heterodimer (Complex from Homo sapiens)
- Nucleosomal dna (Complex from synthetic construct)
- Green fluorescent protein,pou domain, class 5, transcription factor 1 (59 kDa, Protein from Homo sapiens)
- Pentanedial (100 Da, Ligand)
- Histone octamer (Complex from Homo sapiens)
- Protein max (9 kDa, Protein from Homo sapiens)
- Myc-max and oct4-bound nucleosome (Complex)
- Histone h3.1 (15 kDa, Protein from Homo sapiens)
- Dna (127-mer) (39 kDa, DNA from synthetic construct)
- Oct4 (Complex from Homo sapiens)
- Nucleosome-bound factors (Complex)
- Dna (127-mer) (39 kDa, DNA from synthetic construct)
MYC-MAX bound to a nucleosome at SHL+5.8
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8ott
Q-score: 0.411
Michael AK, Stoos L, Crosby P, Eggers N, Nie XY, Makasheva K, Minnich M, Healy KL, Weiss J, Kempf G, Cavadini S, Kater L, Seebacher J, Vecchia L, Chakraborty D, Isbel L, Grand RS, Andersch F, Fribourgh JL, Schubeler D, Zuber J, Liu AC, Becker PB, Fierz B, Partch CL, Menet JS, Thoma NH
Nature (2023) 619 pp. 385-393 [ DOI: doi:10.1038/s41586-023-06282-3 Pubmed: 37407816 ]
- Dna (144-mer) (44 kDa, DNA from synthetic construct)
- Nucleosomal core particle (Complex)
- Cmyc/max heterodimer (Complex from Homo sapiens)
- Histone h2b type 1-j (10 kDa, Protein from Homo sapiens)
- Pentanedial (100 Da, Ligand)
- Nucleosomal dna (Complex from synthetic construct)
- Histone h2a type 1-b/e (11 kDa, Protein from Homo sapiens)
- Myc-max bound to a nucleosome at shl+5.8 (Complex)
- Histone octamer (Complex from Homo sapiens)
- Histone h3.1 (11 kDa, Protein from Homo sapiens)
- Histone h4 (9 kDa, Protein from Homo sapiens)
- Protein max (6 kDa, Protein from Homo sapiens)
- Myc proto-oncogene protein (6 kDa, Protein from Homo sapiens)
- Dna (144-mer) (44 kDa, DNA from synthetic construct)
- Histone h2a type 1-k (11 kDa, Protein from Homo sapiens)