Resolution: 6.1 Å
EM Method: Single-particle
Fitted PDBs: 9bcx
Q-score: 0.133
Faull SV, Barbon M, Mossler A, Yuan Z, Bai L, Reuter LM, Riera A, Winkler C, Magdalou I, Peach M, Li H, Speck C
Nat Commun (2025) 16 pp. 14-14 [ Pubmed: 39747125 DOI: doi:10.1038/s41467-024-55479-1 ]
- Origin recognition complex subunit 1 (104 kDa, Protein from Saccharomyces cerevisiae)
- Dna (39-mer) (12 kDa, DNA from synthetic construct)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Cell division control protein 6 (58 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Origin recognition complex subunit 5 (55 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
- Dna (39-mer) (11 kDa, DNA from synthetic construct)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Origin recognition complex subunit 3 (72 kDa, Protein from Saccharomyces cerevisiae)
- Origin recognition complex subunit 2 (71 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm3 (107 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm5 (86 kDa, Protein from Saccharomyces cerevisiae)
- Origin recognition complex subunit 6 (50 kDa, Protein from Saccharomyces cerevisiae)
- Tah11 isoform 1 (68 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Orc-cdc6-mcm2-7-dsdna (Complex from Saccharomyces cerevisiae)
- Origin recognition complex subunit 4 (60 kDa, Protein from Saccharomyces cerevisiae)
H. sapiens MCM2-7 double hexamer bound to double stranded DNA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8s09
Q-score: 0.448
Weissmann F, Greiwe JF, Puhringer T, Eastwood EL, Couves EC, Miller TCR, Diffley JFX, Costa A
Nature (2024) 636 pp. 499-508 [ Pubmed: 39604733 DOI: doi:10.1038/s41586-024-08263-6 ]
- Dna (45-mer) (13 kDa, DNA from synthetic construct)
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Dna (45-mer) (13 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Double stranded dna (Complex from synthetic construct)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- H. sapiens mcm2-7 (Complex from Homo sapiens)
- H. sapiens mcm2-7 double hexamer bound to double stranded dna (1 MDa, Complex)
H. sapiens MCM2-7 hexamer bound to double stranded DNA
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8s0a
Q-score: 0.442
Weissmann F, Greiwe JF, Puhringer T, Eastwood EL, Couves EC, Miller TCR, Diffley JFX, Costa A
Nature (2024) 636 pp. 499-508 [ Pubmed: 39604733 DOI: doi:10.1038/s41586-024-08263-6 ]
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- H. sapiens mcm2-7 hexamer bound to double stranded dna (600 kDa, Complex)
- Zinc ion (65 Da, Ligand)
- Double stranded dna (Complex from synthetic construct)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Dna (22-mer) (6 kDa, DNA from synthetic construct)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- H. sapiens mcm2-7 (Complex from Homo sapiens)
H. sapiens MCM bound to double stranded DNA and ORC6 as part of the MCM-ORC complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8s0b
Q-score: 0.377
Weissmann F, Greiwe JF, Puhringer T, Eastwood EL, Couves EC, Miller TCR, Diffley JFX, Costa A
Nature (2024) 636 pp. 499-508 [ Pubmed: 39604733 DOI: doi:10.1038/s41586-024-08263-6 ]
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Phosphothiophosphoric acid-adenylate ester (523 Da, Ligand)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Dna (45-mer) (13 kDa, DNA from synthetic construct)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Origin recognition complex subunit 6 (28 kDa, Protein from Homo sapiens)
- Dna (45-mer) (13 kDa, DNA from synthetic construct)
- Zinc ion (65 Da, Ligand)
- Double stranded dna (Complex from synthetic construct)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- H. sapiens mcm bound to double stranded dna and orc6 as part of the mcm-orc complex (600 kDa, Complex)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- H. sapiens mcm2-7 (Complex from Homo sapiens)
- H. sapiens orc6 (Complex from Homo sapiens)
Cryo-EM structure of a human MCM2-7 single hexamer on dsDNA
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8w0e
Q-score: 0.445
Yang R, Hunker O, Wise M, Bleichert F
Nature (2024) 636 pp. 488-498 [ Pubmed: 39604729 DOI: doi:10.1038/s41586-024-08237-8 ]
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- In vitro loaded, human mcm2-7 single hexamer on dsdna (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Dna (25-mer) (7 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
Cryo-EM structure of a human MCM2-7 double hexamer on dsDNA
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8w0f
Q-score: 0.501
Yang R, Hunker O, Wise M, Bleichert F
Nature (2024) 636 pp. 488-498 [ Pubmed: 39604729 DOI: doi:10.1038/s41586-024-08237-8 ]
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- In vitro loaded, human mcm2-7 double hexamer on dsdna (Complex from Homo sapiens)
- Dna (47-mer) (14 kDa, DNA from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- Dna (47-mer) (14 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
Cryo-EM structure of a human MCM2-7 dimer
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8w0g
Q-score: 0.268
Yang R, Hunker O, Wise M, Bleichert F
Nature (2024) 636 pp. 488-498 [ Pubmed: 39604729 DOI: doi:10.1038/s41586-024-08237-8 ]
- Human mcm2-7 dimer (Complex from Homo sapiens)
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
Cryo-EM structure of the human MCM2-7 heterohexamer
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8w0i
Q-score: 0.367
Yang R, Hunker O, Wise M, Bleichert F
Nature (2024) 636 pp. 488-498 [ Pubmed: 39604729 DOI: doi:10.1038/s41586-024-08237-8 ]
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- Human mcm2-7 heterohexamer (Complex from Homo sapiens)
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 9caq
Q-score: 0.396
Yang R, Hunker O, Wise M, Bleichert F
Nature (2024) 636 pp. 488-498 [ Pubmed: 39604729 DOI: doi:10.1038/s41586-024-08237-8 ]
- Dna replication licensing factor mcm3 (91 kDa, Protein from Homo sapiens)
- Dna (44-mer) (13 kDa, DNA from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna replication licensing factor mcm5 (82 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm6 (93 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Dna replication licensing factor mcm4 (96 kDa, Protein from Homo sapiens)
- Dna (44-mer) (13 kDa, DNA from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (102 kDa, Protein from Homo sapiens)
- Dna replication licensing factor mcm7 (81 kDa, Protein from Homo sapiens)
- In vitro loaded, human mcm2-7 double hexamer on dsdna (formed by dimerization of independently loaded mcm2-7 single hexamers) (Complex from Homo sapiens)
S. cerevisiae nexus-sCMGE after DNA replication initiation
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8p5e
Q-score: 0.39
Henrikus SS, Gross MH, Willhoft O, Puhringer T, Lewis JS, McClure AW, Greiwe JF, Palm G, Nans A, Diffley JFX, Costa A
Nat Struct Mol Biol (2024) 31 pp. 1265-1276 [ Pubmed: 38760633 DOI: doi:10.1038/s41594-024-01280-z ]
- Dna polymerase epsilon catalytic subunit a (255 kDa, Protein from Saccharomyces cerevisiae)
- Dna (19-mer) (5 kDa, DNA from synthetic construct)
- Dna replication complex gins containing psf1, psf2, psf3 and sld5 (Complex from Saccharomyces cerevisiae)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- Cell division control protein 45 (75 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf2 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna (Complex from synthetic construct)
- Dna replication complex gins protein psf3 (25 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm6 (113 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm7 (95 kDa, Protein from Saccharomyces cerevisiae)
- Dna polymerase epsilon subunit b (78 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Dna replication licensing factor mcm4 (105 kDa, Protein from Saccharomyces cerevisiae)
- Minichromosome maintenance protein 5 (86 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm3 (111 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factor mcm2 (98 kDa, Protein from Saccharomyces cerevisiae)
- Dna replication licensing factors mcm2-7 (Complex from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Complex of mcm2-7, cdc45, gins (psf1-3, sld5) dna polymerase epsilon (subunit a and b), 19-mer dna molecule with complementary 7-mer dna molecule (Complex from Saccharomyces cerevisiae)
- Cdc45 (Complex from Saccharomyces cerevisiae)
- Dna replication complex gins protein sld5 (33 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Dna polymerase epsilon contains catalytic subunit a and non-catalytic subunit b (Complex from Saccharomyces cerevisiae)
- Dna replication complex gins protein psf1 (24 kDa, Protein from Saccharomyces cerevisiae)
- Dna (7-mer) (2 kDa, DNA from synthetic construct)