Large subunit of the Chlamydomonas reinhardtii mitoribosome
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7pkt
Q-score: 0.486
Waltz F, Salinas-Giege T, Englmeier R, Meichel H, Soufari H, Kuhn L, Pfeffer S, Forster F, Engel BD, Giege P, Drouard L, Hashem Y
Nat Commun (2021) 12 pp. 7176-7176 [ Pubmed: 34887394 DOI: doi:10.1038/s41467-021-27200-z ]
- L4 rrna (38 kDa, RNA from Chlamydomonas reinhardtii)
- Ml41 (12 kDa, Protein from Chlamydomonas reinhardtii)
- Ml59/64 (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l30 domain-containing protein (24 kDa, Protein from Chlamydomonas reinhardtii)
- Ml63/57/60 (14 kDa, Protein from Chlamydomonas reinhardtii)
- L1 rrna (51 kDa, RNA from Chlamydomonas reinhardtii)
- 50s ribosomal protein l9, chloroplastic (30 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l2_c domain-containing protein (41 kDa, Protein from Chlamydomonas reinhardtii)
- Large subunit of the mitochondrial ribosome of chlamydomonas reinhardtii (Complex from Chlamydomonas reinhardtii)
- Ml114 (48 kDa, Protein from Chlamydomonas reinhardtii)
- Ml119 (36 kDa, Protein from Chlamydomonas reinhardtii)
- Unk2 (4 kDa, Protein from Chlamydomonas reinhardtii)
- Bl35m (17 kDa, Protein from Chlamydomonas reinhardtii)
- Plastid ribosomal protein l6 (22 kDa, Protein from Chlamydomonas reinhardtii)
- Ul14m (13 kDa, Protein from Chlamydomonas reinhardtii)
- Ml118 (64 kDa, Protein from Chlamydomonas reinhardtii)
- Bl21m (40 kDa, Protein from Chlamydomonas reinhardtii)
- Ml80 (27 kDa, Protein from Chlamydomonas reinhardtii)
- Ml115 (72 kDa, Protein from Chlamydomonas reinhardtii)
- Ml116 (53 kDa, Protein from Chlamydomonas reinhardtii)
- Zinc ion (65 Da, Ligand)
- Ul29m (14 kDa, Protein from Chlamydomonas reinhardtii)
- Ml43 (16 kDa, Protein from Chlamydomonas reinhardtii)
- L3b rrna (59 kDa, RNA from Chlamydomonas reinhardtii)
- Ul22m (39 kDa, Protein from Chlamydomonas reinhardtii)
- 50s ribosomal protein l20 (13 kDa, Protein from Chlamydomonas reinhardtii)
- L2a rrna (27 kDa, RNA from Chlamydomonas reinhardtii)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Ul3m (44 kDa, Protein from Chlamydomonas reinhardtii)
- Bl28m (17 kDa, Protein from Chlamydomonas reinhardtii)
- L5 rrna (47 kDa, RNA from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l33 (6 kDa, Protein from Chlamydomonas reinhardtii)
- L8 rrna (132 kDa, RNA from Chlamydomonas reinhardtii)
- Bl34m (29 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l23 (25 kDa, Protein from Chlamydomonas reinhardtii)
- Ml117 (75 kDa, Protein from Chlamydomonas reinhardtii)
- Bl36m (3 kDa, Protein from Chlamydomonas reinhardtii)
- L3a rrna (5s) (24 kDa, RNA from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l17,bl17m (21 kDa, Protein from Chlamydomonas reinhardtii)
- L6 rrna (43 kDa, RNA from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l13 (29 kDa, Protein from Chlamydomonas reinhardtii)
- Ul4m (45 kDa, Protein from Chlamydomonas reinhardtii)
- Ml113 (84 kDa, Protein from Chlamydomonas reinhardtii)
- Bl32m (13 kDa, Protein from Chlamydomonas reinhardtii)
- L7 rrna (186 kDa, RNA from Chlamydomonas reinhardtii)
- Unk1 (2 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l18e/l15p domain-containing protein (35 kDa, Protein from Chlamydomonas reinhardtii)
- Ul5m (23 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l17 (27 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_l16 domain-containing protein (27 kDa, Protein from Chlamydomonas reinhardtii)
- Bl27m (18 kDa, Protein from Chlamydomonas reinhardtii)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Chlamydomonas reinhardtii)
- Ribosomal_tl5_c domain-containing protein (38 kDa, Protein from Chlamydomonas reinhardtii)
- Ppr* (14 kDa, Protein from Chlamydomonas reinhardtii)
- Kow domain-containing protein,ul24m (31 kDa, Protein from Chlamydomonas reinhardtii)
- Ml40 (17 kDa, Protein from Chlamydomonas reinhardtii)
- Ml87 (23 kDa, Protein from Chlamydomonas reinhardtii)
55S mammalian mitochondrial ribosome with tRNA(P/P) and tRNA(E*)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nsj
Q-score: 0.345
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s5, mitochondrial isoform x2 (48 kDa, Protein from Sus scrofa)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Us15m (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Bs6m (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome with trna(p/p) and trna(e*) (Complex from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Trna(p/p) and trna(e*) (21 kDa, RNA from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Mrna (1 kDa, RNA from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,ms39,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3,pentatricopeptide repeat domain 3 (76 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Water (18 Da, Ligand)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- Unknown (1 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s31, mitochondrial (44 kDa, Protein from Sus scrofa)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Ml52 (13 kDa, Protein from Sus scrofa)
55S mammalian mitochondrial ribosome with mtRF1a and P-site tRNAMet
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7nqh
Q-score: 0.421
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Mrna (2 kDa, RNA from Homo sapiens)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Us15m (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Translation termination complex of mitochondrial ribosome with release factor mtrf1a and p-site trnamet (Complex)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Trna(phe) in lsu (23 kDa, RNA from Sus scrofa)
- Ml40 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Peptide chain release factor 1-like, mitochondrial (Complex from Homo sapiens)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Trnamet (22 kDa, RNA from Homo sapiens)
- Bs6m (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Translation termination complex of mitochondrial ribosome (Complex from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Rna (Complex from Homo sapiens)
- Bl32m (21 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Water (18 Da, Ligand)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Peptide chain release factor 1-like, mitochondrial (41 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- Unknown (1 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s7, mitochondrial (27 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Ml52 (13 kDa, Protein from Sus scrofa)
55S mammalian mitochondrial ribosome with ICT1 and P site tRNAMet
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7nql
Q-score: 0.437
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Us15m (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (20 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- 55s mammalian mitochondrial ribosome with ict1 and p site fmet-trnamet (Complex)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Fmet-trnamet (p site) (22 kDa, RNA from Homo sapiens)
- Mrna (1 kDa, RNA from Homo sapiens)
- Bs6m (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Rna (Complex from Homo sapiens)
- Bl32m (21 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- Water (18 Da, Ligand)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Unknown (1 kDa, Protein from unidentified)
- 12s rrna (308 kDa, RNA from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Ict1 (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Ml52 (13 kDa, Protein from Sus scrofa)
- Unknown (Complex from unidentified)
39S mammalian mitochondrial large ribosomal subunit with mtRRF (post) and mtEFG2
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nsh
Q-score: 0.49
Kummer E, Schubert KN, Schoenhut T, Scaiola A, Ban N
Mol Cell (2021) 81 pp. 2566-2582.e6 [ DOI: doi:10.1016/j.molcel.2021.03.042 Pubmed: 33878294 ]
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Mtrrf (post) and mtefg2 (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- 39s mammalian mitochondrial large ribosomal subunit with mtrrf (post) and mtefg2 (Complex)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Bl17m (19 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- 16s rrna (504 kDa, RNA from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ribosome-releasing factor 2, mitochondrial (83 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- 39s mammalian mitochondrial large ribosomal subunit (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Ribosome-recycling factor, mitochondrial (28 kDa, Protein from Homo sapiens)
- Ict1 (43 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Ml52 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6ydp
Q-score: 0.484
EMBO J (2020) 39 pp. e104820-e104820 [ DOI: doi:10.15252/embj.2020104820 Pubmed: 32602580 ]
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Ul13m (20 kDa, Protein from Sus scrofa)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- 12s rrna (5 MDa, RNA from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Elongation factor g, mitochondrial (Complex from Homo sapiens)
- Elongation factor g, mitochondrial (80 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Ul2m (33 kDa, Protein from Sus scrofa)
- Us15m (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- Ml44 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Uncharacterized protein (19 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Fmet-trnamet (p site) (22 kDa, RNA from Homo sapiens)
- N-formylmethionine (177 Da, Ligand)
- Bs6m (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Ul16m (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- 55s s. scrofa mitochondrial ribosome in complex with mtefg1 and fmet-trnamet (1 MDa, Complex)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Unknown peptide (1 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Ul24m (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Mrna (1 kDa, RNA from Homo sapiens)
- Us17m (14 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Cp trnaphe (23 kDa, RNA from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (49 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Ict1 (38 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Us9m (45 kDa, Protein from Sus scrofa)
- Uncharacterized protein (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Bl31m (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain 3 (79 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Ul15m (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Ml62 (ict1) (23 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Fmet-trnamet (p site) and mrna (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Ml52 (13 kDa, Protein from Sus scrofa)
- 55s s. scrofa mitochondrial ribosome (Complex from Sus scrofa)
55S mammalian mitochondrial ribosome with mtEFG1 and two tRNAMet (TI-POST)
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6ydw
Q-score: 0.31
EMBO J (2020) 39 pp. e104820-e104820 [ DOI: doi:10.15252/embj.2020104820 Pubmed: 32602580 ]
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Uncharacterized protein (18 kDa, Protein from Sus scrofa)
- Uncharacterized protein (25 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s31 (44 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- 12s rrna (5 MDa, RNA from Sus scrofa)
- 39s ribosomal protein l48, mitochondrial (29 kDa, Protein from Sus scrofa)
- Uncharacterized protein (24 kDa, Protein from Sus scrofa)
- Uncharacterized protein (33 kDa, Protein from Sus scrofa)
- Elongation factor g, mitochondrial (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l50 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Uncharacterized protein (37 kDa, Protein from Sus scrofa)
- Us15m (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Uncharacterized protein (24 kDa, Protein from Sus scrofa)
- Uncharacterized protein (15 kDa, Protein from Sus scrofa)
- Uncharacterized protein (21 kDa, Protein from Sus scrofa)
- Uncharacterized protein (33 kDa, Protein from Sus scrofa)
- Ms39 (78 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Uncharacterized protein (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Uncharacterized protein (19 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Trnamet (22 kDa, RNA from Homo sapiens)
- N-formylmethionine (177 Da, Ligand)
- 55s s. scrofa mitochondrial ribosome in complex with mtefg1, two trna-met and cugaug mrna (2 MDa, Complex)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Uncharacterized protein (13 kDa, Protein from Sus scrofa)
- Death associated protein 3 (46 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Uncharacterized protein (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Uncharacterized protein (16 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Uncharacterized protein (17 kDa, Protein from Sus scrofa)
- Cp trna-phe (23 kDa, RNA from Sus scrofa)
- Uncharacterized protein (30 kDa, Protein from Sus scrofa)
- Uncharacterized protein (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Uncharacterized protein (28 kDa, Protein from Sus scrofa)
- Unknown peptide (1 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Elongation factor g, mitochondrial (80 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Mrna (1 kDa, RNA from Homo sapiens)
- Us17m (14 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Sus scrofa)
- Uncharacterized protein (15 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Ict1 (38 kDa, Protein from Sus scrofa)
- Us11m (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Uncharacterized protein (7 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Uncharacterized protein (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein s27 (51 kDa, Protein from Sus scrofa)
- Uncharacterized protein (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Ms37 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (49 kDa, Protein from Sus scrofa)
- Ms23 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Ms34 (25 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Trnamet and mrna (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- 55s s. scrofa mitochondrial ribosome (Complex from Sus scrofa)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gaw
Q-score: 0.449
Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N
Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Ul14m (15 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
- P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Bs21m (10 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l49, mitochondrial (18 kDa, Protein from Sus scrofa)
- Ms27 (51 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l48 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Sus scrofa)
- Ul23m (17 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Sus scrofa)
- Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s35, mitochondrial (37 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Sus scrofa)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l17, mitochondrial (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s6 (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Ml43 (17 kDa, Protein from Sus scrofa)
- Bs16m (15 kDa, Protein from Sus scrofa)
- N-formylmethionine (177 Da, Ligand)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)
- 16s ribosomal rna, mitochondrial (504 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Ms31 (44 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Ul30m (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Uncharacterized protein (27 kDa, Protein from Sus scrofa)
- Ul22m (24 kDa, Protein from Sus scrofa)
- Ms33 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Mammalian mitochondrial translation initiation complex (2 MDa, Complex from sus sucorfa)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Bl32m (21 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- Trna-phe, mitochondrial (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Ml42 (16 kDa, Protein from Sus scrofa)
- Ml53 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Ml50 (18 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s28, mitochondrial (21 kDa, Protein from Sus scrofa)
- Us17m (14 kDa, Protein from Sus scrofa)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
- Ict1 (38 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Bl33m (7 kDa, Protein from Sus scrofa)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Death associated protein 3 (45 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Ml54 (15 kDa, Protein from Sus scrofa)
- Ml65 (49 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Sus scrofa)
- Ml64 (25 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- 12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Sus scrofa)
- Ml45 (35 kDa, Protein from Sus scrofa)
- 39s ribosomal protein l40, mitochondrial isoform 1 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6gaz
Q-score: 0.462
Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N
Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]
- Mitochondrial ribosomal protein s39 (76 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s34 (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s33 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s2 (31 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s27 (45 kDa, Protein from Sus scrofa)
- Nucleic acids (Complex from Homo sapiens)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein s5 (48 kDa, Protein from Sus scrofa)
- Mt-co3 mrna, mitochondrial (63 kDa, RNA from Homo sapiens)
- Death associated protein 3 (45 kDa, Protein from Sus scrofa)
- P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
- Aurora kinase a interacting protein 1 (22 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s6 (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s23 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s35 (37 kDa, Protein from Sus scrofa)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s22 (43 kDa, Protein from Sus scrofa)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- N-formylmethionine (177 Da, Ligand)
- Porcine ribosome (Complex from Sus scrofa)
- Mitochondrial ribosomal protein s10 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s14 (15 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Mitochondrial ribosomal protein s26 (23 kDa, Protein from Sus scrofa)
- Ms31, mrps31 (44 kDa, Protein from Sus scrofa)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Translation initiation factor if-2, mitochondrial (Complex from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein s17 (14 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s25 (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18c (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s21 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s11 (20 kDa, Protein from Sus scrofa)
- 12s ribosomal rna, mitochondrial (308 kDa, RNA from Sus scrofa)
- Unassigned secondary structure elements (1 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s15 (27 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s9 (45 kDa, Protein from Sus scrofa)
- Mitoribosomal protein ms28, mrps28 (21 kDa, Protein from Sus scrofa)
- Mammalian mitochondrial translation initiation complex (2 MDa, Complex)
- Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein s37 (13 kDa, Protein from Sus scrofa)
- Bs16m, mrps16 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s12 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s7 (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s24 (18 kDa, Protein from Sus scrofa)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6gb2
Q-score: 0.481
Kummer E, Leibundgut M, Rackham O, Lee RG, Boehringer D, Filipovska A, Ban N
Nature (2018) 560 pp. 263-267 [ Pubmed: 30089917 DOI: doi:10.1038/s41586-018-0373-y ]
- Mitochondrial ribosomal protein l14 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l37 (47 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l57 (12 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l50 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l18 (20 kDa, Protein from Sus scrofa)
- Spermine (202 Da, Ligand)
- Mitochondrial ribosomal protein l12 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l33 (7 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l2 (33 kDa, Protein from Sus scrofa)
- 'mitochondrial ribosomal protein l59 (25 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l4 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l32 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l9 (30 kDa, Protein from Sus scrofa)
- P-site fmet-trnamet, mitochondrial (22 kDa, RNA from Homo sapiens)
- Mitochondrial ribosomal protein l11 (20 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l23 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l19 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l15 (33 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l58 (23 kDa, Protein from Sus scrofa)
- Water (18 Da, Ligand)
- N-formylmethionine (177 Da, Ligand)
- Cp trnaphe, mitochondrial (23 kDa, RNA from Sus scrofa)
- Mitochondrial ribosomal protein l39 (38 kDa, Protein from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Mammalian mitochondrial ribosome (Complex from Sus scrofa)
- Mitochondrial ribosomal protein l28 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l48 (23 kDa, Protein from Sus scrofa)
- Ml53, mrpl53 (12 kDa, Protein from Sus scrofa)
- Unassigned secondary structure elements (5 kDa, Protein from Sus scrofa)
- 16s ribosomal rna, mitochondrial (504 kDa, RNA from Sus scrofa)
- 5'-guanosine-diphosphate-monothiophosphate (539 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Translation initiation factor if-2, mitochondrial (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l16 (28 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l44 (37 kDa, Protein from Sus scrofa)
- Ribosomal protein (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l22 (24 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- 'mitochondrial ribosomal protein l55 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l51 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l35 (21 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l21 (23 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l27 (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l43 (17 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l10 (29 kDa, Protein from Sus scrofa)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- Mitochondrial ribosomal protein l42 (16 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l45 (35 kDa, Protein from Sus scrofa)
- Ml65, mrps30 (49 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l46 (32 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein s18a (22 kDa, Protein from Sus scrofa)
- Ict1 (38 kDa, Protein from Sus scrofa)
- Mrpl34 (18 kDa, Protein from Sus scrofa)
- Mammalian mitochondrial translation initiation complex (2 MDa, Complex)
- 'mitochondrial ribosomal protein l30 (18 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l20 (17 kDa, Protein from Sus scrofa)
- Translation initiation factor if-2, mitochondrial (72 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l52 (13 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l40 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l38 (44 kDa, Protein from Sus scrofa)
- Uncharacterized protein (15 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l24 (24 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l34 (10 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l17 (19 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l41 (15 kDa, Protein from Sus scrofa)
- Trna (Complex from Homo sapiens)
- Mitochondrial ribosomal protein l47 (30 kDa, Protein from Sus scrofa)
- Mitochondrial ribosomal protein l13 (20 kDa, Protein from Sus scrofa)