Resolution: 2.19 Å
EM Method: Single-particle
Fitted PDBs: 7utd
Q-score: 0.496
Grinter R, Kropp A, Venugopal H, Senger M, Badley J, Cabotaje PR, Jia R, Duan Z, Huang P, Stripp ST, Barlow CK, Belousoff M, Shafaat HS, Cook GM, Schittenhelm RB, Vincent KA, Khalid S, Berggren G, Greening C
Nature (2023) 615 pp. 541-547 [ Pubmed: 36890228 DOI: doi:10.1038/s41586-023-05781-7 ]
- Hydrogenase-2, large subunit (57 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Menaquinone-9 (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- Hydrogenase-2, small subunit (39 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Nickel (iii) ion (58 Da, Ligand)
- Carbonmonoxide-(dicyano) iron (135 Da, Ligand)
- Type 2 [nife]-hydrogenase huc membrane adapter subunit (6 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
- Complex of the type 2 [nife]-hydrogenase huc from mycobacterium smegmatis (833 kDa, Complex from Mycolicibacterium smegmatis)
Resolution: 1.67 Å
EM Method: Single-particle
Fitted PDBs: 7uur
Q-score: 0.837
Grinter R, Kropp A, Venugopal H, Senger M, Badley J, Cabotaje PR, Jia R, Duan Z, Huang P, Stripp ST, Barlow CK, Belousoff M, Shafaat HS, Cook GM, Schittenhelm RB, Vincent KA, Khalid S, Berggren G, Greening C
Nature (2023) 615 pp. 541-547 [ Pubmed: 36890228 DOI: doi:10.1038/s41586-023-05781-7 ]
- Hydrogenase-2, large subunit (57 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Fe3-s4 cluster (295 Da, Ligand)
- Hydrogenase-2, small subunit (35 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Carbonmonoxide-(dicyano) iron (135 Da, Ligand)
- Nickel (iii) ion (58 Da, Ligand)
- Hydroxide ion (17 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Complex of the type 2 [nife]-hydrogenase huc from mycobacterium smegmatis (833 kDa, Complex from Mycolicibacterium smegmatis)
- Menadione (172 Da, Ligand)
- Water (18 Da, Ligand)
Resolution: 8.0 Å
EM Method: Single-particle
Fitted PDBs: 7uus
Q-score: 0.104
Grinter R, Kropp A, Venugopal H, Senger M, Badley J, Cabotaje PR, Jia R, Duan Z, Huang P, Stripp ST, Barlow CK, Belousoff M, Shafaat HS, Cook GM, Schittenhelm RB, Vincent KA, Khalid S, Berggren G, Greening C
Nature (2023) 615 pp. 541-547 [ Pubmed: 36890228 DOI: doi:10.1038/s41586-023-05781-7 ]
- Menaquinone-9 (785 Da, Ligand)
- Fe3-s4 cluster (295 Da, Ligand)
- [nife]-hydrogenase huc membrane associated subunit (19 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Hydrogenase-2, small subunit (39 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Nickel (iii) ion (58 Da, Ligand)
- Hydrogenase-2, large subunit (57 kDa, Protein from Mycolicibacterium smegmatis MC2 155)
- Carbonmonoxide-(dicyano) iron (135 Da, Ligand)
- Complex of the type 2 [nife]-hydrogenase huc from mycobacterium smegmatis (833 kDa, Complex from Mycolicibacterium smegmatis MC2 155)
- Magnesium ion (24 Da, Ligand)
Resolution: 1.52 Å
EM Method: Single-particle
Fitted PDBs: 8dqv
Q-score: 0.857
Grinter R, Kropp A, Venugopal H, Senger M, Badley J, Cabotaje PR, Jia R, Duan Z, Huang P, Stripp ST, Barlow CK, Belousoff M, Shafaat HS, Cook GM, Schittenhelm RB, Vincent KA, Khalid S, Berggren G, Greening C
Nature (2023) 615 pp. 541-547 [ Pubmed: 36890228 DOI: doi:10.1038/s41586-023-05781-7 ]
- Fe3-s4 cluster (295 Da, Ligand)
- Carbonmonoxide-(dicyano) iron (135 Da, Ligand)
- Nickel (iii) ion (58 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Complex of the type 2 [nife]-hydrogenase huc from mycobacterium smegmatis (833 kDa, Complex from Mycolicibacterium smegmatis)
- Menadione (172 Da, Ligand)
- Hydrogenase-2, small subunit (35 kDa, Protein from Mycolicibacterium smegmatis)
- Oxygen atom (15 Da, Ligand)
- Hydrogenase-2, large subunit (57 kDa, Protein from Mycolicibacterium smegmatis)
- Water (18 Da, Ligand)