NDH-PSI-LHCI supercomplex from S. oleracea: composite map
Introini B, Hahn A, Kuhlbrandt W
Nat Struct Mol Biol (2025) [ DOI: doi:10.1038/s41594-024-01478-1 Pubmed: 39856350 ]
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (18 kDa, Protein from Spinacia oleracea)
- Phylloquinone (450 Da, Ligand)
- 4-trans-(4-trans-propylcyclohexyl)-cyclohexyl alpha-maltoside (548 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (14 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit u, chloroplastic (27 kDa, Protein from Spinacia oleracea)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Spinacia oleracea)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Spinacia oleracea)
- Ndh-psi-lhci supercomplex from spinacia oleracea (Complex from Spinacia oleracea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 4, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (55 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- Chlorophyll b (907 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (7 kDa, Protein from Spinacia oleracea)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Spinacia oleracea)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (44 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (84 kDa, Protein from Spinacia oleracea)
- Photosystem i reaction center subunit vi, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Chlorophyll a-b binding protein, chloroplastic (24 kDa, Protein from Spinacia oleracea)
- Chlorophyll a-b binding protein, chloroplastic (21 kDa, Protein from Spinacia oleracea)
- Photosystem i reaction center subunit ii, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 2 a, chloroplastic (54 kDa, Protein from Spinacia oleracea)
- Peptidylprolyl isomerase (15 kDa, Protein from Spinacia oleracea)
- Psi-k (13 kDa, Protein from Spinacia oleracea)
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- Chlorophyll a (893 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (15 kDa, Protein from Spinacia oleracea)
- Photosystem i reaction center subunit iii, chloroplastic (17 kDa, Protein from Spinacia oleracea)
- Peptidyl-prolyl cis-trans isomerase (18 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit o, chloroplastic (11 kDa, Protein from Spinacia oleracea)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Spinacia oleracea)
- Photosystem i reaction center subunit v, chloroplastic (10 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (13 kDa, Protein from Spinacia oleracea)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (18 kDa, Protein from Spinacia oleracea)
- Photosystem i reaction center subunit xi, chloroplastic (16 kDa, Protein from Spinacia oleracea)
- Photosystem i iron-sulfur center (9 kDa, Protein from Spinacia oleracea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (22 kDa, Protein from Spinacia oleracea)
- Beta-carotene (536 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (40 kDa, Protein from Spinacia oleracea)
- Chlorophyll a isomer (893 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from Spinacia oleracea)
- 5-[(2e,6e,10e,14e,18e,22e)-3,7,11,15,19,23,27-heptamethyloctacosa-2,6,10,14,18,22,26-heptaenyl]-2,3-dimethylbenzo-1,4-quinone (612 Da, Ligand)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Spinacia oleracea)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Spinacia oleracea)
Subcomplexes A and E in NDH complex from Arabidopsis
Resolution: 4.33 Å
EM Method: Single-particle
Fitted PDBs: 7wfg
Q-score: 0.232
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Arabidopsis thaliana)
- Ndho (17 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from Arabidopsis thaliana)
- Subcomplex a and e in ndh complex from arabidopsis (Complex from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from Arabidopsis thaliana)
- Ndht (10 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from Arabidopsis thaliana)
Cyclic electron transport supercomplex NDH-PSI from Arabidopsis
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 7wg5
Q-score: 0.278
Su X, Cao D, Pan X, Shi L, Liu Z, Dall'Osto L, Bassi R, Zhang X, Li M
Mol Plant (2022) 15 pp. 454-467 [ DOI: doi:10.1016/j.molp.2022.01.020 Pubmed: 35123031 ]
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Arabidopsis thaliana)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Photosystem i iron-sulfur center (9 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit iv a, chloroplastic (14 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (20 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (21 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (45 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Arabidopsis thaliana)
- Phylloquinone (450 Da, Ligand)
- Ndht (10 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (40 kDa, Protein from Arabidopsis thaliana)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Chlorophyll a-b binding protein 4, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 5, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Dodecyl-alpha-d-maltoside (510 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Arabidopsis thaliana)
- Iron/sulfur cluster (351 Da, Ligand)
- Ndho (17 kDa, Protein from Arabidopsis thaliana)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit v, chloroplastic (17 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 5, chloroplastic (85 kDa, Protein from Arabidopsis thaliana)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Cyclic electron transfer supercomplex from arabidopsis (Complex from Arabidopsis thaliana)
- Photosynthetic ndh subunit of lumenal location 1, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 2, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 3, chloroplastic (24 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit xi, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 2, chloroplastic (38 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Arabidopsis thaliana)
- Isoform 2 of photosynthetic ndh subunit of lumenal location 5, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a (893 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (57 kDa, Protein from Arabidopsis thaliana)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll a-b binding protein 6, chloroplastic (26 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 3-1, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 5, chloroplastic (27 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 1, chloroplastic (51 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit vi-2, chloroplastic (15 kDa, Protein from Arabidopsis thaliana)
- Chlorophyll b (907 Da, Ligand)
- Photosynthetic ndh subunit of lumenal location 4, chloroplastic (23 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ii-2, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
- Photosystem i chlorophyll a/b-binding protein 6, chloroplastic (29 kDa, Protein from Arabidopsis thaliana)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (25 kDa, Protein from Arabidopsis thaliana)
- Ndh dependent flow 6 (18 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Arabidopsis thaliana)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Arabidopsis thaliana)
- Photosynthetic ndh subunit of subcomplex b 3, chloroplastic (22 kDa, Protein from Arabidopsis thaliana)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7eu3
Q-score: 0.402
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit l (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit f (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit n (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit m (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex l3 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- Chloroplast ndh complex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit j (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
PSI-NDH supercomplex of Barley
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 7f9o
Q-score: 0.153
Shen L, Tang K, Wang W, Wang C, Wu H, Mao Z, An S, Chang S, Kuang T, Shen JR, Han G, Zhang X
Nature (2022) 601 pp. 649-654 [ DOI: doi:10.1038/s41586-021-04277-6 Pubmed: 34879391 ]
- Nad(p)h-quinone oxidoreductase chain 4, chloroplastic (56 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca5 (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i reaction center subunit iv, chloroplastic (15 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Unidentified stromal protein (5 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b1 (51 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit m, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Psi-ndh supercomplex of barley (Complex from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 4l, chloroplastic (11 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit iii, chloroplastic (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit ii, chloroplastic (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 1, chloroplastic (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit i, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit h, chloroplastic (44 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca4 (21 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex l1 (17 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (29 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nadh-plastoquinone oxidoreductase subunit 5 (87 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit j, chloroplastic (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit psak, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit l, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit xi, chloroplastic (22 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l4 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (24 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b4 (9 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll b (907 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 6, chloroplastic (19 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Photosynthetic ndh subunit of subcomplex b5 (18 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein lhca1 (26 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 2, chloroplastic (53 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit k, chloroplastic (27 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Nad(p)h-quinone oxidoreductase subunit 3, chloroplastic (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l2 (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b2 (38 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit n, chloroplastic (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex l5 (25 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Photosynthetic ndh subunit of subcomplex b3 (13 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit vi, chloroplastic (14 kDa, Protein from Hordeum vulgare subsp. spontaneum)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Hordeum vulgare subsp. spontaneum)
cryo-EM structure of cyanobacteria Fd-NDH-1L complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6l7o
Q-score: 0.433
Zhang C, Shuai J, Ran Z, Zhao J, Wu Z, Liao R, Wu J, Ma W, Lei M
Nat Commun (2020) 11 pp. 888-888 [ Pubmed: 32060291 DOI: doi:10.1038/s41467-020-14732-z ]
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit q (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Ferredoxin-1 (10 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Digitonin (1 kDa, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Fd-ndh-1l complex (Complex from Thermosynechococcus elongatus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit p (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Beta-carotene (536 Da, Ligand)
- Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0472 protein (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus BP-1)
cryo-EM structure of cyanobacteria NDH-1LdelV complex
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6l7p
Q-score: 0.426
Zhang C, Shuai J, Ran Z, Zhao J, Wu Z, Liao R, Wu J, Ma W, Lei M
Nat Commun (2020) 11 pp. 888-888 [ DOI: doi:10.1038/s41467-020-14732-z Pubmed: 32060291 ]
- Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Ndh-1ldelv (Complex from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit q (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Digitonin (1 kDa, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Beta-carotene (536 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit p (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Structure of the NDH-1MS complex from Thermosynechococcus elongatus
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6tjv
Q-score: 0.529
Schuller JM, Saura P, Thiemann J, Schuller SK, Gamiz-Hernandez AP, Kurisu G, Nowaczyk MM, Kaila VRI
Nat Commun (2020) 11 pp. 494-494 [ Pubmed: 31980611 DOI: doi:10.1038/s41467-020-14347-4 ]
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Ndh-1ms (Complex from Thermosynechococcus elongatus BP-1)
- Tlr0906 protein (51 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nadh dehydrogenase subunit 6 (21 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nadh dehydrogenase subunit 5 (66 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Zinc ion (65 Da, Ligand)
- Nadh dehydrogenase subunit 4 (53 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Water (18 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Chlorophyll a (893 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Tll0220 protein (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- (1s)-2-{[{[(2r)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl stearate (751 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Beta-carotene (536 Da, Ligand)
Supercomplex for cylic electron transport in cyanobacteria
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6khi
Q-score: 0.525
Pan X, Cao D, Xie F, Xu F, Su X, Mi H, Zhang X, Li M
Nat Commun (2020) 11 pp. 610-610 [ Pubmed: 32001694 DOI: doi:10.1038/s41467-020-14456-0 ]
- Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0472 protein (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Ferredoxin-1 (10 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Proton-translocating nadh-quinone dehydrogenase subunit p (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus (strain BP-1))
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Proton-translocating nadh-quinone dehydrogenase subunit q (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Beta-carotene (536 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Electron transport complex ndh-fd from cyanobacteria (Complex from Thermosynechococcus elongatus BP-1)
Supercomplex for electron transfer
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6khj
Q-score: 0.562
Pan X, Cao D, Xie F, Xu F, Su X, Mi H, Zhang X, Li M
Nat Commun (2020) 11 pp. 610-610 [ DOI: doi:10.1038/s41467-020-14456-0 Pubmed: 32001694 ]
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Proton-translocating nadh-quinone dehydrogenase subunit p (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit h (45 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 2 (55 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit n (16 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Proton-translocating nadh-quinone dehydrogenase subunit q (4 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Cylic electron transfer supercomplex from cyanobacteria (Complex from Thermosynechococcus elongatus BP-1)
- Iron/sulfur cluster (351 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit 3 (15 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit k (25 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nadh dehydrogenase subunit 5 (72 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Tlr0636 protein (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit j (19 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Nad(p)h-quinone oxidoreductase subunit l (8 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 1 (40 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit o (7 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit i (22 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Beta-carotene (536 Da, Ligand)
- Nadh-quinone oxidoreductase subunit j (21 kDa, Protein from Thermosynechococcus elongatus BP-1)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Nad(p)h-quinone oxidoreductase chain 4 1 (57 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit m (12 kDa, Protein from Thermosynechococcus elongatus BP-1)
- Nad(p)h-quinone oxidoreductase subunit 4l (11 kDa, Protein from Thermosynechococcus elongatus BP-1)