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was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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Tissue biology and disease modelling

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Structural biology

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Structural biology

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Epigenetics and neurobiology

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EMD-35720

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Cryo-EM structure of Euglena gracilis super-complex I+III2+IV, composite

Release date: Feb. 28, 2024
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 8iuf
Q-score: 0.615

He Z, Wu M, Tian H, Wang L, Hu Y, Han F, Zhou J, Wang Y, Zhou L

Nat Commun (2024) 15 pp. 1628-1628 [ DOI: doi:10.1038/s41467-024-46018-z Pubmed: 38388527 ]

Sample:

Cytochrome c oxidase subunit 2 (22 kDa, Protein from Euglena gracilis)
Cox7c (19 kDa, Protein from Euglena gracilis)
Nduca1 (48 kDa, Protein from Euglena gracilis)
Ndufs2 (45 kDa, Protein from Euglena gracilis)
Ndueg3 (63 kDa, Protein from Euglena gracilis)
Uqcrq (9 kDa, Protein from Euglena gracilis)
Ndufa2 (21 kDa, Protein from Euglena gracilis)
Coxeg6 (8 kDa, Protein from Euglena gracilis)
Ndueg9 (18 kDa, Protein from Euglena gracilis)
Ndufb7 (12 kDa, Protein from Euglena gracilis)
Nd1 (79 kDa, Protein from Euglena gracilis)
Ndufb3 (6 kDa, Protein from Euglena gracilis)
Ubiquinone-10 (863 Da, Ligand)
Uqcr9 (6 kDa, Protein from Euglena gracilis)
Ndufs5 (14 kDa, Protein from Euglena gracilis)
Nd2a (35 kDa, Protein from Euglena gracilis)
Ndufa3 (14 kDa, Protein from Euglena gracilis)
Heme c (618 Da, Ligand)
Ubiquinol-cytochrome-c reductase complex core protein 2, mitochondrial (51 kDa, Protein from Euglena gracilis)
Ndufb2 (17 kDa, Protein from Euglena gracilis)
Coxeg9 (31 kDa, Protein from Euglena gracilis)
Nadh-ubiquinone oxidoreductase chain 4 (56 kDa, Protein from Euglena gracilis)
Cytochrome b (42 kDa, Protein from Euglena gracilis)
Iron/sulfur cluster (351 Da, Ligand)
Nd2b (15 kDa, Protein from Euglena gracilis)
Ubiquinol-cytochrome-c reductase complex subunit ix, mitochondrial (11 kDa, Protein from Euglena gracilis)
S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
Putative nadh dehydrogenase subunit 6 (19 kDa, Protein from Euglena gracilis)
Ndufs7 (22 kDa, Protein from Euglena gracilis)
Cox5c (23 kDa, Protein from Euglena gracilis)
Ndufs1b (59 kDa, Protein from Euglena gracilis)
Coxeg5 (19 kDa, Protein from Euglena gracilis)
Ndufa5 (20 kDa, Protein from Euglena gracilis)
O-[(s)-hydroxy{[(2s)-2-hydroxy-3-(octadec-9-enoyloxy)propyl]oxy}phosphoryl]-l-serine (523 Da, Ligand)
Magnesium ion (24 Da, Ligand)
1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
Ndufa7 (16 kDa, Protein from Euglena gracilis)
Ndufab1-beta (14 kDa, Protein from Euglena gracilis)
Ndueg5 (29 kDa, Protein from Euglena gracilis)
Ndufb9 (18 kDa, Protein from Euglena gracilis)
Coxeg8 (24 kDa, Protein from Euglena gracilis)
Zinc ion (65 Da, Ligand)
Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
Nd4l (19 kDa, Protein from Euglena gracilis)
Ndufa6 (48 kDa, Protein from Euglena gracilis)
Poly(unk) (1 kDa, Protein from Euglena gracilis)
Ndufa1 (15 kDa, Protein from Euglena gracilis)
Ndufb8 (20 kDa, Protein from Euglena gracilis)
Cox7a (20 kDa, Protein from Euglena gracilis)
Ndufx (37 kDa, Protein from Euglena gracilis)
Ndufb6 (10 kDa, Protein from Euglena gracilis)
Ndufc2 (22 kDa, Protein from Euglena gracilis)
Cardiolipin (1 kDa, Ligand)
Ndufs6 (17 kDa, Protein from Euglena gracilis)
Cox5b-2 (19 kDa, Protein from Euglena gracilis)
Ndufa9 (54 kDa, Protein from Euglena gracilis)
Euglena gracilis respirasome supercomplex i+iii2+iv (Complex from Euglena gracilis)
Ndueg10 (14 kDa, Protein from Euglena gracilis)
Ndufb11 (13 kDa, Protein from Euglena gracilis)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Nduca3 (28 kDa, Protein from Euglena gracilis)
Cytochrome c oxidase subunit 1 (55 kDa, Protein from Euglena gracilis)
Ndueg11 (11 kDa, Protein from Euglena gracilis)
Nd3 (34 kDa, Protein from Euglena gracilis)
Ndufs1a (43 kDa, Protein from Euglena gracilis)
Ndufa8 (25 kDa, Protein from Euglena gracilis)
Nduca2 (28 kDa, Protein from Euglena gracilis)
Cox6b-1 (32 kDa, Protein from Euglena gracilis)
Ndueg7 (26 kDa, Protein from Euglena gracilis)
Uqcr10 (17 kDa, Protein from Euglena gracilis)
Protoporphyrin ix containing fe (616 Da, Ligand)
Ndueg2 (51 kDa, Protein from Euglena gracilis)
Coxeg3 (16 kDa, Protein from Euglena gracilis)
Ndufs3 (32 kDa, Protein from Euglena gracilis)
Ndufa11 (32 kDa, Protein from Euglena gracilis)
1,2-dilauroyl-sn-glycero-3-phosphate (535 Da, Ligand)
Cytochrome c1, heme protein (27 kDa, Protein from Euglena gracilis)
Copper (ii) ion (63 Da, Ligand)
Coxeg1 (27 kDa, Protein from Euglena gracilis)
1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
Ndueg6 (43 kDa, Protein from Euglena gracilis)
Cox4 (20 kDa, Protein from Euglena gracilis)
Ndueg4 (41 kDa, Protein from Euglena gracilis)
Nd5 (68 kDa, Protein from Euglena gracilis)
Ndufs8 (24 kDa, Protein from Euglena gracilis)
Ndufa13 (22 kDa, Protein from Euglena gracilis)
Potassium ion (39 Da, Ligand)
Coxeg10 (10 kDa, Protein from Euglena gracilis)
Euglena gracilis respirasome supercomplex i+iii2+iv (2 MDa, Complex from Euglena gracilis)
Flavin mononucleotide (456 Da, Ligand)
Ndufs4 (23 kDa, Protein from Euglena gracilis)
Ndueg8 (23 kDa, Protein from Euglena gracilis)
Coxeg7 (35 kDa, Protein from Euglena gracilis)
Ndufv2 (25 kDa, Protein from Euglena gracilis)
Ndueg13 (17 kDa, Protein from Euglena gracilis)
Ndufv1 (57 kDa, Protein from Euglena gracilis)
Uqcrfs1 (27 kDa, Protein from Euglena gracilis)
Uqcrh (8 kDa, Protein from Euglena gracilis)
Ndufab1-alpha (14 kDa, Protein from Euglena gracilis)
Uqcrb (27 kDa, Protein from Euglena gracilis)
Ndufa12 (33 kDa, Protein from Euglena gracilis)
Ndueg1 (53 kDa, Protein from Euglena gracilis)
Heme-a (852 Da, Ligand)
Mpp-beta (53 kDa, Protein from Euglena gracilis)
Coxeg4 (19 kDa, Protein from Euglena gracilis)
Ndufb5 (15 kDa, Protein from Euglena gracilis)
Ndufb10 (17 kDa, Protein from Euglena gracilis)
Cox6a (13 kDa, Protein from Euglena gracilis)
Ndufb4 (19 kDa, Protein from Euglena gracilis)
Ndueg11 (11 kDa, Protein from Euglena gracilis)

[Show more]

EMD-36108

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Cryo-EM composite map of Euglena gracilis complex I, turnover state

Release date: Feb. 28, 2024
Resolution: 2.87 Å
EM Method: Single-particle
Fitted PDBs: 8j9i
Q-score: 0.584

He Z, Wu M, Tian H, Wang L, Hu Y, Han F, Zhou J, Wang Y, Zhou L

Nat Commun (2024) 15 pp. 1628-1628 [ DOI: doi:10.1038/s41467-024-46018-z Pubmed: 38388527 ]

Sample:

Cardiolipin (1 kDa, Ligand)
Ndueg3 (46 kDa, Protein from Euglena gracilis)
Nduca1 (48 kDa, Protein from Euglena gracilis)
Ndufs2 (45 kDa, Protein from Euglena gracilis)
Ndufa9 (54 kDa, Protein from Euglena gracilis)
Ndufa13 (22 kDa, Protein from Euglena gracilis)
Ndueg10 (14 kDa, Protein from Euglena gracilis)
Ndufs6 (17 kDa, Protein from Euglena gracilis)
Ndufs7 (22 kDa, Protein from Euglena gracilis)
Ndufs8 (24 kDa, Protein from Euglena gracilis)
Potassium ion (39 Da, Ligand)
Ndufb11 (13 kDa, Protein from Euglena gracilis)
Ndufa5 (20 kDa, Protein from Euglena gracilis)
Fe2/s2 (inorganic) cluster (175 Da, Ligand)
Ndufs1a (43 kDa, Protein from Euglena gracilis)
Flavin mononucleotide (456 Da, Ligand)
Ndueg2 (50 kDa, Protein from Euglena gracilis)
Ndufs4 (23 kDa, Protein from Euglena gracilis)
Ndueg8 (23 kDa, Protein from Euglena gracilis)
Nduca3 (28 kDa, Protein from Euglena gracilis)
Ndufv2 (25 kDa, Protein from Euglena gracilis)
1,2-distearoyl-sn-glycerophosphoethanolamine (748 Da, Ligand)
Ndueg13 (17 kDa, Protein from Euglena gracilis)
Ndufa2 (21 kDa, Protein from Euglena gracilis)
Nd3 (34 kDa, Protein from Euglena gracilis)
Ndufv1 (57 kDa, Protein from Euglena gracilis)
Ndufa7 (16 kDa, Protein from Euglena gracilis)
Ndufab1-beta (14 kDa, Protein from Euglena gracilis)
Nd2b (15 kDa, Protein from Euglena gracilis)
Ndufa8 (25 kDa, Protein from Euglena gracilis)
Ndueg5 (29 kDa, Protein from Euglena gracilis)
Ndufb7 (12 kDa, Protein from Euglena gracilis)
Nduca2 (28 kDa, Protein from Euglena gracilis)
Ndufb9 (18 kDa, Protein from Euglena gracilis)
Nd1 (79 kDa, Protein from Euglena gracilis)
Ndueg7 (26 kDa, Protein from Euglena gracilis)
Ndufb3 (6 kDa, Protein from Euglena gracilis)
Ubiquinone-10 (863 Da, Ligand)
Ndufab1-alpha (14 kDa, Protein from Euglena gracilis)
Ndufa12 (33 kDa, Protein from Euglena gracilis)
Ndueg1 (53 kDa, Protein from Euglena gracilis)
Ndufs5 (14 kDa, Protein from Euglena gracilis)
Zinc ion (65 Da, Ligand)
Nadph dihydro-nicotinamide-adenine-dinucleotide phosphate (745 Da, Ligand)
Ndufa3 (14 kDa, Protein from Euglena gracilis)
Ndufs3 (32 kDa, Protein from Euglena gracilis)
Ndufb5 (15 kDa, Protein from Euglena gracilis)
Ndufa6 (48 kDa, Protein from Euglena gracilis)
Nd4l (19 kDa, Protein from Euglena gracilis)
Ndufa11 (32 kDa, Protein from Euglena gracilis)
Ndufs1b (59 kDa, Protein from Euglena gracilis)
Ndufb2 (17 kDa, Protein from Euglena gracilis)
Nd2a (35 kDa, Protein from Euglena gracilis)
Euglena gracilis respiratory complex i, turnover state (1 MDa, Complex from Euglena gracilis)
1,4-dihydronicotinamide adenine dinucleotide (665 Da, Ligand)
Ndufa1 (15 kDa, Protein from Euglena gracilis)
Ndufb8 (20 kDa, Protein from Euglena gracilis)
Ndufb10 (17 kDa, Protein from Euglena gracilis)
Ndueg12 (11 kDa, Protein from Euglena gracilis)
1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
Nadh-ubiquinone oxidoreductase chain 4 (56 kDa, Protein from Euglena gracilis)
Unk-unk-unk-unk-unk-unk-unk-unk-unk-unk-unk-unk (1 kDa, Protein from Euglena gracilis)
Iron/sulfur cluster (351 Da, Ligand)
Ndueg6 (43 kDa, Protein from Euglena gracilis)
Ndufx (37 kDa, Protein from Euglena gracilis)
Ndufb4 (19 kDa, Protein from Euglena gracilis)
Ndufb6 (10 kDa, Protein from Euglena gracilis)
Ndufc2 (22 kDa, Protein from Euglena gracilis)
Ndueg4 (41 kDa, Protein from Euglena gracilis)
Nd5 (68 kDa, Protein from Euglena gracilis)
Ndueg11 (11 kDa, Protein from Euglena gracilis)
S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)

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EMD-11877

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Cryo-EM structure of Polytomella Complex-I (membrane arm)

Release date: Dec. 8, 2021
Resolution: 2.97 Å
EM Method: Single-particle
Fitted PDBs: 7ar9
Q-score: 0.565

Klusch N, Senkler J, Yildiz O, Kuhlbrandt W, Braun HP

Plant Cell (2021) 33 pp. 2072-2091 [ DOI: doi:10.1093/plcell/koab092 Pubmed: 33768254 ]

Sample:

Cardiolipin (1 kDa, Ligand)
Nuop8 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Ashi (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
B9 (4 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nd3 (17 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Mwfe (8 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Pdsw (18 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nd4l (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
B14.7 (22 kDa, Protein from Polytomella sp. Pringsheim 198.80)
B12 (6 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Pgiv (11 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Unknown (4 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nuop5 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
C1-fdx (23 kDa, Protein from Polytomella sp. Pringsheim 198.80)
B14.5b (9 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nd2 (41 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Phosphatidylethanolamine (734 Da, Ligand)
Polytomella complex i - membrane arm (Complex from Polytomella sp. Pringsheim 198.80)
Mnll (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Ca2 (33 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nuop7 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Sdap1 (13 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nuop4 (9 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Cal (31 kDa, Protein from Polytomella sp. Pringsheim 198.80)
B15 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Ca3 (24 kDa, Protein from Polytomella sp. Pringsheim 198.80)
S-[2-({n-[(2r)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate (540 Da, Ligand)
Water (18 Da, Ligand)
Esss (19 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nd4 (48 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Aggg (7 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nd6 (15 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nd5 (58 kDa, Protein from Polytomella sp. Pringsheim 198.80)
B22 (14 kDa, Protein from Polytomella sp. Pringsheim 198.80)
(7s)-4-hydroxy-n,n,n-trimethyl-9-oxo-7-[(palmitoyloxy)methyl]-3,5,8-trioxa-4-phosphahexacosan-1-aminium 4-oxide (763 Da, Ligand)
Unknown (3 kDa, Protein from Polytomella sp. Pringsheim 198.80)
15 kda (8 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Nd1 (31 kDa, Protein from Polytomella sp. Pringsheim 198.80)
B16.6 (16 kDa, Protein from Polytomella sp. Pringsheim 198.80)
B18 (10 kDa, Protein from Polytomella sp. Pringsheim 198.80)
Kfyi (12 kDa, Protein from Polytomella sp. Pringsheim 198.80)

[Show more]

EMD-11242

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Membrane domain of open complex I during turnover

Release date: Oct. 7, 2020
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 6zka
Q-score: 0.643

Kampjut D, Sazanov LA

Science (2020) 370 [ Pubmed: 32972993 DOI: doi:10.1126/science.abc4209 ]

Sample:

Mitochondrial complex i, nd4l subunit (52 kDa, Protein from Sheep)
2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione (322 Da, Ligand from Sheep)
Nadh:ubiquinone oxidoreductase subunit b4 (15 kDa, Protein from Sheep)
Mitochondrial complex i, mnll subunit (7 kDa, Protein from Sheep)
Nadh:ubiquinone oxidoreductase subunit a3 (9 kDa, Protein from Sheep)
Nadh-ubiquinone oxidoreductase chain 1 (35 kDa, Protein from Sheep)
Nadh-ubiquinone oxidoreductase chain 4 (52 kDa, Protein from Sheep)
1,2-diacyl-sn-glycero-3-phosphoethanolamine (748 Da, Ligand)
Mitochondrial complex i, kfyi subunit (8 kDa, Protein from Sheep)
Nadh-ubiquinone oxidoreductase chain 6 (19 kDa, Protein from Sheep)
Nadh:ubiquinone oxidoreductase subunit b9 (21 kDa, Protein from Sheep)
Mitochondrial complex i, pdsw subunit (20 kDa, Protein from Sheep)
Nadh dehydrogenase [ubiquinone] 1 subunit c2 (14 kDa, Protein from Sheep)
Mitochondrial complex i, b14.7 subunit (14 kDa, Protein from Sheep)
Membrane domain of open complex i during turnover (1 MDa, Complex from Ovis aries)
Mitochondrial complex i, mwfe subunit (8 kDa, Protein from Sheep)
Nadh-ubiquinone oxidoreductase chain 3 (13 kDa, Protein from Sheep)
Nadh-ubiquinone oxidoreductase chain 4l (10 kDa, Protein from Sheep)
Adenosine monophosphate (347 Da, Ligand)
Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 (20 kDa, Protein from Sheep)
1,2-diacyl-sn-glycero-3-phosphocholine (790 Da, Ligand)
Cardiolipin (1 kDa, Ligand)
Nadh:ubiquinone oxidoreductase subunit b7 (16 kDa, Protein from Sheep)
Nadh dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 10, mitochondrial (40 kDa, Protein from Sheep)
Mitochondrial complex i, b17 subunit (15 kDa, Protein from Sheep)
Acyl carrier protein (17 kDa, Protein from Sheep)
Nadh:ubiquinone oxidoreductase subunit b3 (11 kDa, Protein from Sheep)
Nadh dehydrogenase [ubiquinone] 1 beta subcomplex subunit 8, mitochondrial (21 kDa, Protein from Sheep)
Myristic acid (228 Da, Ligand)
Water (18 Da, Ligand)
Nadh-ubiquinone oxidoreductase chain 5 (68 kDa, Protein from Sheep)
Mitochondrial complex i, b16.6 subunit (16 kDa, Protein from Sheep)
Nadh-ubiquinone oxidoreductase chain 2 (39 kDa, Protein from Sheep)
Nadh:ubiquinone oxidoreductase subunit s5 (12 kDa, Protein from Sheep)
Mitochondrial complex i, esss subunit (17 kDa, Protein from Sheep)
S-[2-({n-[(2s)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] tetradecanethioate (568 Da, Ligand)
Nadh:ubiquinone oxidoreductase subunit b2 (12 kDa, Protein from Sheep)
Nadh:ubiquinone oxidoreductase subunit b5 (21 kDa, Protein from Sheep)

[Show more]

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