Cryo-EM structure of the CBC-ALYREF complex
Resolution: 3.22 Å
EM Method: Single-particle
Fitted PDBs: 8srr
Q-score: 0.458
Clarke BP, Angelos AE, Mei M, Hill PS, Xie Y, Ren Y
eLife (2024) 12 [ DOI: doi:10.7554/eLife.91432 Pubmed: 39282949 ]
- Nuclear cap-binding protein subunit 2 (18 kDa, Protein from Homo sapiens)
- Cryo-em structure of an mrna export factor (Complex from Homo sapiens)
- Nuclear cap-binding protein subunit 1 (91 kDa, Protein from Homo sapiens)
- Rna and export factor binding protein 2 (17 kDa, Protein from Mus musculus)
- 7n-methyl-8-hydroguanosine-5'-diphosphate (458 Da, Ligand)
Cryo-EM structure of the human cap binding complex (CBC)
Resolution: 3.38 Å
EM Method: Single-particle
Fitted PDBs: 8suy
Q-score: 0.43
Clarke BP, Angelos AE, Mei M, Hill PS, Xie Y, Ren Y
eLife (2024) 12 [ DOI: doi:10.7554/eLife.91432 Pubmed: 39282949 ]
- Nuclear cap-binding protein subunit 2 (18 kDa, Protein from Homo sapiens)
- Cryo-em structure of an mrna export factor (Complex from Homo sapiens)
- Nuclear cap-binding protein subunit 1 (91 kDa, Protein from Homo sapiens)
- 7n-methyl-8-hydroguanosine-5'-diphosphate (458 Da, Ligand)
Structure of the human nuclear cap-binding complex bound to NCBP3(560-620) and cap-analogue m7GpppG
Resolution: 3.19 Å
EM Method: Single-particle
Fitted PDBs: 8by6
Q-score: 0.483
Dubiez E, Pellegrini E, Finderup Brask M, Garland W, Foucher AE, Huard K, Heick Jensen T, Cusack S, Kadlec J
Cell Rep (2024) 43 pp. 113639-113639 [ DOI: doi:10.1016/j.celrep.2023.113639 Pubmed: 38175753 ]
- 7-methyl-guanosine-5'-triphosphate-5'-guanosine (803 Da, Ligand)
- Nuclear cap-binding protein subunit 1 (89 kDa, Protein from Homo sapiens)
- Nuclear cap-binding protein subunit 2 (18 kDa, Protein from Homo sapiens)
- Nuclear cap-binding protein subunit 3 (6 kDa, Protein from Homo sapiens)
- Ternary complex of cbp80, cbp20 and ncbp3 with bound m7gpppg (Complex from Homo sapiens)
Structure of the human nuclear cap-binding complex bound to ARS2[147-871] and m7GTP
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 8pmp
Q-score: 0.318
Dubiez E, Pellegrini E, Finderup Brask M, Garland W, Foucher AE, Huard K, Heick Jensen T, Cusack S, Kadlec J
Cell Rep (2024) 43 pp. 113639-113639 [ DOI: doi:10.1016/j.celrep.2023.113639 Pubmed: 38175753 ]
- 7n-methyl-8-hydroguanosine-5'-triphosphate (539 Da, Ligand)
- Nuclear cap-binding protein subunit 1 (89 kDa, Protein from Homo sapiens)
- Nuclear cap-binding protein subunit 2 (18 kDa, Protein from Homo sapiens)
- Structure of the human nuclear cap-binding complex bound to ars2[147-871] and m7gtp (Complex from Homo sapiens)
- Serrate rna effector molecule homolog (83 kDa, Protein from Homo sapiens)
Structure of the human nuclear cap-binding complex bound to PHAX and m7G-capped RNA
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 8pnt
Q-score: 0.419
Dubiez E, Pellegrini E, Finderup Brask M, Garland W, Foucher AE, Huard K, Heick Jensen T, Cusack S, Kadlec J
Cell Rep (2024) 43 pp. 113639-113639 [ DOI: doi:10.1016/j.celrep.2023.113639 Pubmed: 38175753 ]
- 7n-methyl-8-hydroguanosine-5'-triphosphate (539 Da, Ligand)
- Phosphorylated adapter rna export protein (44 kDa, Protein from Homo sapiens)
- Nuclear cap-binding protein subunit 1 (89 kDa, Protein from Homo sapiens)
- Nuclear cap-binding protein subunit 2 (18 kDa, Protein from Homo sapiens)
- Structure of the human nuclear cap-binding complex bound to phax and m7g-capped rna (Complex from Homo sapiens)
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 7abg
Q-score: 0.147
Townsend C, Leelaram MN, Agafonov DE, Dybkov O, Will CL, Bertram K, Urlaub H, Kastner B, Stark H, Luhrmann R
Science (2020) 370 [ Pubmed: 33243851 DOI: doi:10.1126/science.abc3753 ]
- Cell division cycle 5-like protein (92 kDa, Protein from Homo sapiens)
- Splicing factor 3a subunit 3 (58 kDa, Protein from Homo sapiens)
- Pre-mrna-splicing factor rbm22 (46 kDa, Protein from Homo sapiens)
- Splicing factor 3b subunit 1 (146 kDa, Protein from Homo sapiens)
- U6 snrna-associated sm-like protein lsm8 (10 kDa, Protein from Homo sapiens)
- Ubiquitin-like protein 5 (8 kDa, Protein from Homo sapiens)
- U6 snrna-associated sm-like protein lsm4 (15 kDa, Protein from Homo sapiens)
- U6 snrna-associated sm-like protein lsm6 (9 kDa, Protein from Homo sapiens)
- U5 small nuclear ribonucleoprotein 200 kda helicase (244 kDa, Protein from Homo sapiens)
- Splicing factor 3a subunit 2 (49 kDa, Protein from Homo sapiens)
- Splicing factor 3b subunit 6 (14 kDa, Protein from Homo sapiens)
- Snw domain-containing protein 1 (61 kDa, Protein from Homo sapiens)
- Protein bud31 homolog (17 kDa, Protein from Homo sapiens)
- Splicing factor 3a subunit 1 (88 kDa, Protein from Homo sapiens)
- Splicing factor 3b subunit 4 (44 kDa, Protein from Homo sapiens)
- U2 small nuclear ribonucleoprotein b'' (25 kDa, Protein from Homo sapiens)
- Microfibrillar-associated protein 1 (52 kDa, Protein from Homo sapiens)
- U2 snrna (60 kDa, RNA from Homo sapiens)
- 7-methyl-guanosine-5'-triphosphate-5'-guanosine (803 Da, Ligand)
- Small nuclear ribonucleoprotein g (8 kDa, Protein from Homo sapiens)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Spliceosome-associated protein cwc15 homolog (26 kDa, Protein from Homo sapiens)
- Phd finger-like domain-containing protein 5a (12 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein f (9 kDa, Protein from Homo sapiens)
- U2 small nuclear ribonucleoprotein a' (28 kDa, Protein from Homo sapiens)
- U6 snrna-associated sm-like protein lsm7 (11 kDa, Protein from Homo sapiens)
- Serine/arginine repetitive matrix protein 1 (102 kDa, Protein from Homo sapiens)
- U6 snrna-associated sm-like protein lsm3 (11 kDa, Protein from Homo sapiens)
- Smad nuclear-interacting protein 1 (45 kDa, Protein from Homo sapiens)
- Splicing factor 3b subunit 3 (135 kDa, Protein from Homo sapiens)
- U5 snrna (36 kDa, RNA from Homo sapiens)
- Nuclear cap-binding protein subunit 2 (18 kDa, Protein from Homo sapiens)
- U5 small nuclear ribonucleoprotein 40 kda protein (39 kDa, Protein from Homo sapiens)
- Pre-mrna-processing-splicing factor 8 (273 kDa, Protein from Homo sapiens)
- Ww domain-binding protein 11 (70 kDa, Protein from Homo sapiens)
- Inositol hexakisphosphate (660 Da, Ligand)
- U6 snrna-associated sm-like protein lsm2 (10 kDa, Protein from Homo sapiens)
- Pleiotropic regulator 1 (57 kDa, Protein from Homo sapiens)
- Minx m3 pre-mrna (73 kDa, RNA from synthetic construct)
- Splicing factor 3b subunit 5 (10 kDa, Protein from Homo sapiens)
- Transcription elongation regulator 1 (124 kDa, Protein from Homo sapiens)
- U6 snrna (34 kDa, RNA from Homo sapiens)
- 116 kda u5 small nuclear ribonucleoprotein component (109 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Pre-bact-1 spliceosomal complex (Complex from Homo sapiens)
- Pre-mrna-splicing factor 38a (37 kDa, Protein from Homo sapiens)
- Splicing factor 3b subunit 2 (100 kDa, Protein from Homo sapiens)
- Serine/arginine-rich splicing factor 1 (27 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein e (10 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d2 (13 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d1 (13 kDa, Protein from Homo sapiens)
- Zinc finger matrin-type protein 2 (23 kDa, Protein from Homo sapiens)
- Nuclear cap-binding protein subunit 1 (91 kDa, Protein from Homo sapiens)
- U6 snrna-associated sm-like protein lsm5 (9 kDa, Protein from Homo sapiens)
- Pre-bact-1 spliceosomal complex (Complex)
- Small nuclear ribonucleoprotein-associated proteins b and b' (24 kDa, Protein from Homo sapiens)
- Small nuclear ribonucleoprotein sm d3 (13 kDa, Protein from Homo sapiens)