Nup93 in complex with 5-Nup93 inhibitory NB and 15-Nup93 tracking NB
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7zox
Q-score: 0.393
Sola Colom M, Fu Z, Gunkel P, Guttler T, Trakhanov S, Srinivasan V, Gregor K, Pleiner T, Gorlich D
EMBO J (2024) [ Pubmed: 38649536 DOI: doi:10.1038/s44318-024-00081-w ]
- Nup93 in complex with 5-nup93 inhibitory nb and 15-nup93 tracking nb (100 kDa, Complex from Xenopus laevis, Vicugna pacos)
- Xhnup93-nb4i (13 kDa, Protein from Vicugna pacos)
- Nuclear pore complex protein nup93 (74 kDa, Protein from Xenopus laevis)
- Xnup93-nb2t (12 kDa, Protein from Vicugna pacos)
The cryo-EM map of the core region from the X. laevis NPC CR subunit
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7fik
Q-score: 0.346
Zhu X, Huang G, Zeng C, Zhan X, Liang K, Xu Q, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y
Science (2022) 376 pp. eabl8280-eabl8280 [ DOI: doi:10.1126/science.abl8280 Pubmed: 35679404 ]
- Nucleoporin nup88a (82 kDa, Protein from Xenopus laevis)
- Nucleoporin seh1-b (39 kDa, Protein from Xenopus laevis)
- Nup155-prov protein (154 kDa, Protein from Xenopus laevis)
- Nup358 complex, clamps (322 kDa, Protein from Xenopus laevis)
- Nup98 (13 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Protein sec13 homolog (35 kDa, Protein from Xenopus laevis)
- Xenopus laevis nuclear pore complex (npc) (Complex from Xenopus laevis)
- Nuclear pore complex protein nup133 (111 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- Outer nup160 (162 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup98-nup96 (191 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
Human nuclear pore complex (dilated)
Mosalaganti S, Obarska-Kosinska A, Siggel M, Taniguchi R, Turonova B, Zimmerli CE, Buczak K, Schmidt FH, Margiotta E, Mackmull MT, Hagen WJH, Hummer G, Kosinski J, Beck M
Science (2022) 376 pp. eabm9506-eabm9506 [ Pubmed: 35679397 DOI: doi:10.1126/science.abm9506 ]
- Nuclear pore complex protein nup96 (106 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup98 (91 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Homo sapiens)
- Nucleoporin seh1 (39 kDa, Protein from Homo sapiens)
- Nucleoporin nup35 (34 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup160 (162 kDa, Protein from Homo sapiens)
- Protein elys (252 kDa, Protein from Homo sapiens)
- Nuclear pore membrane glycoprotein 210 (205 kDa, Protein from Homo sapiens)
- Nucleoporin nup188 homolog (196 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup107 (106 kDa, Protein from Homo sapiens)
- Nucleoporin nup37 (36 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup155 (155 kDa, Protein from Homo sapiens)
- Nucleoporin ndc1 (76 kDa, Protein from Homo sapiens)
- Nucleoporin p54 (55 kDa, Protein from Homo sapiens)
- Protein sec13 homolog (35 kDa, Protein from Homo sapiens)
- Human nuclear pore complex from hek cells (Cellular component from Homo sapiens)
- E3 sumo-protein ligase ranbp2 (358 kDa, Protein from Homo sapiens)
- Nucleoporin nup43 (42 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup88 (83 kDa, Protein from Homo sapiens)
- Nuclear pore glycoprotein p62 (53 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup133 (129 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup205 (228 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Homo sapiens)
- Aladin (59 kDa, Protein from Homo sapiens)
- Nucleoporin p58/p45 (60 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup214 (213 kDa, Protein from Homo sapiens)
Human nuclear pore complex (constricted)
Resolution: 12.0 Å
EM Method: Subtomogram averaging
Fitted PDBs: 7r5k
Q-score: 0.034
Mosalaganti S, Obarska-Kosinska A, Siggel M, Taniguchi R, Turonova B, Zimmerli CE, Buczak K, Schmidt FH, Margiotta E, Mackmull MT, Hagen WJH, Hummer G, Kosinski J, Beck M
Science (2022) 376 pp. eabm9506-eabm9506 [ Pubmed: 35679397 DOI: doi:10.1126/science.abm9506 ]
- Nuclear pore complex protein nup96 (106 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup98 (91 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Homo sapiens)
- Nucleoporin seh1 (39 kDa, Protein from Homo sapiens)
- Nucleoporin nup35 (34 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup160 (162 kDa, Protein from Homo sapiens)
- Protein elys (252 kDa, Protein from Homo sapiens)
- Nuclear pore membrane glycoprotein 210 (205 kDa, Protein from Homo sapiens)
- Nucleoporin nup188 homolog (196 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup107 (106 kDa, Protein from Homo sapiens)
- Nucleoporin nup37 (36 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup155 (155 kDa, Protein from Homo sapiens)
- Nucleoporin ndc1 (76 kDa, Protein from Homo sapiens)
- Nucleoporin p54 (55 kDa, Protein from Homo sapiens)
- Protein sec13 homolog (35 kDa, Protein from Homo sapiens)
- E3 sumo-protein ligase ranbp2 (358 kDa, Protein from Homo sapiens)
- Nucleoporin nup43 (42 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup88 (83 kDa, Protein from Homo sapiens)
- Nuclear pore complex (120 MDa, Cellular component from Homo sapiens)
- Nuclear pore glycoprotein p62 (53 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup133 (129 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup205 (228 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Homo sapiens)
- Aladin (59 kDa, Protein from Homo sapiens)
- Nucleoporin p58/p45 (60 kDa, Protein from Homo sapiens)
- Nuclear pore complex protein nup214 (213 kDa, Protein from Homo sapiens)
Cryo-EM structure of the IR subunit from X. laevis NPC
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 7wkk
Q-score: 0.349
Huang G, Zhan X, Zeng C, Liang K, Zhu X, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y
Cell Res (2022) 32 pp. 451-460 [ Pubmed: 35301439 DOI: doi:10.1038/s41422-022-00633-x ]
- Nucleoporin ndc1 (74 kDa, Protein from Xenopus laevis)
- Nup155-prov protein (154 kDa, Protein from Xenopus laevis)
- Aaas-prov protein (57 kDa, Protein from Xenopus laevis)
- Nup54 (58 kDa, Protein from Xenopus laevis)
- Mgc84997 protein (61 kDa, Protein from Xenopus laevis)
- The ir subunit (Complex from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Nup188 domain-containing protein (195 kDa, Protein from Xenopus laevis)
- Il4i1 protein (55 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
Cryo-EM structure of the NR subunit from X. laevis NPC
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 7wb4
Q-score: 0.214
Huang G, Zhan X, Zeng C, Zhu X, Liang K, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y
Cell Res (2022) 32 pp. 349-358 [ DOI: doi:10.1038/s41422-021-00610-w Pubmed: 35177819 ]
- Protein elys (268 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
- Nucleoporin seh1-b (39 kDa, Protein from Xenopus laevis)
- Nup155-prov protein (154 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- The nr subunit (Complex from Xenopus laevis)
- Outer nup160 (162 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup96 (105 kDa, Protein from Xenopus laevis)
- Gator complex protein sec13 (35 kDa, Protein from Xenopus laevis)
Structure of Xenopus laevis NPC nuclear ring asymmetric unit
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 7vci
Q-score: 0.13
Tai L, Zhu Y, Ren H, Huang X, Zhang C, Sun F
Protein Cell (2022) 13 pp. 760-777 [ Pubmed: 35015240 DOI: doi:10.1007/s13238-021-00895-y ]
- Protein elys (268 kDa, Protein from Xenopus laevis)
- Nuclear pore complex (Complex from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
- Nucleoporin seh1-a (39 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup96 (104 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Nup160 (163 kDa, Protein from Xenopus laevis)
- Gator complex protein sec13 (35 kDa, Protein from Xenopus laevis)
Cryo-EM structure of Xenopus laevis nuclear pore complex cytoplasmic ring subunit
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 7vop
Q-score: 0.086
Tai L, Zhu Y, Ren H, Huang X, Zhang C, Sun F
Protein Cell (2022) 13 pp. 760-777 [ Pubmed: 35015240 DOI: doi:10.1007/s13238-021-00895-y ]
- Nucleoporin seh1-a (39 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Nup358 (325 kDa, Protein from Xenopus laevis)
- Nuclear pore complex cytoplasmic ring (Complex from Xenopus laevis)
- Nup88a protein (82 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup96 (104 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- Nucleoporin can (209 kDa, Protein from Xenopus laevis)
- Il4i1 protein (55 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nucleoporin 160kda (160 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
- Gator complex protein sec13 (35 kDa, Protein from Xenopus laevis)