Double nuclear outer ring of Nup84-complexes from the yeast NPC
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 8tie
Q-score: 0.08
Akey CW, Echeverria I, Ouch C, Nudelman I, Shi Y, Wang J, Chait BT, Sali A, Fernandez-Martinez J, Rout MP
Mol Cell (2023) 83 pp. 3283-3302.e5 [ DOI: doi:10.1016/j.molcel.2023.08.025 Pubmed: 37738963 ]
- Nucleoporin nup120 (120 kDa, Protein from Saccharomyces cerevisiae)
- Nuclear pore complex (Complex from Saccharomyces cerevisiae)
- Nucleoporin nup84 (83 kDa, Protein from Saccharomyces cerevisiae)
- Nup133 isoform 1 (133 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin seh1 (34 kDa, Protein from Saccharomyces cerevisiae)
- Double nup84 y-complex (Complex from Saccharomyces cerevisiae)
- Nup145 isoform 1 (145 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin nup85 (84 kDa, Protein from Saccharomyces cerevisiae)
- Protein transport protein sec13 (33 kDa, Protein from Saccharomyces cerevisiae)
The cryo-EM map of the core region from the X. laevis NPC CR subunit
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7fik
Q-score: 0.346
Zhu X, Huang G, Zeng C, Zhan X, Liang K, Xu Q, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y
Science (2022) 376 pp. eabl8280-eabl8280 [ DOI: doi:10.1126/science.abl8280 Pubmed: 35679404 ]
- Nucleoporin nup88a (82 kDa, Protein from Xenopus laevis)
- Nucleoporin seh1-b (39 kDa, Protein from Xenopus laevis)
- Nup155-prov protein (154 kDa, Protein from Xenopus laevis)
- Nup358 complex, clamps (322 kDa, Protein from Xenopus laevis)
- Nup98 (13 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Protein sec13 homolog (35 kDa, Protein from Xenopus laevis)
- Xenopus laevis nuclear pore complex (npc) (Complex from Xenopus laevis)
- Nuclear pore complex protein nup133 (111 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- Outer nup160 (162 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup98-nup96 (191 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
Cryo-EM structure of the SEA complex (consensus map)
Resolution: 2.95 Å
EM Method: Single-particle
Fitted PDBs: 8adl
Q-score: 0.218
Tafur L, Hinterndorfer K, Gabus C, Lamanna C, Bergmann A, Sadian Y, Hamdi F, Kyrilis FL, Kastritis PL, Loewith R
Nature (2022) 611 pp. 399-404 [ DOI: doi:10.1038/s41586-022-05370-0 Pubmed: 36289347 ]
- Maintenance of telomere capping protein 5 (131 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin seh1 (39 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- Nitrogen permease regulator 3 (130 kDa, Protein from Saccharomyces cerevisiae)
- Seh1-associated complex (seac) (2 MDa, Complex from Saccharomyces cerevisiae)
- Nitrogen permease regulator 2 (69 kDa, Protein from Saccharomyces cerevisiae)
- Vacuolar membrane-associated protein iml1 (182 kDa, Protein from Saccharomyces cerevisiae)
- Seh-associated protein 4 (117 kDa, Protein from Saccharomyces cerevisiae)
- Protein transport protein sec13 (33 kDa, Protein from Saccharomyces cerevisiae)
- Restriction of telomere capping protein 1 (149 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 3.66 Å
EM Method: Single-particle
Fitted PDBs: 7uhy
Q-score: 0.415
Valenstein ML, Rogala KB, Lalgudi PV, Brignole EJ, Gu X, Saxton RA, Chantranupong L, Kolibius J, Quast JP, Sabatini DM
Nature (2022) 607 pp. 610-616 [ Pubmed: 35831510 DOI: doi:10.1038/s41586-022-04939-z ]
- Zinc ion (65 Da, Ligand)
- Isoform b of nucleoporin seh1 (46 kDa, Protein from Homo sapiens)
- Gator complex protein mios (100 kDa, Protein from Homo sapiens)
- Protein sec13 homolog (35 kDa, Protein from Homo sapiens)
- Unknown (1 kDa, Protein from Homo sapiens)
- Gator complex protein wdr59 (109 kDa, Protein from Homo sapiens)
- Unknown (698 Da, Protein from Homo sapiens)
- Gator complex protein wdr24 (88 kDa, Protein from Homo sapiens)
- Human gator2 (1 MDa, Complex from Homo sapiens)
Cryo-EM structure of the NR subunit from X. laevis NPC
Resolution: 5.6 Å
EM Method: Single-particle
Fitted PDBs: 7wb4
Q-score: 0.214
Huang G, Zhan X, Zeng C, Zhu X, Liang K, Zhao Y, Wang P, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y
Cell Res (2022) 32 pp. 349-358 [ DOI: doi:10.1038/s41422-021-00610-w Pubmed: 35177819 ]
- Protein elys (268 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
- Nucleoporin seh1-b (39 kDa, Protein from Xenopus laevis)
- Nup155-prov protein (154 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- The nr subunit (Complex from Xenopus laevis)
- Outer nup160 (162 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup96 (105 kDa, Protein from Xenopus laevis)
- Gator complex protein sec13 (35 kDa, Protein from Xenopus laevis)
Structure of Xenopus laevis NPC nuclear ring asymmetric unit
Resolution: 8.1 Å
EM Method: Single-particle
Fitted PDBs: 7vci
Q-score: 0.13
Tai L, Zhu Y, Ren H, Huang X, Zhang C, Sun F
Protein Cell (2022) 13 pp. 760-777 [ Pubmed: 35015240 DOI: doi:10.1007/s13238-021-00895-y ]
- Protein elys (268 kDa, Protein from Xenopus laevis)
- Nuclear pore complex (Complex from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
- Nucleoporin seh1-a (39 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup96 (104 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Nup160 (163 kDa, Protein from Xenopus laevis)
- Gator complex protein sec13 (35 kDa, Protein from Xenopus laevis)
Cryo-EM structure of Xenopus laevis nuclear pore complex cytoplasmic ring subunit
Resolution: 8.7 Å
EM Method: Single-particle
Fitted PDBs: 7vop
Q-score: 0.086
Tai L, Zhu Y, Ren H, Huang X, Zhang C, Sun F
Protein Cell (2022) 13 pp. 760-777 [ Pubmed: 35015240 DOI: doi:10.1007/s13238-021-00895-y ]
- Nucleoporin seh1-a (39 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Nup358 (325 kDa, Protein from Xenopus laevis)
- Nuclear pore complex cytoplasmic ring (Complex from Xenopus laevis)
- Nup88a protein (82 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup96 (104 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup93 (93 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)
- Nucleoporin can (209 kDa, Protein from Xenopus laevis)
- Il4i1 protein (55 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nucleoporin 160kda (160 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
- Gator complex protein sec13 (35 kDa, Protein from Xenopus laevis)
Double nuclear outer ring from the isolated yeast NPC
Resolution: 11.6 Å
EM Method: Single-particle
Fitted PDBs: 7n84
Q-score: 0.063
Akey CW, Singh D, Ouch C, Echeverria I, Nudelman I, Varberg JM, Yu Z, Fang F, Shi Y, Wang J, Salzberg D, Song K, Xu C, Gumbart JC, Suslov S, Unruh J, Jaspersen SL, Chait BT, Sali A, Fernandez-Martinez J, Ludtke SJ, Villa E, Rout MP
Cell (2022) 185 pp. 361-378.e25 [ Pubmed: 34982960 DOI: doi:10.1016/j.cell.2021.12.015 ]
- Nucleoporin seh1 (39 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin 145c (81 kDa, Protein from Saccharomyces cerevisiae)
- Yeast double outer ring (10 MDa, Complex from Saccharomyces cerevisiae)
- Nucleoporin nup120 (120 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin nup84 (83 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin nup188 (188 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin nup133 (133 kDa, Protein from Saccharomyces cerevisiae)
- Unknown (5 kDa, Protein from Saccharomyces cerevisiae)
- Nucleoporin nup85 (84 kDa, Protein from Saccharomyces cerevisiae)
- Protein transport protein sec13 (33 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 5.5 Å
EM Method: Single-particle
Fitted PDBs: 6lk8
Q-score: 0.089
Huang G, Zhang Y, Zhu X, Zeng C, Wang Q, Zhou Q, Tao Q, Liu M, Lei J, Yan C, Shi Y
Cell Res (2020) 30 pp. 520-531 [ Pubmed: 32376910 DOI: doi:10.1038/s41422-020-0319-4 ]
- Nup214 complex coiled coil region 2, helix 3 (2 kDa, Protein from Xenopus laevis)
- Mgc154553 protein (41 kDa, Protein from Xenopus laevis)
- Outer nup160 (162 kDa, Protein from Xenopus laevis)
- Mgc83295 protein (227 kDa, Protein from Xenopus laevis)
- Cytoplasmic ring subunit of xenopus laevis npc (Complex from Xenopus laevis)
- Nup214 complex coiled coil region 2, helix 2 (2 kDa, Protein from Xenopus laevis)
- Nup214 complex coiled coil region 1, helix 2 (6 kDa, Protein from Xenopus laevis)
- Nup214 complex coiled-coil region 1, helix 1 (5 kDa, Protein from Xenopus laevis)
- Mgc83926 protein (36 kDa, Protein from Xenopus laevis)
- Nucleoporin seh1-a (36 kDa, Protein from Xenopus laevis)
- Nup214 complex coiled coil region 1, helix 3 (6 kDa, Protein from Xenopus laevis)
- Nup358 complex, clamps (322 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup85 (75 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein (105 kDa, Protein from Xenopus laevis)
- Nuclear pore complex protein nup96 (105 kDa, Protein from Xenopus laevis)
- Gator complex protein sec13 (35 kDa, Protein from Xenopus laevis)
- Bridge domain (33 kDa, Protein from Xenopus laevis)
- Nup214 complex coiled coil region 2, helix 1 (2 kDa, Protein from Xenopus laevis)
- Outer nup133 (127 kDa, Protein from Xenopus laevis)