Near-atomic structure of five-fold averaged PBCV-1 capsid
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8h2i
Q-score: 0.362
Shao Q, Agarkova IV, Noel EA, Dunigan DD, Liu Y, Wang A, Guo M, Xie L, Zhao X, Rossmann MG, Van Etten JL, Klose T, Fang Q
Nat Commun (2022) 13 pp. 6476-6476 [ Pubmed: 36309542 DOI: doi:10.1038/s41467-022-34218-4 ]
- P23 (140 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv1 (58 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv4 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P21 (141 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P9 (23 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P16 (9 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P13 (11 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P12 (17 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P1v1 (57 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv3 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P15 (18 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P18 (16 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Major capsid protein (mcp) (48 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P5 (16 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P2 (63 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P6 (24 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P19 (43 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P11 (23 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv2 (55 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Paramecium bursaria chlorella virus 1 (Virus from Paramecium bursaria Chlorella virus 1)
- P4 (20 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P22 (137 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- Mcpv5 (45 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P3 (19 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P8 (19 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P17 (9 kDa, Protein from Paramecium bursaria Chlorella virus 1)
- P20 (137 kDa, Protein from Paramecium bursaria Chlorella virus 1)
Cryo-EM structure of 27a bound to E. coli RNAP and rrnBP1 promoter complex
Resolution: 2.94 Å
EM Method: Single-particle
Fitted PDBs: 7szk
Q-score: 0.462
Rajeswaran W, Ashkar SR, Lee PH, Yeomans L, Shin Y, Franzblau SG, Murakami KS, Showalter HD, Garcia GA
Acs Infect Dis. (2022) 8 pp. 1422-1438 [ Pubmed: 35772744 DOI: doi:10.1021/acsinfecdis.1c00636 ]
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- 27a bound to e. coli rnap and rrnbp1 promoter complex (Complex from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli K-12)
- (2s,7r,7ar,13ap,16z,18e,20s,21s,22r,23r,24r,25s,26r,27s,28e)-5,21,23-trihydroxy-27-methoxy-2,4,16,20,22,24,26-heptamethyl-10-[4-(2-methylpropyl)piperazin-1-yl]-12-({4-[(morpholin-4-yl)methyl]phenyl}methoxy)-1,6,15-trioxo-1,2,7,7a-tetrahydro-6h-2,7-(epoxypentadeca[1,11,13]trienoimino)[1]benzofuro[4,5-a]phenoxazin-25-yl acetate (1 kDa, Ligand)
- Rna polymerase sigma factor rpod (70 kDa, Protein from Escherichia coli K-12)
- Dna (5'-d(p*cp*tp*cp*gp*tp*ap*gp*ap*gp*tp*cp*cp*gp*tp*gp*tp*cp*a)-3') (19 kDa, DNA from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Dna (5'-d(p*cp*tp*cp*gp*tp*ap*gp*ap*gp*tp*cp*cp*gp*tp*gp*tp*cp*a)-3') (19 kDa, DNA from Escherichia coli K-12)
High resolution electron cryo-microscopy structure of the bacteriophage PR772
Resolution: 2.75 Å
EM Method: Single-particle
Fitted PDBs: 6q5u
Q-score: 0.574
Reddy HK, Hajdu J, Carroni M, Svenda M
eLife (2019) 8 [ DOI: doi:10.7554/eLife.48496 Pubmed: 31513011 ]
- Minor capsid protein (p30) (9 kDa, Protein from Enterobacteria phage PR772)
- Infectivity protein (p16) (12 kDa, Protein from Enterobacteria phage PR772)
- Penton protein (13 kDa, Protein from Enterobacteria phage PR772)
- Spike protein (34 kDa, Protein from Enterobacteria phage PR772)
- Bacteriophage pr772 (86 MDa, Complex from Enterobacteria phage PR772)
- Major capsid protein (p3) (43 kDa, Protein from Enterobacteria phage PR772)