Plastid-encoded RNA polymerase
Resolution: 2.49 Å
EM Method: Single-particle
Fitted PDBs: 8r5o
Q-score: 0.689
Vergara-Cruces A, Pramanick I, Pearce D, Vogirala VK, Byrne MJ, Low JKK, Webster MW
Cell (2024) 187 pp. 1145-1159.e21 [ DOI: doi:10.1016/j.cell.2024.01.036 Pubmed: 38428394 ]
- Dna-directed rna polymerase subunit beta'' (156 kDa, Protein from Sinapis alba)
- Ptac18 (16 kDa, Protein from Sinapis alba)
- Dna-directed rna polymerase subunit beta (121 kDa, Protein from Sinapis alba)
- Fln2 (68 kDa, Protein from Sinapis alba)
- Pap5 (60 kDa, Protein from Sinapis alba)
- Pap4 (30 kDa, Protein from Sinapis alba)
- Pap9 (34 kDa, Protein from Sinapis alba)
- Pap11 (85 kDa, Protein from Sinapis alba)
- Pap3 (79 kDa, Protein from Sinapis alba)
- Plastid-encoded rna polymerase (Complex from Sinapis alba)
- Water (18 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (78 kDa, Protein from Sinapis alba)
- Pap1 (103 kDa, Protein from Sinapis alba)
- Pap10 (20 kDa, Protein from Sinapis alba)
- Pap6 (52 kDa, Protein from Sinapis alba)
- Zinc ion (65 Da, Ligand)
- Pap2 (96 kDa, Protein from Sinapis alba)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Sinapis alba)
- Pap12 (18 kDa, Protein from Sinapis alba)
- Pap7 (55 kDa, Protein from Sinapis alba)
- Pap8 (38 kDa, Protein from Sinapis alba)
Structure of the plastid-encoded RNA polymerase complex (PEP) from Sinapis alba
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8qma
Q-score: 0.461
do Prado PFV, Ahrens FM, Liebers M, Ditz N, Braun HP, Pfannschmidt T, Hillen HS
Mol Cell (2024) 84 pp. 910- [ Pubmed: 38428434 DOI: doi:10.1016/j.molcel.2024.02.003 ]
- Dna-directed rna polymerase subunit beta'' (156 kDa, Protein from Sinapis alba)
- Fln2 (68 kDa, Protein from Sinapis alba)
- Pap5 (60 kDa, Protein from Sinapis alba)
- Plastid-encoded dna-dependent rna polymerase (pep) (1 MDa, Complex from Sinapis alba)
- Pap9 (34 kDa, Protein from Sinapis alba)
- Pap4 (30 kDa, Protein from Sinapis alba)
- Dna-directed rna polymerase subunit beta (121 kDa, Protein from Sinapis alba)
- Pap3 (79 kDa, Protein from Sinapis alba)
- Fe (iii) ion (55 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (78 kDa, Protein from Sinapis alba)
- Pap1 (103 kDa, Protein from Sinapis alba)
- Pap6 (52 kDa, Protein from Sinapis alba)
- Ptac18 (16 kDa, Protein from Sinapis alba)
- Pap10 (20 kDa, Protein from Sinapis alba)
- Zinc ion (65 Da, Ligand)
- Pap12 (dna-directed rna polymerase subunit omega) (18 kDa, Protein from Sinapis alba)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Sinapis alba)
- S-adenosylmethionine (398 Da, Ligand)
- Pap7 (55 kDa, Protein from Sinapis alba)
- Pap11 (85 kDa, Protein from Sinapis alba)
- Pap8 (38 kDa, Protein from Sinapis alba)
Plastid-encoded RNA polymerase transcription elongation complex
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 8ras
Q-score: 0.539
Vergara-Cruces A, Pramanick I, Pearce D, Vogirala VK, Byrne MJ, Low JKK, Webster MW
Cell (2024) 187 pp. 1145-1159.e21 [ DOI: doi:10.1016/j.cell.2024.01.036 Pubmed: 38428394 ]
- Dna-directed rna polymerase subunit beta'' (156 kDa, Protein from Sinapis alba)
- Plastid-encoded rna polymerase transcription elongation complex (Complex from Sinapis alba)
- Ptac18 (16 kDa, Protein from Sinapis alba)
- Rna (40-mer) (12 kDa, RNA from synthetic construct)
- Dna-directed rna polymerase subunit beta (121 kDa, Protein from Sinapis alba)
- Fln2 (68 kDa, Protein from Sinapis alba)
- Pap5 (60 kDa, Protein from Sinapis alba)
- Dna (81-mer) (24 kDa, DNA from DNA molecule)
- Pap4 (30 kDa, Protein from Sinapis alba)
- Pap9 (34 kDa, Protein from Sinapis alba)
- Pap11 (85 kDa, Protein from Sinapis alba)
- Pap3 (79 kDa, Protein from Sinapis alba)
- Water (18 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (78 kDa, Protein from Sinapis alba)
- Pap1 (103 kDa, Protein from Sinapis alba)
- Pap10 (20 kDa, Protein from Sinapis alba)
- Dna (81-mer) (25 kDa, DNA from DNA molecule)
- Pap6 (52 kDa, Protein from Sinapis alba)
- Magnesium ion (24 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Pap2 (96 kDa, Protein from Sinapis alba)
- S-adenosyl-l-homocysteine (384 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (37 kDa, Protein from Sinapis alba)
- Pap12 (18 kDa, Protein from Sinapis alba)
- Pap7 (55 kDa, Protein from Sinapis alba)
- Pap8 (38 kDa, Protein from Sinapis alba)