In situ PBS-PSII supercomplex from cyanobacterial Spirulina platensis
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8wql
Q-score: 0.264
You X, Zhang X, Xiao YN, Sun S, Sui SF
To Be Published
- Photosystem ii reaction center protein psb30 (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii cp43 reaction center protein (51 kDa, Protein from Arthrospira sp. FACHB-439)
- Psbu (10 kDa, Protein from Arthrospira sp. FACHB-439)
- Fe (ii) ion (55 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- In situ pbs-psii supercomplex (Cell from Arthrospira platensis)
- Lrc1 (29 kDa, Protein from Arthrospira sp. FACHB-439)
- C-phycocyanin alpha subunit (17 kDa, Protein from Arthrospira sp. FACHB-439)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Allophycocyanin alpha chain (17 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein j (3 kDa, Protein from Arthrospira sp. FACHB-439)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Arthrospira sp. FACHB-439)
- Psbq protein (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein y (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein m (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein z (6 kDa, Protein from Arthrospira sp. FACHB-439)
- Phycocyanin beta subunit (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii d2 protein (39 kDa, Protein from Arthrospira sp. FACHB-439)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Allophycocyanin beta-18 subunit (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Bicarbonate ion (61 Da, Ligand)
- Lpp1 (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii extrinsic protein o (30 kDa, Protein from Arthrospira sp. FACHB-439)
- Cytochrome b559 subunit beta (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein i (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Lpp2 (15 kDa, Protein from Arthrospira sp. FACHB-439)
- Lcm (102 kDa, Protein from Arthrospira sp. FACHB-439)
- Chlorophyll a (893 Da, Ligand)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein h (7 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii extrinsic protein v (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Chloride ion (35 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Arthrospira sp. FACHB-439)
- Calcium ion (40 Da, Ligand)
- Allophycocyanin-b alpha subunit (18 kDa, Protein from Arthrospira sp. FACHB-439)
- Phycocyanobilin (588 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Allophycocyanin beta chain (17 kDa, Protein from Arthrospira sp. FACHB-439)
- Beta-carotene (536 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein x (5 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii reaction center protein t (3 kDa, Protein from Arthrospira sp. FACHB-439)
- Photosystem ii protein d1 (39 kDa, Protein from Arthrospira sp. FACHB-439)
Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 8to2
Q-score: 0.592
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Translation initiation factor if-2 (12 kDa, Protein from Synechocystis sp. PCC 6803)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803)
- Complex of phycobilisome from synechocystis pcc 6803 bound to ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycocyanobilin (588 Da, Ligand)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 1.87 Å
EM Method: Single-particle
Fitted PDBs: 8to5
Q-score: 0.833
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ DOI: doi:10.1126/sciadv.adk7535 Pubmed: 38578996 ]
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. PCC 6803)
- Water (18 Da, Ligand)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. PCC 6803)
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. PCC 6803)
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Complex of phycobilisome from synechocystis pcc 6803 bound to ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 8tpj
Q-score: 0.675
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- Water (18 Da, Ligand)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome bound to ocp (Complex from Synechocystis sp. PCC 6803)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Phycocyanobilin (588 Da, Ligand)
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
Rod from high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 8tro
Q-score: 0.791
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- Water (18 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome bound to ocp (Complex from Synechocystis sp. PCC 6803)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycocyanobilin (588 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. PCC 6803)
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. PCC 6803)
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 8.9 kda linker polypeptide, phycocyanin-associated, rod (9 kDa, Protein from Synechocystis sp. PCC 6803)
Structure of the far-red light-absorbing allophycocyanin core expressed during FaRLiP
Resolution: 2.78 Å
EM Method: Single-particle
Fitted PDBs: 8uhe
Q-score: 0.457
Gisriel CJ, Shen G, Brudvig GW, Bryant DA
J Biol Chem (2023) 300 pp. 105590-105590 [ Pubmed: 38141759 DOI: doi:10.1016/j.jbc.2023.105590 ]
- Chloride ion (35 Da, Ligand)
- Apce2 (87 kDa, Protein from Synechococcus sp. PCC 7335)
- Apcd2 (17 kDa, Protein from Synechococcus sp. PCC 7335)
- Far-red light-absorbing allophycocyanin core (Complex from Synechococcus sp. PCC 7335)
- Apcd3 (20 kDa, Protein from Synechococcus sp. PCC 7335)
- Apcb2 (17 kDa, Protein from Synechococcus sp. PCC 7335)
- Phycocyanobilin (588 Da, Ligand)
- Apcd5 (17 kDa, Protein from Synechococcus sp. PCC 7335)
- Apcc (7 kDa, Protein from Synechococcus sp. PCC 7335)
- Apcf (18 kDa, Protein from Synechococcus sp. PCC 7335)
- Mesobiliverdin ix(alpha) (586 Da, Ligand)
Cryo-EM structure of CpcL-PBS from cyanobacterium Synechocystis sp. PCC 6803
Resolution: 2.64 Å
EM Method: Single-particle
Fitted PDBs: 8hfq
Q-score: 0.621
Zheng L, Zhang Z, Wang H, Zheng Z, Wang J, Liu H, Chen H, Dong C, Wang G, Weng Y, Gao N, Zhao J
Nat Commun (2023) 14 pp. 3961-3961 [ DOI: doi:10.1038/s41467-023-39689-7 Pubmed: 37407580 ]
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Photosystem i-associated linker protein cpcl (28 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Ferredoxin--nadp reductase (46 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycocyanobilin (588 Da, Ligand)
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Cryo-em structure of cpcl-pbs from cyanobacterium synechocystis sp. pcc 6803 (Complex from Synechocystis sp. PCC 6803)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. (strain PCC 6803 / Kazusa))
Helical rods of far-red light-absorbing allophycocyanin in Synechococcus sp.
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 8ddy
Q-score: 0.6
Gisriel CJ, Elias E, Shen G, Soulier NT, Flesher DA, Gunner MR, Brudvig GW, Croce R, Bryant DA
Sci Adv (2023) 9 pp. eadg0251-eadg0251 [ DOI: doi:10.1126/sciadv.adg0251 Pubmed: 36961897 ]
- Chloride ion (35 Da, Ligand)
- Water (18 Da, Ligand)
- Far-red light allophycocyanin (Complex from Synechococcus sp. 63AY4M1)
- Phycocyanobilin (588 Da, Ligand)
- Allophycocyanin subunit alpha (20 kDa, Protein from Synechococcus sp. 63AY4M1)
- Allophycocyanin subunit beta (17 kDa, Protein from Synechococcus sp. 63AY4M1)
In situ double-PBS-PSII-PSI-LHCs megacomplex from Porphyridium purpureum.
You X, Zhang X, Cheng J, Xiao Y, Ma J, Sun S, Zhang X, Wang HW, Sui SF
Nature (2023) 616 pp. 199-206 [ Pubmed: 36922595 DOI: doi:10.1038/s41586-023-05831-0 ]
- Chlorophyll a-b binding protein 1b-21, chloroplastic (19 kDa, Protein from Porphyridium purpureum)
- Lps1 (5 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 27.9 kda linker polypeptide, phycoerythrin-associated, rod (34 kDa, Protein from Porphyridium purpureum)
- C-phycocyanin beta subunit (18 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein j (3 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein i (4 kDa, Protein from Porphyridium purpureum)
- Photosystem ii protein d1 (39 kDa, Protein from Porphyridium purpureum)
- In situ double-pbs-psii-psi-lhcs megacomplex from porphyridium purpureum. (Cell from Porphyridium purpureum)
- Photosystem ii reaction center protein t (3 kDa, Protein from Porphyridium purpureum)
- Phycobilisome rod-core linker polypeptide (26 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 27.9 kda linker polypeptide, phycoerythrin-associated, rod (37 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (10 kDa, Protein from Porphyridium purpureum)
- Psbq' (22 kDa, Protein from Porphyridium purpureum)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Porphyridium purpureum)
- Chloride ion (35 Da, Ligand)
- Phycocyanobilin (588 Da, Ligand)
- Carsp2 (15 kDa, Protein from Porphyridium purpureum)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Porphyridium purpureum)
- Psab (82 kDa, Protein from Porphyridium purpureum)
- Cnt (10 kDa, Protein from Porphyridium purpureum)
- Psii_pbs31 domain-containing protein (22 kDa, Protein from Porphyridium purpureum)
- R-phycoerythrin gamma chain, chloroplastic (36 kDa, Protein from Porphyridium purpureum)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Carsp1 (24 kDa, Protein from Porphyridium purpureum)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ps ii complex 12 kda extrinsic protein (16 kDa, Protein from Porphyridium purpureum)
- B-phycoerythrin beta chain (18 kDa, Protein from Porphyridium purpureum)
- Photosystem ii cp43 reaction center protein (52 kDa, Protein from Porphyridium purpureum)
- Phycoerythrobilin (588 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod (53 kDa, Protein from Porphyridium purpureum)
- Beta-d-glucopyranose (180 Da, Ligand)
- Photosystem i subunit o (9 kDa, Protein from Porphyridium purpureum)
- Fucoxanthin-chlorophyll a-c binding protein, chloroplastic (18 kDa, Protein from Porphyridium purpureum)
- Lpp2 (17 kDa, Protein from Porphyridium purpureum)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Porphyridium purpureum)
- Cytochrome c550 (17 kDa, Protein from Porphyridium purpureum)
- Glycerol (92 Da, Ligand)
- Allophycocyanin beta subunit (17 kDa, Protein from Porphyridium purpureum)
- Phylloquinone (450 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Porphyridium purpureum)
- R-phycoerythrin gamma chain, chloroplastic (31 kDa, Protein from Porphyridium purpureum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Porphyridium purpureum)
- Psb34 (2 kDa, Protein from Porphyridium purpureum)
- Photosystem ii protein y (3 kDa, Protein from Porphyridium purpureum)
- Lrc4 (16 kDa, Protein from Porphyridium purpureum)
- Lr6 (46 kDa, Protein from Porphyridium purpureum)
- Psbm (10 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a-b binding protein, chloroplastic (18 kDa, Protein from Porphyridium purpureum)
- Oxygen-evolving enhancer protein (30 kDa, Protein from Porphyridium purpureum)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Porphyridium purpureum)
- Ferredoxin (10 kDa, Protein from Porphyridium purpureum)
- R-phycoerythrin gamma chain, chloroplastic (31 kDa, Protein from Porphyridium purpureum)
- Lrh (20 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit iv (6 kDa, Protein from Porphyridium purpureum)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Chlorophyll a-b binding protein 1b-21, chloroplastic (18 kDa, Protein from Porphyridium purpureum)
- Pheophytin a (871 Da, Ligand)
- Cytochrome b559 subunit beta (5 kDa, Protein from Porphyridium purpureum)
- Redcap (19 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a (893 Da, Ligand)
- (2s)-2,3-dihydroxypropyl octadecanoate (358 Da, Ligand)
- Fas1 domain-containing protein (26 kDa, Protein from Porphyridium purpureum)
- R-phycoerythrin gamma chain, chloroplastic (29 kDa, Protein from Porphyridium purpureum)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Allophycocyanin alpha subunit (17 kDa, Protein from Porphyridium purpureum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii reaction center x protein (4 kDa, Protein from Porphyridium purpureum)
- Psbw (3 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit ii (14 kDa, Protein from Porphyridium purpureum)
- Psar (12 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit xi (14 kDa, Protein from Porphyridium purpureum)
- Phycourobilin (590 Da, Ligand)
- Phycobilisome 31.8 kda linker polypeptide, phycoerythrin-associated, rod (39 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a-b binding protein 1b-21, chloroplastic (19 kDa, Protein from Porphyridium purpureum)
- Lpp1 (10 kDa, Protein from Porphyridium purpureum)
- Cytochrome c6 (8 kDa, Protein from Porphyridium purpureum)
- Linker4 (11 kDa, Protein from Porphyridium purpureum)
- Photosystem ii d2 protein (39 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 31.8 kda linker polypeptide, phycoerythrin-associated, rod (55 kDa, Protein from Porphyridium purpureum)
- Fas1 domain-containing protein (31 kDa, Protein from Porphyridium purpureum)
- Phycobiliprotein apce (99 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Porphyridium purpureum)
- C-phycocyanin alpha subunit (17 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a-b binding protein of lhcii type iii, chloroplastic (18 kDa, Protein from Porphyridium purpureum)
- Water (18 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Allophycocyanin beta 18 subunit (19 kDa, Protein from Porphyridium purpureum)
- Allophycocyanin gamma subunit (18 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit psak (6 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein h (7 kDa, Protein from Porphyridium purpureum)
- Fe (iii) ion (55 Da, Ligand)
- Lrc5 (30 kDa, Protein from Porphyridium purpureum)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein z (6 kDa, Protein from Porphyridium purpureum)
- Beta-carotene (536 Da, Ligand)
- Phycobilisome 31.8 kda linker polypeptide, phycoerythrin-associated, rod (27 kDa, Protein from Porphyridium purpureum)
- Phycoerythrin alpha subunit (17 kDa, Protein from Porphyridium purpureum)
In situ single-PBS-PSII-PSI-LHCs megacomplex.
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7y5e
Q-score: 0.318
You X, Zhang X, Cheng J, Xiao Y, Ma J, Sun S, Zhang X, Wang HW, Sui SF
Nature (2023) 616 pp. 199-206 [ Pubmed: 36922595 DOI: doi:10.1038/s41586-023-05831-0 ]
- Chlorophyll a-b binding protein 1b-21, chloroplastic (19 kDa, Protein from Porphyridium purpureum)
- Carsp2 (36 kDa, Protein from Porphyridium purpureum)
- Lps1 (5 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 27.9 kda linker polypeptide, phycoerythrin-associated, rod (34 kDa, Protein from Porphyridium purpureum)
- C-phycocyanin beta subunit (18 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein j (3 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein i (4 kDa, Protein from Porphyridium purpureum)
- Photosystem ii protein d1 (39 kDa, Protein from Porphyridium purpureum)
- Carsps1 (31 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein t (3 kDa, Protein from Porphyridium purpureum)
- Phycobilisome rod-core linker polypeptide (26 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 27.9 kda linker polypeptide, phycoerythrin-associated, rod (37 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (10 kDa, Protein from Porphyridium purpureum)
- Psbq' (22 kDa, Protein from Porphyridium purpureum)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Porphyridium purpureum)
- Psbl (4 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Porphyridium purpureum)
- Chloride ion (35 Da, Ligand)
- Phycocyanobilin (588 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Porphyridium purpureum)
- Linker4 (14 kDa, Protein from Porphyridium purpureum)
- Cnt (10 kDa, Protein from Porphyridium purpureum)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Porphyridium purpureum)
- Psii_pbs31 domain-containing protein (22 kDa, Protein from Porphyridium purpureum)
- R-phycoerythrin gamma chain, chloroplastic (36 kDa, Protein from Porphyridium purpureum)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Phycobilisome 31.8 kda linker polypeptide, phycoerythrin-associated, rod (32 kDa, Protein from Porphyridium purpureum)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- Ps ii complex 12 kda extrinsic protein (16 kDa, Protein from Porphyridium purpureum)
- Photosystem ii cp43 reaction center protein (52 kDa, Protein from Porphyridium purpureum)
- B-phycoerythrin beta chain (18 kDa, Protein from Porphyridium purpureum)
- Phycoerythrobilin (588 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod (53 kDa, Protein from Porphyridium purpureum)
- In situ single-pbs-psii-psi-lhcs megacomplex (Cell from Porphyridium purpureum)
- Beta-d-glucopyranose (180 Da, Ligand)
- Photosystem i subunit o (9 kDa, Protein from Porphyridium purpureum)
- Fucoxanthin-chlorophyll a-c binding protein, chloroplastic (18 kDa, Protein from Porphyridium purpureum)
- Lpp2 (17 kDa, Protein from Porphyridium purpureum)
- Cytochrome c6 (11 kDa, Protein from Porphyridium purpureum)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Porphyridium purpureum)
- Cytochrome c550 (17 kDa, Protein from Porphyridium purpureum)
- Glycerol (92 Da, Ligand)
- Allophycocyanin beta subunit (17 kDa, Protein from Porphyridium purpureum)
- Photosystem i iron-sulfur center (8 kDa, Protein from Porphyridium purpureum)
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Porphyridium purpureum)
- R-phycoerythrin gamma chain, chloroplastic (31 kDa, Protein from Porphyridium purpureum)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psb34 (2 kDa, Protein from Porphyridium purpureum)
- Photosystem ii protein y (3 kDa, Protein from Porphyridium purpureum)
- Lrc4 (16 kDa, Protein from Porphyridium purpureum)
- Psbm (10 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a-b binding protein, chloroplastic (18 kDa, Protein from Porphyridium purpureum)
- Oxygen-evolving enhancer protein (30 kDa, Protein from Porphyridium purpureum)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Porphyridium purpureum)
- Ferredoxin (10 kDa, Protein from Porphyridium purpureum)
- R-phycoerythrin gamma chain, chloroplastic (31 kDa, Protein from Porphyridium purpureum)
- Lrh (20 kDa, Protein from Porphyridium purpureum)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Chlorophyll a-b binding protein 1b-21, chloroplastic (18 kDa, Protein from Porphyridium purpureum)
- Pheophytin a (871 Da, Ligand)
- Cytochrome b559 subunit beta (5 kDa, Protein from Porphyridium purpureum)
- Redcap (19 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a (893 Da, Ligand)
- (2s)-2,3-dihydroxypropyl octadecanoate (358 Da, Ligand)
- Fas1 domain-containing protein (26 kDa, Protein from Porphyridium purpureum)
- R-phycoerythrin gamma chain, chloroplastic (29 kDa, Protein from Porphyridium purpureum)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Allophycocyanin alpha subunit (17 kDa, Protein from Porphyridium purpureum)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem ii reaction center x protein (4 kDa, Protein from Porphyridium purpureum)
- Psbw (3 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a-b binding protein, chloroplastic (19 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit xi (14 kDa, Protein from Porphyridium purpureum)
- Phycourobilin (590 Da, Ligand)
- Phycobilisome 31.8 kda linker polypeptide, phycoerythrin-associated, rod (39 kDa, Protein from Porphyridium purpureum)
- Lpp1 (10 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a-b binding protein 1b-21, chloroplastic (19 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 31.8 kda linker polypeptide, phycoerythrin-associated, rod (46 kDa, Protein from Porphyridium purpureum)
- Photosystem ii d2 protein (39 kDa, Protein from Porphyridium purpureum)
- Phycobilisome 31.8 kda linker polypeptide, phycoerythrin-associated, rod (55 kDa, Protein from Porphyridium purpureum)
- Psaa (83 kDa, Protein from Porphyridium purpureum)
- Fas1 domain-containing protein (31 kDa, Protein from Porphyridium purpureum)
- Phycobiliprotein apce (99 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Porphyridium purpureum)
- Psar (8 kDa, Protein from Porphyridium purpureum)
- C-phycocyanin alpha subunit (17 kDa, Protein from Porphyridium purpureum)
- Chlorophyll a-b binding protein of lhcii type iii, chloroplastic (18 kDa, Protein from Porphyridium purpureum)
- Water (18 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Allophycocyanin beta 18 subunit (19 kDa, Protein from Porphyridium purpureum)
- Allophycocyanin gamma subunit (18 kDa, Protein from Porphyridium purpureum)
- Photosystem i reaction center subunit psak (6 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein h (7 kDa, Protein from Porphyridium purpureum)
- Fe (iii) ion (55 Da, Ligand)
- Lrc5 (30 kDa, Protein from Porphyridium purpureum)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i reaction center subunit viii (4 kDa, Protein from Porphyridium purpureum)
- Photosystem ii reaction center protein z (6 kDa, Protein from Porphyridium purpureum)
- Beta-carotene (536 Da, Ligand)
- Phycoerythrin alpha subunit (17 kDa, Protein from Porphyridium purpureum)