Bottom cylinder of high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 2.0 Å
EM Method: Single-particle
Fitted PDBs: 8to2
Q-score: 0.592
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803)
- Translation initiation factor if-2 (12 kDa, Protein from Synechocystis sp. PCC 6803)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Phycocyanobilin (588 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 bound to ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
Central rod disk in C1 symmetry of high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 1.87 Å
EM Method: Single-particle
Fitted PDBs: 8to5
Q-score: 0.833
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycocyanobilin (588 Da, Ligand)
- Water (18 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 bound to ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. PCC 6803)
Top cylinder bound to OCP from high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 8tpj
Q-score: 0.675
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome bound to ocp (Complex from Synechocystis sp. PCC 6803)
- Phycocyanobilin (588 Da, Ligand)
- Water (18 Da, Ligand)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803)
Rod from high-resolution phycobilisome quenched by OCP (local refinement)
Resolution: 1.9 Å
EM Method: Single-particle
Fitted PDBs: 8tro
Q-score: 0.791
Sauer PV, Cupellini L, Sutter M, Bondanza M, Dominguez Martin MA, Kirst H, Bina D, Koh AF, Kotecha A, Greber BJ, Nogales E, Polivka T, Mennucci B, Kerfeld CA
Sci Adv (2024) 10 pp. eadk7535-eadk7535 [ Pubmed: 38578996 DOI: doi:10.1126/sciadv.adk7535 ]
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome 8.9 kda linker polypeptide, phycocyanin-associated, rod (9 kDa, Protein from Synechocystis sp. PCC 6803)
- Phycobilisome bound to ocp (Complex from Synechocystis sp. PCC 6803)
- Phycocyanobilin (588 Da, Ligand)
- Water (18 Da, Ligand)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803)
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. PCC 6803)
Synechocystis PCC 6803 Phycobilisome core from up-down rod conformation
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7sc7
Q-score: 0.454
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome from synechocystis pcc 6803 (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
Synechocystis PCC 6803 Phycobilisome rod from PBS sample
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 7sc8
Q-score: 0.598
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Phycobilisome 8.9 kda linker polypeptide, phycocyanin-associated, rod (9 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome from synechocystis pcc 6803 (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Water (18 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
Synechocystis PCC 6803 Phycobilisome core, complex with OCP
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7sc9
Q-score: 0.449
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
Synechocystis PCC 6803 Phycobilisome rod from OCP-PBS complex sample
Resolution: 2.1 Å
EM Method: Single-particle
Fitted PDBs: 7sca
Q-score: 0.712
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Phycobilisome 8.9 kda linker polypeptide, phycocyanin-associated, rod (9 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 2 (30 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycocyanobilin (588 Da, Ligand)
- C-phycocyanin beta subunit (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- C-phycocyanin alpha subunit (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Water (18 Da, Ligand)
- Phycobilisome 32.1 kda linker polypeptide, phycocyanin-associated, rod 1 (32 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
B-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7scb
Q-score: 0.497
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin subunit alpha-b (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Allophycocyanin subunit beta-18 (18 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)
- Sll1873 protein (12 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
T-cylinder of Synechocystis PCC 6803 Phycobilisome, complex with OCP - local refinement
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 7scc
Q-score: 0.458
Dominguez-Martin MA, Sauer PV, Kirst H, Sutter M, Bina D, Greber BJ, Nogales E, Polivka T, Kerfeld CA
Nature (2022) 609 pp. 835-845 [ Pubmed: 36045294 DOI: doi:10.1038/s41586-022-05156-4 ]
- Allophycocyanin alpha chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Orange carotenoid-binding protein (34 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Beta,beta-carotene-4,4'-dione (564 Da, Ligand)
- Complex of phycobilisome from synechocystis pcc 6803 with ocp (Complex from Synechocystis sp. (strain PCC 6803 / Kazusa))
- Phycobiliprotein apce (100 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Allophycocyanin beta chain (17 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome 7.8 kda linker polypeptide, allophycocyanin-associated, core (7 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycobilisome rod-core linker polypeptide cpcg (28 kDa, Protein from Synechocystis sp. PCC 6803 substr. Kazusa)
- Phycocyanobilin (588 Da, Ligand)