PSI-LHCI Supercomplex from Physcometrella patens
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 6l35
Q-score: 0.545
Yan Q, Zhao L, Wang W, Pi X, Han G, Wang J, Cheng L, He YK, Kuang T, Qin X, Sui SF, Shen JR
Cell Discov (2021) 7 pp. 10-10 [ Pubmed: 33589616 DOI: doi:10.1038/s41421-021-00242-9 ]
- Psae (6 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (23 kDa, Protein from Moss)
- Iron/sulfur cluster (351 Da, Ligand)
- Phylloquinone (450 Da, Ligand)
- Predicted protein psad (15 kDa, Protein from Moss)
- Photosystem i iron-sulfur center (8 kDa, Protein from Moss)
- Psak (7 kDa, Protein from Moss)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Moss)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Moss)
- Beta-carotene (536 Da, Ligand)
- Psi-lhci (Complex from Physcomitrella patens)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Moss)
- Predicted protein psag (10 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (22 kDa, Protein from Moss)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Moss)
- Psi-f (17 kDa, Protein from Moss)
- Chlorophyll a-b binding protein, chloroplastic (20 kDa, Protein from Moss)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- Psah photosystem i reaction center subunit (9 kDa, Protein from Moss)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (3r,3'r,6s)-4,5-didehydro-5,6-dihydro-beta,beta-carotene-3,3'-diol (568 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Moss)
- Psi subunit v (16 kDa, Protein from Moss)
- Chlorophyll a (893 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Organization and energy transfer in a huge diatom PSI-FCPI supercomplex
Resolution: 2.38 Å
EM Method: Single-particle
Fitted PDBs: 6ly5
Q-score: 0.517
Xu C, Pi X, Huang Y, Han G, Chen X, Qin X, Huang G, Zhao S, Yang Y, Kuang T, Wang W, Sui SF, Shen JR
Nat Commun (2020) 11 pp. 5081-5081 [ Pubmed: 33033236 DOI: doi:10.1038/s41467-020-18867-x ]
- Fcpi-1 (24 kDa, Protein from Chaetoceros gracilis)
- Iron/sulfur cluster (351 Da, Ligand)
- Psae (7 kDa, Protein from Chaetoceros gracilis)
- Psam (3 kDa, Protein from Chaetoceros gracilis)
- Phylloquinone (450 Da, Ligand)
- Fcpi-8 (23 kDa, Protein from Chaetoceros gracilis)
- Psab (82 kDa, Protein from Chaetoceros gracilis)
- Fcpi-14 (24 kDa, Protein from Chaetoceros gracilis)
- A huge diatom psi-fcpi supercomplex (Complex from Chaetoceros gracilis)
- Fcpi-3 (21 kDa, Protein from Chaetoceros gracilis)
- Beta-carotene (536 Da, Ligand)
- Fcpi-17 (21 kDa, Protein from Chaetoceros gracilis)
- Chlorophyll c1 (610 Da, Ligand)
- Fcpi-11 (21 kDa, Protein from Chaetoceros gracilis)
- Psal (19 kDa, Protein from Chaetoceros gracilis)
- Psar (14 kDa, Protein from Chaetoceros gracilis)
- Fcpi-9 (21 kDa, Protein from Chaetoceros gracilis)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psaa (82 kDa, Protein from Chaetoceros gracilis)
- Fcpi-21 (24 kDa, Protein from Chaetoceros gracilis)
- Psac (8 kDa, Protein from Chaetoceros gracilis)
- Water (18 Da, Ligand)
- Fcpi-7 (18 kDa, Protein from Chaetoceros gracilis)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Fcpi-16 (32 kDa, Protein from Chaetoceros gracilis)
- Chlorophyll a (893 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psai (4 kDa, Protein from Chaetoceros gracilis)
- Fcpi-12 (22 kDa, Protein from Chaetoceros gracilis)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Fcpi-24 (26 kDa, Protein from Chaetoceros gracilis)
- Psas (11 kDa, Protein from Chaetoceros gracilis)
- Fcpi-23 (27 kDa, Protein from Chaetoceros gracilis)
- Fcpi-5 (23 kDa, Protein from Chaetoceros gracilis)
- Fcpi-4 (26 kDa, Protein from Chaetoceros gracilis)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Psaj (4 kDa, Protein from Chaetoceros gracilis)
- Fcpi-6 (22 kDa, Protein from Chaetoceros gracilis)
- Fcpi-10 (21 kDa, Protein from Chaetoceros gracilis)
- Fcpi-2 (17 kDa, Protein from Chaetoceros gracilis)
- Fcpi-19 (19 kDa, Protein from Chaetoceros gracilis)
- Fcpi-13 (22 kDa, Protein from Chaetoceros gracilis)
- Psad (14 kDa, Protein from Chaetoceros gracilis)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Fcpi (21 kDa, Protein from Chaetoceros gracilis)
- Psaf (17 kDa, Protein from Chaetoceros gracilis)
Resolution: 3.49 Å
EM Method: Single-particle
Fitted PDBs: 6igz
Q-score: 0.475
Qin X, Pi X, Wang W, Han G, Zhu L, Liu M, Cheng L, Shen JR, Kuang T, Sui SF
Nat Plants (2019) 5 pp. 263-272 [ DOI: doi:10.1038/s41477-019-0379-y Pubmed: 30850820 ]
- Psad (21 kDa, Protein from Bryopsis corticulans)
- Lhca-g (29 kDa, Protein from Bryopsis corticulans)
- Iron/sulfur cluster (351 Da, Ligand)
- Psag (18 kDa, Protein from Bryopsis corticulans)
- Phylloquinone (450 Da, Ligand)
- Lhca-h (28 kDa, Protein from Bryopsis corticulans)
- Psak (12 kDa, Protein from Bryopsis corticulans)
- Lhca-j (26 kDa, Protein from Bryopsis corticulans)
- Lhca-i (24 kDa, Protein from Bryopsis corticulans)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Bryopsis corticulans)
- Psae (10 kDa, Protein from Bryopsis corticulans)
- Psaj (4 kDa, Protein from Bryopsis corticulans)
- Psi-lhci (Complex from Bryopsis corticulans)
- Psaa (83 kDa, Protein from Bryopsis corticulans)
- Chlorophyll b (907 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Lhca-b (26 kDa, Protein from Bryopsis corticulans)
- Psah (14 kDa, Protein from Bryopsis corticulans)
- (3s,5r,6s,3's,5'r,6's)-5,6,5',6'-diepoxy-5,6,5',6'- tetrahydro-beta,beta-carotene-3,3'-diol (600 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psab (82 kDa, Protein from Bryopsis corticulans)
- Psaf (25 kDa, Protein from Bryopsis corticulans)
- Lhca-c (27 kDa, Protein from Bryopsis corticulans)
- Psac (8 kDa, Protein from Bryopsis corticulans)
- Psai (3 kDa, Protein from Bryopsis corticulans)
- Lhca-a (24 kDa, Protein from Bryopsis corticulans)
- Psal (21 kDa, Protein from Bryopsis corticulans)
- Chlorophyll a (893 Da, Ligand)
- Heptyl 1-thiohexopyranoside (294 Da, Ligand)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Lhca-d (30 kDa, Protein from Bryopsis corticulans)
Cryo-EM structure of the red algal PSI-LHCR
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 5zgb
Q-score: 0.399
Pi X, Tian L, Dai HE, Qin X, Cheng L, Kuang T, Sui SF, Shen JR
PNAS (2018) 115 pp. 4423-4428 [ Pubmed: 29632169 DOI: doi:10.1073/pnas.1722482115 ]
- Psae (10 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Phylloquinone (450 Da, Ligand)
- (2s)-2,3-dihydroxypropyl octadecanoate (358 Da, Ligand)
- Psad (15 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psai (3 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psaj (4 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Lhcr1 (19 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Beta-carotene (536 Da, Ligand)
- Psao (16 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- Psac (8 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psi-5lhcr (Complex from Cyanidioschyzon merolae)
- Psab (82 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Lhcr2 (21 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Chlorophyll a isomer (893 Da, Ligand)
- Psam (3 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Beta-d-glucopyranose (180 Da, Ligand)
- 1-dodecanol (186 Da, Ligand)
- Psal (15 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Psak (6 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psaf (21 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Psaa (82 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Lhcr3 (20 kDa, Protein from Cyanidioschyzon merolae strain 10D)