PSI-FCPI of the diatom Thalassiosira pseudonana CCMP1335
Resolution: 2.3 Å
EM Method: Single-particle
Fitted PDBs: 8xls
Q-score: 0.7
Kato K, Nakajima Y, Xing J, Kumazawa M, Ogawa H, Shen JR, Ifuku K, Nagao R
eLife (2024) 13 [ DOI: doi:10.7554/eLife.99858 Pubmed: 39480899 ]
- Phylloquinone (450 Da, Ligand)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Unknown ligand (Ligand)
- Psi-fcpi (550 kDa, Complex from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chlorophyll a/c-binding protein lhcq8 (21 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- Pt17531-like protein (21 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Fucoxanthin chl a/c light-harvesting protein, major type (21 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fucoxanthin chlorophyll a/c-binding protein redcap (23 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Water (18 Da, Ligand)
- Fucoxanthin chl a/c light-harvesting protein (21 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i iron-sulfur center (8 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Zeaxanthin (568 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Photosystem i reaction center subunit psa29 (20 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Unknown protein (7 kDa, Protein from Thalassiosira pseudonana CCMP1335)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
PSI-AcpPCI supercomplex from Amphidinium carterae
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8jw0
Q-score: 0.51
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ DOI: doi:10.1073/pnas.2315476121 Pubmed: 38319970 ]
- Psi-acppci supercomplex from amphidinium carterae (Complex from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-17, acppci-17 (17 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Amphidinium carterae)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (18 kDa, Protein from Amphidinium carterae)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (19 kDa, Protein from Amphidinium carterae)
- Beta-carotene (536 Da, Ligand)
- Chlorophyll c1 (610 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-1, acppci-1 (15 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-14, acppci-14 (17 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Amphidinium carterae)
- Photosystem i psaj (7 kDa, Protein from Amphidinium carterae)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (18 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (19 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psai (14 kDa, Protein from Amphidinium carterae)
- Peridinin (630 Da, Ligand)
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i psab (67 kDa, Protein from Amphidinium carterae)
- Photosystem i psac (9 kDa, Protein from Amphidinium carterae)
- Photosystem i psae (8 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-15, acppci-15 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psal (27 kDa, Protein from Amphidinium carterae)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i psaa (70 kDa, Protein from Amphidinium carterae)
- Photosystem i psad (28 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-16, acppci-16 (17 kDa, Protein from Amphidinium carterae)
- Photosystem i psar (14 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (23 kDa, Protein from Amphidinium carterae)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i psam (9 kDa, Protein from Amphidinium carterae)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Amphidinium carterae)
- Photosystem i psaf (20 kDa, Protein from Amphidinium carterae)
PSI-AcpPCI supercomplex from Symbiodinium
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 8jze
Q-score: 0.518
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ DOI: doi:10.1073/pnas.2315476121 Pubmed: 38319970 ]
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (22 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Symbiodinium)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Symbiodinium)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-15, acppci-15 (17 kDa, Protein from Symbiodinium)
- Beta-carotene (536 Da, Ligand)
- Photosystem i psad (24 kDa, Protein from Symbiodinium)
- Chlorophyll c1 (610 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Symbiodinium)
- Photosystem i psac (9 kDa, Protein from Symbiodinium)
- Photosystem i psae (8 kDa, Protein from Symbiodinium)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i psab (74 kDa, Protein from Symbiodinium)
- Photosystem i psaj (11 kDa, Protein from Symbiodinium)
- Peridinin (630 Da, Ligand)
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Photosystem i psai (13 kDa, Protein from Symbiodinium)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (19 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (24 kDa, Protein from Symbiodinium)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i unk (6 kDa, Protein from Symbiodinium)
- Photosystem i psar (15 kDa, Protein from Symbiodinium)
- Photosystem i psaa (75 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-14, acppci-14 (17 kDa, Protein from Symbiodinium)
- Photosystem i psal (27 kDa, Protein from Symbiodinium)
- Psi-acppci supercomplex from symbiodinium (Complex from Symbiodinium)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i psaf (20 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (20 kDa, Protein from Symbiodinium)
- Photosystem i unk (11 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Symbiodinium)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Symbiodinium)
- Photosystem i psam (8 kDa, Protein from Symbiodinium)
PSI-AcpPCI supercomplex from Symbiodinium
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8jzf
Q-score: 0.537
Li X, Li Z, Wang F, Zhao S, Xu C, Mao Z, Duan J, Feng Y, Yang Y, Shen L, Wang G, Yang Y, Yu LJ, Sang M, Han G, Wang X, Kuang T, Shen JR, Wang W
PNAS (2024) 121 pp. e2315476121-e2315476121 [ DOI: doi:10.1073/pnas.2315476121 Pubmed: 38319970 ]
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-3, acppci-3 (22 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-6, acppci-6 (19 kDa, Protein from Symbiodinium)
- Phylloquinone (450 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-5, acppci-5 (20 kDa, Protein from Symbiodinium)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-11, acppci-11 (21 kDa, Protein from Symbiodinium)
- Beta-carotene (536 Da, Ligand)
- Photosystem i psad (24 kDa, Protein from Symbiodinium)
- Chlorophyll c1 (610 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-2, acppci-2 (19 kDa, Protein from Symbiodinium)
- Photosystem i psac (9 kDa, Protein from Symbiodinium)
- Photosystem i psae (8 kDa, Protein from Symbiodinium)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i psab (74 kDa, Protein from Symbiodinium)
- Photosystem i psaj (11 kDa, Protein from Symbiodinium)
- Peridinin (630 Da, Ligand)
- [(1~{s},5~{r})-3,3,5-trimethyl-5-oxidanyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{s},4~{s},6~{r})-2,2,6-trimethyl-4-oxidanyl-7-oxabicyclo[4.1.0]heptan-1-yl]octadeca-1,3,5,7,9,11,13,15,17-nonaenylidene]cyclohexyl] ethanoate (642 Da, Ligand)
- Photosystem i psai (13 kDa, Protein from Symbiodinium)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-12, acppci-12 (17 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-4, acppci-4 (19 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-8, acppci-8 (24 kDa, Protein from Symbiodinium)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem i unk (6 kDa, Protein from Symbiodinium)
- Photosystem i psar (15 kDa, Protein from Symbiodinium)
- Photosystem i psaa (75 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-7, acppci-7 (21 kDa, Protein from Symbiodinium)
- Photosystem i psal (27 kDa, Protein from Symbiodinium)
- Psi-acppci supercomplex from symbiodinium (Complex from Symbiodinium)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i psaf (20 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-10, acppci-10 (20 kDa, Protein from Symbiodinium)
- Photosystem i unk (11 kDa, Protein from Symbiodinium)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-9, acppci-9 (17 kDa, Protein from Symbiodinium)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll a-chlorophyll c-peridinin-protein-complex i-13, acppci-13 (17 kDa, Protein from Symbiodinium)
- Photosystem i psam (8 kDa, Protein from Symbiodinium)
PSI-LHCI of the red alga Cyanidium caldarium RK-1 (NIES-2137)
Resolution: 1.92 Å
EM Method: Single-particle
Fitted PDBs: 8wey
Q-score: 0.662
Kato K, Hamaguchi T, Kumazawa M, Nakajima Y, Ifuku K, Hirooka S, Hirose Y, Miyagishima SY, Suzuki T, Kawakami K, Dohmae N, Yonekura K, Shen JR, Nagao R
PNAS (2024) 121 pp. e2319658121-e2319658121 [ Pubmed: 38442179 DOI: doi:10.1073/pnas.2319658121 ]
- Phylloquinone (450 Da, Ligand)
- Unknown ligand (Ligand)
- Beta-carotene (536 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a1 (82 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit viii (3 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Cyanidium caldarium)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i subunit o (16 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Cyanidium caldarium)
- Water (18 Da, Ligand)
- Photosystem i reaction center subunit x (7 kDa, Protein from Cyanidium caldarium)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Cyanidium caldarium)
- Lhcr2 (24 kDa, Protein from Cyanidium caldarium)
- Lhcr3 (23 kDa, Protein from Cyanidium caldarium)
- Photosystem i iron-sulfur center (8 kDa, Protein from Cyanidium caldarium)
- Photosystem i reaction center subunit iv (6 kDa, Protein from Cyanidium caldarium)
- Zeaxanthin (568 Da, Ligand)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Cyanidium caldarium)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Cyanidium caldarium)
- Lhcr1 (24 kDa, Protein from Cyanidium caldarium)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Psi-lhci (550 kDa, Complex from Cyanidium caldarium)
Structure of the Anabaena PSI-monomer-IsiA supercomplex
Resolution: 2.62 Å
EM Method: Single-particle
Fitted PDBs: 7y3f
Q-score: 0.526
Nagao R, Kato K, Hamaguchi T, Ueno Y, Tsuboshita N, Shimizu S, Furutani M, Ehira S, Nakajima Y, Kawakami K, Suzuki T, Dohmae N, Akimoto S, Yonekura K, Shen JR
Nat Commun (2023) 14 pp. 920-920 [ DOI: doi:10.1038/s41467-023-36504-1 Pubmed: 36805598 ]
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit iv (7 kDa, Protein from Nostoc sp.)
- Psi-monomer-isia (640 kDa, Complex from Nostoc sp.)
- Beta-carotene (536 Da, Ligand)
- Psam (4 kDa, Protein from Nostoc sp.)
- Photosystem i p700 chlorophyll a apoprotein a2 1 (83 kDa, Protein from Nostoc sp.)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Nostoc sp.)
- Photosystem i 4.8 kda protein (4 kDa, Protein from Nostoc sp.)
- Water (18 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Nostoc sp.)
- Photosystem i reaction center subunit ii (15 kDa, Protein from Nostoc sp.)
- Photosystem i reaction center subunit iii (17 kDa, Protein from Nostoc sp.)
- Unknown (6 kDa, Protein from Nostoc sp.)
- Iron stress-induced chlorophyll-binding protein (37 kDa, Protein from Nostoc sp.)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit xi (51 kDa, Protein from Nostoc sp.)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Nostoc sp.)
- Isia (27 kDa, Protein from Nostoc sp.)
- Photosystem i reaction center subunit viii (5 kDa, Protein from Nostoc sp.)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
Structure of Wild-type PSI monomer1 from Cyanophora paradoxa
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7dr0
Q-score: 0.53
Kato K, Nagao R, Ueno Y, Yokono M, Suzuki T, Jiang TY, Dohmae N, Akita F, Akimoto S, Miyazaki N, Shen JR
bioRxiv (2022) [ DOI: doi:10.1101/2022.01.03.474851 ]
- Photosystem i reaction center subunit viii (3 kDa, Protein from Cyanophora paradoxa)
- Phylloquinone (450 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Cyanophora paradoxa)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ii, cyanelle (23 kDa, Protein from Cyanophora paradoxa)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Cyanophora paradoxa)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit psak 1 (15 kDa, Protein from Cyanophora paradoxa)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Cyanophora paradoxa)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Cyanophora paradoxa)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psi monomer1 (350 kDa, Complex from Cyanophora paradoxa)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Cyanophora paradoxa)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Cyanophora paradoxa)
- Photosystem i iron-sulfur center (8 kDa, Protein from Cyanophora paradoxa)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Cyanophora paradoxa)
Structure of Wild-type PSI monomer2 from Cyanophora paradoxa
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7dr1
Q-score: 0.525
Kato K, Nagao R, Ueno Y, Yokono M, Suzuki T, Jiang TY, Dohmae N, Akita F, Akimoto S, Miyazaki N, Shen JR
bioRxiv (2022) [ DOI: doi:10.1101/2022.01.03.474851 ]
- Photosystem i reaction center subunit viii (3 kDa, Protein from Cyanophora paradoxa)
- Phylloquinone (450 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Cyanophora paradoxa)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Cyanophora paradoxa)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Cyanophora paradoxa)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ii, cyanelle (23 kDa, Protein from Cyanophora paradoxa)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Cyanophora paradoxa)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Cyanophora paradoxa)
- Psi monomer2 (350 kDa, Complex from Cyanophora paradoxa)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Cyanophora paradoxa)
- Iron/sulfur cluster (351 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Cyanophora paradoxa)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Cyanophora paradoxa)
- Beta-carotene (536 Da, Ligand)
Structure of GraFix PSI tetramer from Cyanophora paradoxa
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 7dr2
Q-score: 0.374
Kato K, Nagao R, Ueno Y, Yokono M, Suzuki T, Jiang TY, Dohmae N, Akita F, Akimoto S, Miyazaki N, Shen JR
bioRxiv (2022) [ DOI: doi:10.1101/2022.01.03.474851 ]
- Photosystem i reaction center subunit viii (3 kDa, Protein from Cyanophora paradoxa)
- Phylloquinone (450 Da, Ligand)
- Photosystem i p700 chlorophyll a apoprotein a2 (82 kDa, Protein from Cyanophora paradoxa)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem i reaction center subunit ii, cyanelle (23 kDa, Protein from Cyanophora paradoxa)
- Photosystem i reaction center subunit xi (15 kDa, Protein from Cyanophora paradoxa)
- Beta-carotene (536 Da, Ligand)
- Photosystem i reaction center subunit psak 1 (15 kDa, Protein from Cyanophora paradoxa)
- Photosystem i reaction center subunit iii (20 kDa, Protein from Cyanophora paradoxa)
- Photosystem i p700 chlorophyll a apoprotein a1 (83 kDa, Protein from Cyanophora paradoxa)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Psi tetramer (1 MDa, Complex from Cyanophora paradoxa)
- Chlorophyll a isomer (893 Da, Ligand)
- Photosystem i reaction center subunit iv (8 kDa, Protein from Cyanophora paradoxa)
- Photosystem i reaction center subunit ix (4 kDa, Protein from Cyanophora paradoxa)
- Photosystem i iron-sulfur center (8 kDa, Protein from Cyanophora paradoxa)
- Iron/sulfur cluster (351 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Cyanophora paradoxa)
Photosystem I from a chlorophyll d-containing cyanobacterium Acaryochloris marina
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7dwq
Q-score: 0.469
Xu C, Zhu Q, Chen JH, Shen L, Yi X, Huang Z, Wang W, Chen M, Kuang T, Shen JR, Zhang X, Han G
J Integr Plant Biol (2021) 63 pp. 1740-1752 [ Pubmed: 34002536 DOI: doi:10.1111/jipb.13113 ]
- Phylloquinone (450 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Chlorophyll d (895 Da, Ligand)
- Chlorophyll d isomer (895 Da, Ligand)
- Photosystem i iron-sulfur center (8 kDa, Protein from Acaryochloris marinan MBIC11017)
- Photosystem i reaction center subunit iv (9 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i protein psal (15 kDa, Protein from Acaryochloris marina MBIC 11017)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem i p740 chlorophyll a apoprotein a1 (83 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i reaction center subunit xii (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Pheophytin a (871 Da, Ligand)
- Photosystem i protein psa27 (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i from a chlorophyll d-containing cyanobacterium acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
- Photosystem i protein psaf (17 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i protein psad (15 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem i reaction center subunit ix (5 kDa, Protein from Acaryochloris marina MBIC 11017)
- Iron/sulfur cluster (351 Da, Ligand)
- Photosystem i p740 chlorophyll a apoprotein a2 (82 kDa, Protein from Acaryochloris marina MBIC11017)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)