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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

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Structural biology

Heidelberg

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Hinxton

EMBL-EBI: European Bioinformatics Institute

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Epigenetics and neurobiology

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sample_name:"P_tRNA" AND current_status:"REL" AND xref_links:"interpro" AND author_name:"Aa"

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EMD-12534

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Structure of the yeast Gcn1 bound to a leading stalled 80S ribosome with Rbg2, Gir2, A- and P-tRNA and eIF5A

Release date: May 5, 2021
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7nrc
Q-score: 0.378

Pochopien AA, Beckert B, Kasvandik S, Berninghausen O, Beckmann R, Tenson T, Wilson DN

PNAS (2021) 118 [ Pubmed: 33790014 DOI: doi:10.1073/pnas.2022756118 ]

Sample:

5s rrna (121-mer) (38 kDa, RNA from Saccharomyces cerevisiae S288C)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l25 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s14-b (13 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s17-b (14 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l6-b (19 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l43-a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s10-a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l11-b (19 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l8-a (25 kDa, Protein from Saccharomyces cerevisiae S288C)
Structure of the yeast gcn1-bound leading stalled 80s ribosome with bound rbg2, gir2, a- and p-trna and eif5a (Complex from Saccharomyces cerevisiae S288C)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s29-a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
Trna (75-mer) (24 kDa, RNA from Saccharomyces cerevisiae S288C)
Eif5a (16 kDa, Protein from Saccharomyces cerevisiae S288C)
Gir2 (4 kDa, Protein from Saccharomyces cerevisiae S288C)
Trna (76-mer) (24 kDa, RNA from Saccharomyces cerevisiae S288C)
40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s23-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l14-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l13-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s12 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l42-a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s5 (22 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l34-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
Gcn1 (98 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
L1 60s ribosomal protein (17 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s1-a (26 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s15 (13 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s20 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l7-a (25 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s0-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l24-a (7 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l30 (10 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae S288C)
5.8s rrna (158-mer) (50 kDa, RNA from Saccharomyces cerevisiae S288C)
18s rrna (1771-mer) (579 kDa, RNA from Saccharomyces cerevisiae S288C)
25s rrna (3184-mer) (1 MDa, RNA from Saccharomyces cerevisiae S288C)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s18-a (16 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s3 (24 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s6-a (26 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s9-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s25-a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
Ribosome-interacting gtpase 2 (40 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s2 (23 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s13 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s11-a (16 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l40-a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
Rna (5'-r(p*ap*up*gp*ap*ap*a)-3') (1 kDa, RNA from Saccharomyces cerevisiae S288C)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s30-a (6 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s26-b (11 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l22-a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
40s ribosomal protein s31 (8 kDa, Protein from Saccharomyces cerevisiae S288C)

[Show more]

EMD-12535

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Structure of the yeast Gcn1 bound to a colliding stalled 80S ribosome with MBF1, A/P-tRNA and P/E-tRNA

Release date: April 14, 2021
Resolution: 4.36 Å
EM Method: Single-particle
Fitted PDBs: 7nrd
Q-score: 0.363

Pochopien AA, Beckert B, Kasvandik S, Berninghausen O, Beckmann R, Tenson T, Wilson DN

PNAS (2021) 118 [ Pubmed: 33790014 DOI: doi:10.1073/pnas.2022756118 ]

Sample:

60s ribosomal protein l24-a (7 kDa, Protein from Baker's yeast)
60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
Mrna (32-mer) (9 kDa, RNA from Saccharomyces cerevisiae S288c)
40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l22-a (11 kDa, Protein from Baker's yeast)
60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
Multiprotein-bridging factor 1 (13 kDa, Protein from Baker's yeast)
40s ribosomal protein s25-a (7 kDa, Protein from Baker's yeast)
60s ribosomal protein l14-a (14 kDa, Protein from Baker's yeast)
40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
40s ribosomal protein s14-b (13 kDa, Protein from Baker's yeast)
40s ribosomal protein s10-a (11 kDa, Protein from Baker's yeast)
40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
40s ribosomal protein s5 (22 kDa, Protein from Baker's yeast)
40s ribosomal protein s20 (11 kDa, Protein from Baker's yeast)
Ubiquitin-60s ribosomal protein l40 (6 kDa, Protein from Baker's yeast)
60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
Trna (75-mer) (24 kDa, RNA from Baker's yeast)
60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
40s ribosomal protein s17-b (14 kDa, Protein from Baker's yeast)
Ubiquitin-40s ribosomal protein s31 (8 kDa, Protein from Baker's yeast)
60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
40s ribosomal protein s9-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
Structure of the yeast gcn1-bound coilliding stalled 80s ribosome with mbf1, gir2, a/p-trna and p/e-trna (Complex from Saccharomyces cerevisiae S288c)
60s ribosomal protein l42-a (11 kDa, Protein from Baker's yeast)
60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
40s ribosomal protein s8-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l34-a (12 kDa, Protein from Baker's yeast)
60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
40s ribosomal protein s30-a (5 kDa, Protein from Baker's yeast)
60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
25s rrna (3184-mer) (1 MDa, RNA from Saccharomyces cerevisiae S288C)
40s ribosomal protein s1-a (24 kDa, Protein from Baker's yeast)
40s ribosomal protein s3 (24 kDa, Protein from Baker's yeast)
5.8s rrna (158-mer) (50 kDa, RNA from Saccharomyces cerevisiae S288c)
40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
60s ribosomal protein l30 (10 kDa, Protein from Baker's yeast)
60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
40s ribosomal protein s6-a (24 kDa, Protein from Baker's yeast)
40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
Trna (77-mer) (24 kDa, RNA from Saccharomyces cerevisiae S288c)
60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
40s ribosomal protein s26-b (11 kDa, Protein from Baker's yeast)
60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
40s ribosomal protein s0-a (22 kDa, Protein from Baker's yeast)
40s ribosomal protein s12 (13 kDa, Protein from Baker's yeast)
40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
60s ribosomal protein l25 (13 kDa, Protein from Baker's yeast)
5s rrna (121-mer) (38 kDa, RNA from Saccharomyces cerevisiae S288c)
60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
40s ribosomal protein s15 (13 kDa, Protein from Baker's yeast)
60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
60s ribosomal protein l7-a (25 kDa, Protein from Baker's yeast)
60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
Tpa_inf: saccharomyces cerevisiae s288c chromosome xii, complete sequence (579 kDa, RNA from Saccharomyces cerevisiae S288C)
60s ribosomal protein l6-b (18 kDa, Protein from Baker's yeast)
40s ribosomal protein s2 (23 kDa, Protein from Baker's yeast)
40s ribosomal protein s11-a (16 kDa, Protein from Baker's yeast)
40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
60s ribosomal protein l13-a (21 kDa, Protein from Baker's yeast)
60s ribosomal protein l3 (43 kDa, Protein from Baker's yeast)
40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)

[Show more]

EMD-21858

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Active 70S ribosome without free 5S rRNA and bound with A- and P- tRNA

Release date: June 24, 2020
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6wnw
Q-score: 0.43

Huang S, Aleksashin NA, Loveland AB, Klepacki D, Reier K, Kefi A, Szal T, Remme J, Jaeger L, Vazquez-Laslop N, Korostelev AA, Mankin AS

Nat Commun (2020) 11 pp. 2900-2900 [ DOI: doi:10.1038/s41467-020-16694-8 Pubmed: 32518240 ]

Sample:

50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
16s ribosomal rna (498 kDa, RNA from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
Mrna (3 kDa, RNA from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
23s-5s joint ribosomal rna (982 kDa, RNA from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l1 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
Active 70s ribosome without free 5s rrna and bound with a- and p- trna (2 MDa, Complex from Escherichia coli)
50s ribosomal protein l10 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli)
Trnafmet (24 kDa, RNA from Escherichia coli)
Trnaphe (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)

[Show more]

Sort by: Download

Showing 1 - 3 of 3. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [3]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

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