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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"P_tRNA" AND xref_links:"pdb" AND author_name:"P" AND author_name:"M"

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EMD-0270

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Stringent response control by a bifunctional RelA enzyme in the presence and absence of the ribosome

Release date: Oct. 23, 2019
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6htq
Q-score: 0.355

Pausch P, Abdelshahid M, Steinchen W, Schafer H, Gratani FL, Freibert SA, Wolz C, Turgay K, Wilson DN, Bange G

Cell Rep (2020) 32 pp. 108157-108157 [ Pubmed: 32937119 DOI: doi:10.1016/j.celrep.2020.108157 ]

Sample:

50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (29 kDa, Protein from Bacillus subtilis (strain 168))
16s rrna (496 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
30s ribosomal protein s16 (9 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (12 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (15 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (8 kDa, Protein from Bacillus subtilis (strain 168))
Gtp pyrophosphokinase (39 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
Bacillus subtilis subsp. subtilis str. 168 (Complex from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (8 kDa, Protein from Bacillus subtilis (strain 168))
A/r-trna (24 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
E-trna (24 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (16 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s3 (23 kDa, Protein from Bacillus subtilis (strain 168))
5s ribosomal rna (36 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
P-trna (28 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
23s ribosomal rna (948 kDa, RNA from Bacillus subtilis subsp. subtilis str. 168)
30s ribosomal protein s9 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (25 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (14 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l5 (19 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s17 (9 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))

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EMD-0176

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Cryo-EM structure of a 70S Bacillus subtilis ribosome translating the ErmD leader peptide in complex with telithromycin

Release date: Aug. 29, 2018
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ha1
Q-score: 0.48

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ DOI: doi:10.1073/pnas.1808535115 Pubmed: 30126986 ]

Sample:

50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
16s ribosomal rna (503 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
23s ribosomal rna (949 kDa, RNA from Bacillus subtilis (strain 168))
70s ribosome (Complex from Bacillus subtilis (strain 168))
Ermd stalling peptide (Complex from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
P-trna (28 kDa, RNA from Escherichia coli)
5s ribosomal rna (36 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
70s ribosome with p-trna translating the ermd stalling peptide and complexed with telithromycin (Complex)
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
Mrna (872 Da, RNA from Bacillus subtilis (strain 168))
Telithromycin (812 Da, Ligand)
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
Trna (Complex from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))

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EMD-0177

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Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome

Release date: Aug. 29, 2018
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ha8
Q-score: 0.389

Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN

PNAS (2018) 115 pp. 8978-8983 [ DOI: doi:10.1073/pnas.1808535115 Pubmed: 30126986 ]

Sample:

50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
23s rrna (949 kDa, RNA from Bacillus subtilis (strain 168))
50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l1 (25 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
P-trna(leu) (24 kDa, RNA from Escherichia coli)
Mrna (872 Da, RNA from Bacillus subtilis subsp. subtilis str. 168)
50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
Complex of translating 70s ribosome with abcf antibiotic resistance protein vmlr (Complex)
16s rrna (503 kDa, RNA from Bacillus subtilis (strain 168))
Ribosome (Complex from Bacillus subtilis subsp. subtilis str. 168)
30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
Nucleotide-binding protein expz (60 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
Adenosine-5'-triphosphate (507 Da, Ligand)
50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
5s rrna (36 kDa, RNA from Bacillus subtilis (strain 168))
30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
Telithromycin (812 Da, Ligand)
50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
Trna (Complex from Escherichia coli)
50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
Nucleotide-binding protein expz (Complex from Bacillus subtilis subsp. subtilis str. 168)

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EMD-1524

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Complex of elongating Escherichia coli 70S ribosome and EF4(LepA)-GMPPNP

Release date: April 1, 2009
Resolution: 10.9 Å
EM Method: Single-particle
Fitted PDBs: 3deg
Q-score: 0.079

Connell SR, Topf M, Qin Y, Wilson DN, Mielke T, Fucini P, Nierhaus KH, Spahn CM

Nat Struct Mol Biol (2008) 15 pp. 910-915 [ Pubmed: 19172743 DOI: doi:10.1038/nsmb.1469 ]

Sample:

Complex of elongating escherichia coli 70s ribosome (2trnas) and ef4(lepa)-gmppnp (2 MDa, Sample)
Ef4(lepa) (Protein from Escherichia coli)
A-trna (RNA from Escherichia coli)
P-trna (RNA from Escherichia coli)
70s ribosome (Complex from Escherichia coli)

[Show more]

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