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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"P_tRNA" AND xref_links:"pdb" AND microscope_name:"FEI TITAN" AND author_name:"Li"

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EMD-40991

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Hypomethylated yeast 80S bound with cycloheximide, P-site tRNA, and A-site tRNA, messenger RNA, PRE

Release date: Dec. 11, 2024
Resolution: 2.2 Å
EM Method: Single-particle
Fitted PDBs: 8t2y
Q-score: 0.615

To Be Published

Sample:

40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
A site trna (24 kDa, RNA from Saccharomyces cerevisiae)
Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
P site trna (24 kDa, RNA from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
Hypomethylated ribosome bound with p-trna and a-trna (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
Messenger rna (3 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
5.8 s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20 (21 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
Rpl11a isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
Spermidine (145 Da, Ligand)

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EMD-38631

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Cryo-EM structure of the human 80S ribosome with Tigecycline, E-tRNA and P-tRNA

Release date: July 10, 2024
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8xsz

Li X, Wang M, Denk T, Buschauer R, Li Y, Beckmann R, Cheng J

Nat Commun (2024) 15 pp. 5481-5481 [ Pubmed: 38942792 DOI: doi:10.1038/s41467-024-49797-7 ]

Sample:

40s ribosomal protein s29 (6 kDa, Protein from Homo sapiens)
60s ribosomal protein l28 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l35a (12 kDa, Protein from Homo sapiens)
40s ribosomal protein s15 (17 kDa, Protein from Homo sapiens)
Mrna (3 kDa, RNA from Homo sapiens)
5.8s rrna (50 kDa, RNA from Homo sapiens)
40s ribosomal protein s30 (6 kDa, Protein from Homo sapiens)
60s ribosomal protein l41 (3 kDa, Protein from Homo sapiens)
40s ribosomal protein s24 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l13a (23 kDa, Protein from Homo sapiens)
60s ribosomal protein l8 (28 kDa, Protein from Homo sapiens)
60s ribosomal protein l36a (12 kDa, Protein from Homo sapiens)
5s rrna (38 kDa, RNA from Homo sapiens)
40s ribosomal protein s17 (15 kDa, Protein from Homo sapiens)
18s rrna (602 kDa, RNA from Homo sapiens)
Tigecycline (587 Da, Ligand)
Receptor of activated protein c kinase 1 (35 kDa, Protein from Homo sapiens)
28s rrna (1 MDa, RNA from Homo sapiens)
60s ribosomal protein l9 (21 kDa, Protein from Homo sapiens)
60s ribosomal protein l13 (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s25 (13 kDa, Protein from Homo sapiens)
40s ribosomal protein s27 (9 kDa, Protein from Homo sapiens)
60s ribosomal protein l37 (11 kDa, Protein from Homo sapiens)
60s ribosomal protein l34 (13 kDa, Protein from Homo sapiens)
40s ribosomal protein s7 (22 kDa, Protein from Homo sapiens)
Ubiquitin-40s ribosomal protein s27a (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s20 (13 kDa, Protein from Homo sapiens)
60s ribosomal protein l18a (20 kDa, Protein from Homo sapiens)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l12 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l21 (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s16 (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l37a (10 kDa, Protein from Homo sapiens)
60s ribosomal protein l38 (8 kDa, Protein from Homo sapiens)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Homo sapiens)
40s ribosomal protein s4, x isoform (29 kDa, Protein from Homo sapiens)
Zinc ion (65 Da, Ligand)
40s ribosomal protein s11 (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s6 (28 kDa, Protein from Homo sapiens)
60s ribosomal protein l23 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l32 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l19 (23 kDa, Protein from Homo sapiens)
60s ribosomal protein l29 (17 kDa, Protein from Homo sapiens)
40s ribosomal protein s8 (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s14 (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l11 (20 kDa, Protein from Homo sapiens)
40s ribosomal protein s3a (30 kDa, Protein from Homo sapiens)
60s ribosomal protein l27 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l22 (14 kDa, Protein from Homo sapiens)
40s ribosomal protein s26 (13 kDa, Protein from Homo sapiens)
60s ribosomal protein l35 (14 kDa, Protein from Homo sapiens)
40s ribosomal protein s5 (22 kDa, Protein from Homo sapiens)
40s ribosomal protein s15a (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l23a (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l3 (46 kDa, Protein from Homo sapiens)
40s ribosomal protein s10 (18 kDa, Protein from Homo sapiens)
40s ribosomal protein s21 (9 kDa, Protein from Homo sapiens)
60s ribosomal protein l7a (30 kDa, Protein from Homo sapiens)
60s ribosomal protein l4 (47 kDa, Protein from Homo sapiens)
Proliferation-associated protein 2g4 (43 kDa, Protein from Homo sapiens)
60s ribosomal protein l24 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l15 (24 kDa, Protein from Homo sapiens)
60s ribosomal protein l18 (21 kDa, Protein from Homo sapiens)
40s ribosomal protein sa (32 kDa, Protein from Homo sapiens)
60s ribosomal protein l5 (34 kDa, Protein from Homo sapiens)
Trna (24 kDa, RNA from Homo sapiens)
60s ribosomal protein l6 (32 kDa, Protein from Homo sapiens)
60s ribosomal protein l31 (14 kDa, Protein from Homo sapiens)
40s ribosomal protein s3 (26 kDa, Protein from Homo sapiens)
60s ribosomal protein l7 (29 kDa, Protein from Homo sapiens)
60s ribosomal protein l26 (17 kDa, Protein from Homo sapiens)
80s ribosome with tigecycline, e-trna and p-trna (Complex from Homo sapiens)
60s ribosomal protein l39 (6 kDa, Protein from Homo sapiens)
40s ribosomal protein s18 (17 kDa, Protein from Homo sapiens)
40s ribosomal protein s12 (14 kDa, Protein from Homo sapiens)
60s ribosomal protein l17 (21 kDa, Protein from Homo sapiens)
Large ribosomal subunit protein ul16 (24 kDa, Protein from Homo sapiens)
40s ribosomal protein s23 (15 kDa, Protein from Homo sapiens)
60s ribosomal protein l14 (23 kDa, Protein from Homo sapiens)
60s ribosomal protein l27a (16 kDa, Protein from Homo sapiens)
60s ribosomal protein l30 (12 kDa, Protein from Homo sapiens)
40s ribosomal protein s19 (16 kDa, Protein from Homo sapiens)
40s ribosomal protein s28 (7 kDa, Protein from Homo sapiens)
40s ribosomal protein s2 (31 kDa, Protein from Homo sapiens)
40s ribosomal protein s13 (17 kDa, Protein from Homo sapiens)
60s ribosomal protein l36 (12 kDa, Protein from Homo sapiens)
Large ribosomal subunit protein ul10 (34 kDa, Protein from Homo sapiens)
Serpine1 mrna-binding protein 1 (45 kDa, Protein from Homo sapiens)
40s ribosomal protein s9 (22 kDa, Protein from Homo sapiens)

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EMD-24944

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Damaged 70S ribosome with PrfH bound

Release date: Aug. 3, 2022
Resolution: 2.55 Å
EM Method: Single-particle
Fitted PDBs: 7sa4
Q-score: 0.61

Tian Y, Zeng F, Raybarman A, Fatma S, Carruthers A, Li Q, Huang RH

PNAS (2022) 119 pp. e2202464119-e2202464119 [ Pubmed: 35858322 DOI: doi:10.1073/pnas.2202464119 ]

Sample:

50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
Peptide chain release factor h (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
Trna (Cellular component)
Mrna (8 kDa, RNA from Escherichia coli)
Damaged 70s with prfh (Complex from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
16s ribosomal rna (497 kDa, RNA from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
Putative peptide chain release factor homolog (Cellular component)
30s (Complex)
30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s (Complex)
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
Water (18 Da, Ligand)
5s ribosomal rna (38 kDa, RNA from Escherichia coli)
P-trna, e-trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
23s ribosomal rna (941 kDa, RNA from Escherichia coli)
30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)

[Show more]

EMD-24652

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Structure of ribosomal complex bound with Rbg1/Tma46

Release date: Nov. 10, 2021
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 7rr5
Q-score: 0.437

Zeng F, Li X, Pires-Alves M, Chen X, Hawk CW, Jin H

Cell Rep (2021) 37 pp. 109877-109877 [ Pubmed: 34706231 DOI: doi:10.1016/j.celrep.2021.109877 ]

Sample:

60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s24 (15 kDa, Protein from Saccharomyces cerevisiae)
Aspartic acid (133 Da, Ligand)
Mrna (5 kDa, RNA from Saccharomyces cerevisiae)
Rps3 isoform 1 (26 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae)
Rpl5 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae)
A-trna (24 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae)
Rps29a isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s4 (29 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l27 (15 kDa, Protein from Saccharomyces cerevisiae)
P-trna (24 kDa, RNA from Saccharomyces cerevisiae)
A-trna (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s12 (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae)
Ribosomal complex with rbg1/tma46 (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s11-b (17 kDa, Protein from Saccharomyces cerevisiae)
Rps1a isoform 1 (28 kDa, Protein from Saccharomyces cerevisiae)
Rpl29 isoform 1 (6 kDa, Protein from Saccharomyces cerevisiae)
Rps15 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Saccharomyces cerevisiae)
5.8s rrna (50 kDa, RNA from Saccharomyces cerevisiae)
Rpl38 isoform 1 (8 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l41-a (3 kDa, Protein from Saccharomyces cerevisiae)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s10-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rbg1/tma46 (Complex from Saccharomyces cerevisiae)
Rpl11b isoform 1 (19 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s18-b (17 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s6 (27 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l6 (20 kDa, Protein from Saccharomyces cerevisiae)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl24a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l13 (22 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps8a isoform 1 (22 kDa, Protein from Saccharomyces cerevisiae)
Zinc ion (65 Da, Ligand)
Rps22a isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
Rps5p (25 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l1 (17 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae)
Rps20 isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
Rps25a isoform 1 (12 kDa, Protein from Saccharomyces cerevisiae)
Eukaryotic translation initiation factor 5a (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae)
Rps2 isoform 1 (27 kDa, Protein from Saccharomyces cerevisiae)
Rps28a isoform 1 (7 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s7 (21 kDa, Protein from Saccharomyces cerevisiae)
P-trna (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s subunit (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
25s rrna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae)
Mrna (Complex from Saccharomyces cerevisiae)
Rpp0 isoform 1 (33 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae)
40s subunit (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae)
5s rrna (38 kDa, RNA from Saccharomyces cerevisiae)
Rpl32 isoform 1 (14 kDa, Protein from Saccharomyces cerevisiae)
18s rrna (579 kDa, RNA from Saccharomyces cerevisiae)
Translation machinery-associated protein 46 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae)
Ribosome-interacting gtpase 1 (45 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
Eif5a (Complex from Saccharomyces cerevisiae)
40s ribosomal protein s23 (16 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s30 (7 kDa, Protein from Saccharomyces cerevisiae)
Rpl12a isoform 1 (17 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l23-b (14 kDa, Protein from Saccharomyces cerevisiae)
Ribosomal protein l37 (9 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l2-b (27 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s14-b (14 kDa, Protein from Saccharomyces cerevisiae)
Rpl3 isoform 1 (43 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s0 (28 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l18-b (20 kDa, Protein from Saccharomyces cerevisiae)
Rpl10 isoform 1 (25 kDa, Protein from Saccharomyces cerevisiae)
Rps26b isoform 1 (13 kDa, Protein from Saccharomyces cerevisiae)
40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
Rpl4a isoform 1 (39 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)

[Show more]

EMD-6315

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Activation of GTP Hydrolysis in mRNA-tRNA Translocation by Elongation Factor G

Release date: July 1, 2015
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 3j9z
Q-score: 0.194

Li W, Liu Z, Koripella RK, Langlois R, Sanyal S, Frank J

Sci Adv (2015) 1 pp. e1500169-e1500169 [ DOI: doi:10.1126/sciadv.1500169 Pubmed: 26229983 ]

Sample:

70s ribosome (2 MDa, Complex from Escherichia coli)
70s-p-trna-e-trna bound with ef-g h91a (2 MDa, Sample)
Elongation factor g (Protein from Escherichia coli)

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