Bacterial flagellar sodium-driven stator PomA5PomB2 with 100 mM NaCl
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8zyv
Q-score: 0.521
Nishikino T, Takekawa N, Kishikawa JI, Hirose M, Kojima S, Homma M, Kato T, Imada K
PNAS (2025) 122 pp. e2415713122-e2415713122 [ Pubmed: 39793043 DOI: doi:10.1073/pnas.2415713122 ]
- Chemotaxis protein poma (27 kDa, Protein from Vibrio alginolyticus)
- Water (18 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- Pomb (36 kDa, Protein from Vibrio alginolyticus)
- Bacterial flagellar sodium-driven stator poma5pomb2 with 100 mm nacl (210 kDa, Complex from Vibrio alginolyticus)
Bacterial flagellar sodium-driven stator PomA5PomB2 with 100 mM KCl
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 8zyw
Q-score: 0.437
Nishikino T, Takekawa N, Kishikawa JI, Hirose M, Kojima S, Homma M, Kato T, Imada K
PNAS (2025) 122 pp. e2415713122-e2415713122 [ Pubmed: 39793043 DOI: doi:10.1073/pnas.2415713122 ]
- Chemotaxis protein poma (27 kDa, Protein from Vibrio alginolyticus)
- Water (18 Da, Ligand)
- Bacterial flagellar sodium-driven stator poma5pomb2 with 100 mm kcl (210 kDa, Complex from Vibrio alginolyticus)
- Pomb (36 kDa, Protein from Vibrio alginolyticus)
Bacterial flagellar sodium-driven stator PomA5PomB2(D24N) with 100 mM NaCl
Resolution: 3.16 Å
EM Method: Single-particle
Fitted PDBs: 8zyz
Q-score: 0.509
Nishikino T, Takekawa N, Kishikawa JI, Hirose M, Kojima S, Homma M, Kato T, Imada K
PNAS (2025) 122 pp. e2415713122-e2415713122 [ Pubmed: 39793043 DOI: doi:10.1073/pnas.2415713122 ]
- Chemotaxis protein poma (27 kDa, Protein from Vibrio alginolyticus)
- Water (18 Da, Ligand)
- Pomb (36 kDa, Protein from Vibrio alginolyticus)
- Sodium ion (22 Da, Ligand)
- Bacterial flagellar sodium-driven stator poma5pomb2(d24n) with 100 mm nacl (210 kDa, Complex from Vibrio alginolyticus)
Bacterial flagellar sodium-driven stator PomA5PomB2(D24N) with 100 mM KCl
Resolution: 3.43 Å
EM Method: Single-particle
Fitted PDBs: 8zz0
Q-score: 0.457
Nishikino T, Takekawa N, Kishikawa JI, Hirose M, Kojima S, Homma M, Kato T, Imada K
PNAS (2025) 122 pp. e2415713122-e2415713122 [ Pubmed: 39793043 DOI: doi:10.1073/pnas.2415713122 ]
- Chemotaxis protein poma (27 kDa, Protein from Vibrio alginolyticus)
- Pomb (36 kDa, Protein from Vibrio alginolyticus)
- Water (18 Da, Ligand)
- Bacterial flagellar sodium-driven stator poma5pomb2(d24n) with 100 mm kcl (210 kDa, Complex from Vibrio alginolyticus)
Bacterial flagellar sodium-driven stator PomA5PomB2 with 100 mM NaCl and 0.1 mM phenamil
Resolution: 3.32 Å
EM Method: Single-particle
Fitted PDBs: 9ijm
Q-score: 0.452
Nishikino T, Takekawa N, Kishikawa JI, Hirose M, Kojima S, Homma M, Kato T, Imada K
PNAS (2025) 122 pp. e2415713122-e2415713122 [ Pubmed: 39793043 DOI: doi:10.1073/pnas.2415713122 ]
- Chemotaxis protein poma (27 kDa, Protein from Vibrio alginolyticus)
- Water (18 Da, Ligand)
- Bacterial flagellar sodium-driven stator poma5pomb2 with 100 mm nacl and 0.1 mm phenamil (210 kDa, Complex from Vibrio alginolyticus)
- Sodium ion (22 Da, Ligand)
- Phenamil (305 Da, Ligand)
- Pomb (36 kDa, Protein from Vibrio alginolyticus)
Resolution: 2.48 Å
EM Method: Single-particle
Fitted PDBs: 8brd
Q-score: 0.499
Hu H, Popp PF, Santiveri M, Roa-Eguiara A, Yan Y, Martin FJO, Liu Z, Wadhwa N, Wang Y, Erhardt M, Taylor NMI
Nat Commun (2023) 14 pp. 4411-4411 [ Pubmed: 37500658 DOI: doi:10.1038/s41467-023-39899-z ]
- Water (18 Da, Ligand)
- Flagellar motor protein,vapomb (5 kDa, Protein from Vibrio alginolyticus)
- Chemotaxis protein poma (26 kDa, Protein from Vibrio alginolyticus)
- Sodium ion (22 Da, Ligand)
- Flagellar sodium-driven stator unit (Complex from Vibrio alginolyticus)
- Chemotaxis protein poma (27 kDa, Protein from Vibrio alginolyticus)
Structure of V. alginolyticus PomAB
Santiveri M, Roa-Eguiara A, Kuhne C, Wadhwa N, Hu H, Berg HC, Erhardt M, Taylor NMI
Cell (2020) 183 pp. 244-257.e16 [ Pubmed: 32931735 DOI: doi:10.1016/j.cell.2020.08.016 ]
- Pomb (Protein from Vibrio alginolyticus)
- Stator unit pomab (Complex from Vibrio alginolyticus)
- Poma (Protein from Vibrio alginolyticus)
Vibrio mimicus PomA(5)B(2) complex
Deme JC, Johnson S, Vickery O, Aron A, Monkhouse H, Griffiths T, James RH, Berks BC, Coulton JW, Stansfeld PJ, Lea SM
Nat Microbiol (2020) 5 pp. 1553-1564 [ DOI: doi:10.1038/s41564-020-0788-8 Pubmed: 32929189 ]
- Poma (Protein from Vibrio mimicus)
- Poma(5)b(2) (Complex from Clostridium sporogenes)
- Pomb (Protein from Vibrio mimicus)