human EMC:human Cav1.2 channel complex in GDN detergent at 3.1 Angstrom
Nat Struct Mol Biol (2023) 30 pp. 735-739 [ DOI: doi:10.1038/s41594-023-00951-7 Pubmed: 36973510 ]
- Ternary complex of the human er membrane protein complex (emc) with human cav alpha1c and rabbit cav beta3 (Complex from Homo sapiens)
- Human cav alpha1c (187 kDa, Complex from Homo sapiens)
- Rabbit cav beta3 (100 kDa, Complex from Oryctolagus cuniculus)
- Er membrane protein complex subunit 1 (112 kDa, Complex from Homo sapiens)
Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7zx8
Q-score: 0.356
Rengachari S, Schilbach S, Kaliyappan T, Gouge J, Zumer K, Schwarz J, Urlaub H, Dienemann C, Vannini A, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 1159-1169 [ Pubmed: 36424526 DOI: doi:10.1038/s41594-022-00857-w ]
- Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- General transcription factor iif subunit 1 (58 kDa, Protein from Homo sapiens)
- Snapc (Complex from Homo sapiens)
- Transcription initiation factor iib (34 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit (217 kDa, Protein from Sus scrofa)
- Promoter (Complex from Sus scrofa)
- Non-template strand (29 kDa, DNA from Homo sapiens)
- Snrna-activating protein complex subunit 1 (43 kDa, Protein from Homo sapiens)
- Snrna-activating protein complex subunit 4 (159 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit j (13 kDa, Protein from Sus scrofa)
- Tata-box-binding protein and transcription factors (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 3 (46 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Snrna-activating protein complex subunit 5 (11 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- General transcription factor iif subunit 2 (28 kDa, Protein from Homo sapiens)
- Rna polymerase ii (Complex from Homo sapiens)
- Rna polymerase ii subunit d (16 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Transcription initiation factor iia subunit 2 (12 kDa, Protein from Homo sapiens)
- Template strand (29 kDa, DNA from Homo sapiens)
- Pre-initiation complex of rna polymerase ii with general transcription factors and snapc bound to u1 promoter (Complex)
- Zinc ion (65 Da, Ligand)
- Transcription initiation factor iia subunit 1 (41 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa)
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa)
- Tata-box-binding protein (37 kDa, Protein from Homo sapiens)
Structure of SNAPc:TBP-TFIIA-TFIIB sub-complex bound to U5 snRNA promoter
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7zwc
Q-score: 0.452
Rengachari S, Schilbach S, Kaliyappan T, Gouge J, Zumer K, Schwarz J, Urlaub H, Dienemann C, Vannini A, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 1159-1169 [ Pubmed: 36424526 DOI: doi:10.1038/s41594-022-00857-w ]
- Zinc ion (65 Da, Ligand)
- Transcription initiation factor iia subunit 1 (41 kDa, Protein from Homo sapiens)
- Promoter (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 4 (159 kDa, Protein from Homo sapiens)
- Tata-box-binding protein and transcription factors (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 3 (46 kDa, Protein from Homo sapiens)
- Snapc (Complex from Homo sapiens)
- General transcription factors and snapc bound to u5 promoter (Complex)
- Transcription initiation factor iib (34 kDa, Protein from Homo sapiens)
- Snrna-activating protein complex subunit 5 (11 kDa, Protein from Homo sapiens)
- Template strand (29 kDa, DNA from Homo sapiens)
- Tata-box-binding protein (37 kDa, Protein from Homo sapiens)
- Transcription initiation factor iia subunit 2 (12 kDa, Protein from Homo sapiens)
- Non-template strand (29 kDa, DNA from Homo sapiens)
- Snrna-activating protein complex subunit 1 (43 kDa, Protein from Homo sapiens)
Structure of SNAPc containing Pol II pre-initiation complex bound to U5 snRNA promoter (CC)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7zwd
Q-score: 0.342
Rengachari S, Schilbach S, Kaliyappan T, Gouge J, Zumer K, Schwarz J, Urlaub H, Dienemann C, Vannini A, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 1159-1169 [ Pubmed: 36424526 DOI: doi:10.1038/s41594-022-00857-w ]
- Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- General transcription factor iif subunit 1 (58 kDa, Protein from Homo sapiens)
- Snapc (Complex from Homo sapiens)
- Transcription initiation factor iib (34 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit (217 kDa, Protein from Sus scrofa)
- Promoter (Complex from Sus scrofa)
- Snrna-activating protein complex subunit 1 (43 kDa, Protein from Homo sapiens)
- Snrna-activating protein complex subunit 4 (159 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit j (13 kDa, Protein from Sus scrofa)
- Tata-box-binding protein and transcription factors (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 3 (46 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Snrna-activating protein complex subunit 5 (11 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- General transcription factor iif subunit 2 (28 kDa, Protein from Homo sapiens)
- Rna polymerase ii (Complex from Homo sapiens)
- Rna polymerase ii subunit d (16 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Pre-initiation complex of rna polymerase ii with general transcription factors and snapc bound to u5 promoter (Complex)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
- Template strand (29 kDa, DNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Transcription initiation factor iia subunit 2 (12 kDa, Protein from Homo sapiens)
- Non-template strand (29 kDa, DNA from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Transcription initiation factor iia subunit 1 (41 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa)
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa)
- Tata-box-binding protein (37 kDa, Protein from Homo sapiens)
Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (CC)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7zx7
Q-score: 0.267
Rengachari S, Schilbach S, Kaliyappan T, Gouge J, Zumer K, Schwarz J, Urlaub H, Dienemann C, Vannini A, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 1159-1169 [ Pubmed: 36424526 DOI: doi:10.1038/s41594-022-00857-w ]
- Dna-directed rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- General transcription factor iif subunit 1 (58 kDa, Protein from Homo sapiens)
- Snapc (Complex from Homo sapiens)
- Transcription initiation factor iib (34 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit (217 kDa, Protein from Sus scrofa)
- Non-template strand (29 kDa, DNA from Homo sapiens)
- Snrna-activating protein complex subunit 1 (43 kDa, Protein from Homo sapiens)
- Promoter (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 4 (159 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit j (13 kDa, Protein from Sus scrofa)
- Tata-box-binding protein and transcription factors (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 3 (46 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Sus scrofa)
- Snrna-activating protein complex subunit 5 (11 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- General transcription factor iif subunit 2 (28 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit d (16 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb3 (31 kDa, Protein from Sus scrofa)
- Magnesium ion (24 Da, Ligand)
- Transcription initiation factor iia subunit 2 (12 kDa, Protein from Homo sapiens)
- Template strand (29 kDa, DNA from Homo sapiens)
- Pre-initiation complex of rna polymerase ii with general transcription factors and snapc bound to u1 promoter (Complex)
- Rna polymerase ii (Complex from Sus scrofa)
- Zinc ion (65 Da, Ligand)
- Transcription initiation factor iia subunit 1 (41 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (7 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase subunit beta (134 kDa, Protein from Sus scrofa)
- Rna polymerase ii subunit k (7 kDa, Protein from Sus scrofa)
- Tata-box-binding protein (37 kDa, Protein from Homo sapiens)
Structure of SNAPc containing Pol II pre-initiation complex bound to U1 snRNA promoter (OC)
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7zxe
Q-score: 0.333
Rengachari S, Schilbach S, Kaliyappan T, Gouge J, Zumer K, Schwarz J, Urlaub H, Dienemann C, Vannini A, Cramer P
Nat Struct Mol Biol (2022) 29 pp. 1159-1169 [ Pubmed: 36424526 DOI: doi:10.1038/s41594-022-00857-w ]
- Zinc ion (65 Da, Ligand)
- Transcription initiation factor iia subunit 1 (41 kDa, Protein from Homo sapiens)
- Promoter (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 4 (159 kDa, Protein from Homo sapiens)
- Tata-box-binding protein and transcription factors (Complex from Homo sapiens)
- General transcription factors and snapc bound to u1 promoter (Complex)
- Snrna-activating protein complex subunit 3 (46 kDa, Protein from Homo sapiens)
- Snapc (Complex from Homo sapiens)
- Snrna-activating protein complex subunit 5 (11 kDa, Protein from Homo sapiens)
- Transcription initiation factor iib (34 kDa, Protein from Homo sapiens)
- Tata-box-binding protein (37 kDa, Protein from Homo sapiens)
- Transcription initiation factor iia subunit 2 (12 kDa, Protein from Homo sapiens)
- Template strand (29 kDa, DNA from Homo sapiens)
- Non-template strand (29 kDa, DNA from Homo sapiens)
- Snrna-activating protein complex subunit 1 (43 kDa, Protein from Homo sapiens)
Cryo-EM structure of the CBF3-core-Ndc10-DBD complex of the budding yeast kinetochore
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6gyp
Q-score: 0.402
Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D
Nat Struct Mol Biol (2018) 25 pp. 1103-1110 [ Pubmed: 30478265 DOI: doi:10.1038/s41594-018-0154-1 ]
- Cbf3-core-ndc10-dbd complex (Complex from Saccharomyces cerevisiae S288C)
- Threonine (119 Da, Ligand)
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Centromere dna-binding protein complex cbf3 subunit c (56 kDa, Protein from Saccharomyces cerevisiae S288C)
- Arginine (175 Da, Ligand)
- Centromere dna-binding protein complex cbf3 subunit a (112 kDa, Protein from Saccharomyces cerevisiae S288C)
- Methionine (149 Da, Ligand)
- Phenylalanine (165 Da, Ligand)
- Glutamine (146 Da, Ligand)
- Centromere dna-binding protein complex cbf3 subunit b (71 kDa, Protein from Saccharomyces cerevisiae S288C)
- Asparagine (132 Da, Ligand)
- Centromere dna-binding protein complex cbf3 subunit b (66 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast kinetochore
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6gys
Q-score: 0.245
Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D
Nat Struct Mol Biol (2018) 25 pp. 1103-1110 [ Pubmed: 30478265 DOI: doi:10.1038/s41594-018-0154-1 ]
- Dna (52-mer) (16 kDa, DNA from Saccharomyces cerevisiae)
- Cryo-em structure of the cbf3-cen3 complex of the budding yeast kinetochore (Complex from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit b (71 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit a (112 kDa, Protein from Saccharomyces cerevisiae)
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit c (56 kDa, Protein from Saccharomyces cerevisiae)
- Dna (52-mer) (15 kDa, DNA from Saccharomyces cerevisiae)
Cryo-EM structure of the CBF3-msk complex of the budding yeast kinetochore
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6gyu
Q-score: 0.47
Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D
Nat Struct Mol Biol (2018) 25 pp. 1103-1110 [ Pubmed: 30478265 DOI: doi:10.1038/s41594-018-0154-1 ]
- Zinc ion (65 Da, Ligand)
- Centromere dna-binding protein complex cbf3 subunit a (112 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Centromere dna-binding protein complex cbf3 subunit b (66 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Centromere dna-binding protein complex cbf3 subunit b (71 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cbf3-msk complex (Complex from Saccharomyces cerevisiae S288C)
- Centromere dna-binding protein complex cbf3 subunit c (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Three-dimensional structure of a pre-catalytic human spliceosomal complex B.
Boehringer D, Makarov EM, Sander B, Makarova OV, Kastner B, Luhrmann R, Stark H
Nat Struct Mol Biol (2004) 11 pp. 463-468 [ Pubmed: 15098019 DOI: doi:10.1038/nsmb761 ]