Cryo-EM structure of the CBF3-core-Ndc10-DBD complex of the budding yeast kinetochore
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6gyp
Q-score: 0.402
Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D
Nat Struct Mol Biol (2018) 25 pp. 1103-1110 [ Pubmed: 30478265 DOI: doi:10.1038/s41594-018-0154-1 ]
- Cbf3-core-ndc10-dbd complex (Complex from Saccharomyces cerevisiae S288C)
- Threonine (119 Da, Ligand)
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae S288C)
- Centromere dna-binding protein complex cbf3 subunit c (56 kDa, Protein from Saccharomyces cerevisiae S288C)
- Arginine (175 Da, Ligand)
- Centromere dna-binding protein complex cbf3 subunit a (112 kDa, Protein from Saccharomyces cerevisiae S288C)
- Methionine (149 Da, Ligand)
- Phenylalanine (165 Da, Ligand)
- Glutamine (146 Da, Ligand)
- Centromere dna-binding protein complex cbf3 subunit b (71 kDa, Protein from Saccharomyces cerevisiae S288C)
- Asparagine (132 Da, Ligand)
- Centromere dna-binding protein complex cbf3 subunit b (66 kDa, Protein from Saccharomyces cerevisiae S288C)
Cryo-EM structure of the CBF3-CEN3 complex of the budding yeast kinetochore
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 6gys
Q-score: 0.245
Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D
Nat Struct Mol Biol (2018) 25 pp. 1103-1110 [ Pubmed: 30478265 DOI: doi:10.1038/s41594-018-0154-1 ]
- Dna (52-mer) (16 kDa, DNA from Saccharomyces cerevisiae)
- Cryo-em structure of the cbf3-cen3 complex of the budding yeast kinetochore (Complex from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit b (71 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit a (112 kDa, Protein from Saccharomyces cerevisiae)
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit c (56 kDa, Protein from Saccharomyces cerevisiae)
- Dna (52-mer) (15 kDa, DNA from Saccharomyces cerevisiae)
Cryo-EM structure of the CBF3-msk complex of the budding yeast kinetochore
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6gyu
Q-score: 0.47
Yan K, Zhang Z, Yang J, McLaughlin SH, Barford D
Nat Struct Mol Biol (2018) 25 pp. 1103-1110 [ Pubmed: 30478265 DOI: doi:10.1038/s41594-018-0154-1 ]
- Zinc ion (65 Da, Ligand)
- Centromere dna-binding protein complex cbf3 subunit a (112 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Centromere dna-binding protein complex cbf3 subunit b (66 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Centromere dna-binding protein complex cbf3 subunit b (71 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Cbf3-msk complex (Complex from Saccharomyces cerevisiae S288C)
- Centromere dna-binding protein complex cbf3 subunit c (56 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6bqn
Q-score: 0.305
Noreng S, Bharadwaj A, Posert R, Yoshioka C, Baconguis I
eLife (2018) 7 [ DOI: doi:10.7554/eLife.39340 Pubmed: 30251954 ]
- Egfp-scnn1g chimera (55 kDa, Protein from Homo sapiens)
- 7b1 fab (9 kDa, Protein from Mus musculus)
- Membrane protein complex (Cell from Homo sapiens)
- 10d4 fab (9 kDa, Protein from Mus musculus)
- Scnn1a (54 kDa, Protein from Homo sapiens)
- Scnn1b (55 kDa, Protein from Homo sapiens)
- 10d4 fab (9 kDa, Protein from Mus musculus)
- 7b1 fab (10 kDa, Protein from Mus musculus)
cryoEM structure of membrane protein complex
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6c14
Q-score: 0.269
Ge J, Elferich J, Goehring A, Zhao J, Schuck P, Gouaux E
eLife (2018) 7 [ Pubmed: 30070639 DOI: doi:10.7554/eLife.38770 ]
- Lhfpl tetraspan subfamily member 5 protein (25 kDa, Protein from Mus musculus)
- Membrane protein complex (Complex from Mus musculus)
- Protocadherin-15 (37 kDa, Protein from Mus musculus)
Core Centromere Binding Factor 3 (CBF3) with monomeric Ndc10
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 6gsa
Q-score: 0.183
Zhang W, Lukoynova N, Miah S, Lucas J, Vaughan CK
Cell Rep (2018) 24 pp. 744-754 [ Pubmed: 30021170 DOI: doi:10.1016/j.celrep.2018.06.068 ]
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit a (66 kDa, Protein from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit c (60 kDa, Protein from Saccharomyces cerevisiae)
- Core cbf3 in complex with ndc10 d1-2 (286 kDa, Complex from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit b (68 kDa, Protein from Saccharomyces cerevisiae)
Cryo-EM structure of the core Centromere Binding Factor 3 complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6fe8
Q-score: 0.425
Zhang W, Lukoynova N, Miah S, Lucas J, Vaughan CK
Cell Rep (2018) 24 pp. 744-754 [ Pubmed: 30021170 DOI: doi:10.1016/j.celrep.2018.06.068 ]
- Centromere dna-binding protein complex cbf3 subunit c (60 kDa, Protein from Saccharomyces cerevisiae)
- Suppressor of kinetochore protein 1 (22 kDa, Protein from Saccharomyces cerevisiae)
- The core centromere binding factor 3 complex (220 kDa, Complex from Saccharomyces cerevisiae)
- Centromere dna-binding protein complex cbf3 subunit b (68 kDa, Protein from Saccharomyces cerevisiae)
Resolution: 4.5 Å
EM Method: Single-particle
Fitted PDBs: 6cmo
Q-score: 0.315
Kang Y, Kuybeda O, de Waal PW, Mukherjee S, Van Eps N, Dutka P, Zhou XE, Bartesaghi A, Erramilli S, Morizumi T, Gu X, Yin Y, Liu P, Jiang Y, Meng X, Zhao G, Melcher K, Ernst OP, Kossiakoff AA, Subramaniam S, Xu HE
Nature (2018) 558 pp. 553-558 [ DOI: doi:10.1038/s41586-018-0215-y Pubmed: 29899450 ]
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Rattus norvegicus)
- Fab light chain (23 kDa, Protein from synthetic construct)
- Protein complex of rhodopsin with galphai (180 MDa, Complex from Homo sapiens)
- Fab heavy chain (25 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Chimera protein of soluble cytochrome b562 and rhodopsin (52 kDa, Protein from Homo sapiens)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 6d9h
Q-score: 0.455
Draper-Joyce CJ, Khoshouei M, Thal DM, Liang YL, Nguyen ATN, Furness SGB, Venugopal H, Baltos JA, Plitzko JM, Danev R, Baumeister W, May LT, Wootten D, Sexton PM, Glukhova A, Christopoulos A
Nature (2018) 558 pp. 559-563 [ DOI: doi:10.1038/s41586-018-0236-6 Pubmed: 29925945 ]
- Guanine nucleotide-binding protein g(i) subunit alpha-2 (40 kDa, Protein from Homo sapiens)
- Human adenosine a1 receptor-gi2-protein complex bound to its endogenous agonist adenosine (Complex from Homo sapiens)
- Chimera protein of muscarinic acetylcholine receptor m4 and adenosine receptor a1 (43 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (38 kDa, Protein from Homo sapiens)
- Adenosine (267 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
Resolution: 35.0 Å
EM Method: Single-particle
Fitted PDBs: 6bbp
Q-score: 0.056
Malaby AW, Das S, Chakravarthy S, Irving TC, Bilsel O, Lambright DG
Structure (2018) 26 pp. 106-117.e6 [ Pubmed: 29276036 DOI: doi:10.1016/j.str.2017.11.019 ]
- Cytohesin-3,adp-ribosylation factor 6 (60 kDa, Protein from Homo sapiens)
- Truncated monomeric cytohesin-3 (grp1; amino acids 63-399) e161a 6gs arf6 q67l fusion protein complex with gtp, mg and inositol 1,3,4,5 tetrakisphosphate (Complex from Mus musculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Inositol-(1,3,4,5)-tetrakisphosphate (500 Da, Ligand)
- Magnesium ion (24 Da, Ligand)