Resolution: 5.51 Å
EM Method: Single-particle
Fitted PDBs: 7sc6
Q-score: 0.151
Bonilla SL, Sherlock ME, MacFadden A, Kieft JS
Science (2021) 374 pp. 955-960 [ DOI: doi:10.1126/science.abe8526 Pubmed: 34793227 ]
- Rna-protein complex: tyrosyl-trna synthetase from phaseolus vulgaris bound to trna-like structure from brome mosaic virus rna 3. (Complex from Phaseolus vulgaris)
- Tyrosine--trna ligase (45 kDa, Protein from Phaseolus vulgaris)
- Trna-like structure from brome mosaic virus rna 3 (55 kDa, RNA from Brome mosaic virus)
Serotonin 1D (5-HT1D) receptor-Gi protein complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7e32
Q-score: 0.495
Xu P, Huang S, Zhang H, Mao C, Zhou XE, Cheng X, Simon IA, Shen DD, Yen HY, Robinson CV, Harpsoe K, Svensson B, Guo J, Jiang H, Gloriam DE, Melcher K, Jiang Y, Zhang Y, Xu HE
Nature (2021) 592 pp. 469-473 [ DOI: doi:10.1038/s41586-021-03376-8 Pubmed: 33762731 ]
- Serotonin 1d (5-ht1d) receptor-gi protein complex (Complex)
- Serotonin (176 Da, Ligand)
- Guanine nucleotide-binding protein g(i) subunit alpha-1 (40 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Scfv16 (Complex from Mus musculus)
- Soluble cytochrome b562,5-hydroxytryptamine receptor 1d (57 kDa, Protein from Homo sapiens)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (37 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Receptor-gi protein (Complex from Homo sapiens)
- Scfv16 (26 kDa, Protein from Mus musculus)
Cryo-EM structure of the human glucagon-like peptide-2 receptor-Gs protein complex
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7d68
Q-score: 0.524
Sun W, Chen LN, Zhou Q, Zhao LH, Yang D, Zhang H, Cong Z, Shen DD, Zhao F, Zhou F, Cai X, Chen Y, Zhou Y, Gadgaard S, van der Velden WJC, Zhao S, Jiang Y, Rosenkilde MM, Xu HE, Zhang Y, Wang MW
Cell Res (2020) 30 pp. 1098-1108 [ Pubmed: 33239759 DOI: doi:10.1038/s41422-020-00442-0 ]
- Guanine nucleotide-binding protein (Complex from Bos taurus)
- Water (18 Da, Ligand)
- Glucagon-like peptide 2 receptor (75 kDa, Protein from Homo sapiens)
- Nanobody-35 (13 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Bos taurus)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (40 kDa, Protein from Bos taurus)
- Pro-glucagon (3 kDa, Protein from Homo sapiens)
- Nanobody-35 (Complex from synthetic construct)
- Cryo-em structure of the human glucagon-like peptide-2 receptor-gs protein complex (Complex)
- Glucagon-like peptide 2 receptor (Complex from Homo sapiens)
- Guanine nucleotide-binding protein g(s) subunit alpha isoforms short (43 kDa, Protein from Bos taurus)
Cryo-EM structure of an activated VIP1 receptor-G protein complex
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6vn7
Q-score: 0.427
Duan J, Shen DD, Zhou XE, Bi P, Liu QF, Tan YX, Zhuang YW, Zhang HB, Xu PY, Huang SJ, Ma SS, He XH, Melcher K, Zhang Y, Xu HE, Jiang Y
Nat Commun (2020) 11 pp. 4121-4121 [ DOI: doi:10.1038/s41467-020-17933-8 Pubmed: 32807782 ]
- Guanine nucleotide-binding protein g(s) subunit alpha isoforms short (45 kDa, Protein from Homo sapiens)
- Vasoactive intestinal polypeptide receptor 1 (66 kDa, Protein from Homo sapiens)
- Palmitic acid (256 Da, Ligand)
- Guanine nucleotide-binding protein g(i)/g(s)/g(o) subunit gamma-2 (7 kDa, Protein from Homo sapiens)
- Pituitary adenylate cyclase-activating polypeptide (3 kDa, Protein from Homo sapiens)
- Pacap27-vip1r-gs protein complex stabilized by nanobody 35 and nanobit system (Complex from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Nanobody 35 (14 kDa, Protein from synthetic construct)
- Guanine nucleotide-binding protein g(i)/g(s)/g(t) subunit beta-1 (41 kDa, Protein from Homo sapiens)
Human ER membrane protein complex in a lipid nanodisc, overall map
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 6ww7
Q-score: 0.49
Pleiner T, Tomaleri GP, Januszyk K, Inglis AJ, Hazu M, Voorhees RM
Science (2020) 369 pp. 433-436 [ DOI: doi:10.1126/science.abb5008 Pubmed: 32439656 ]
- Membrane magnesium transporter 1 (14 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 10 (27 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 1 (111 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 3 (29 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 6 (12 kDa, Protein from Homo sapiens)
- Human er membrane protein complex (Complex from Homo sapiens)
- Er membrane protein complex subunit 8 (23 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 4 (1 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
- Er membrane protein complex subunit 2 (34 kDa, Protein from Homo sapiens)
- Er membrane protein complex subunit 7 (26 kDa, Protein from Homo sapiens)
Structure of SIVsmm Nef and SMM tetherin bound to the clathrin adaptor AP-2 complex
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 6owt
Q-score: 0.372
Buffalo CZ, Sturzel CM, Heusinger E, Kmiec D, Kirchhoff F, Hurley JH, Ren X
Cell Host Microbe (2019) 26 pp. 359-368.e8 [ Pubmed: 31447307 DOI: doi:10.1016/j.chom.2019.08.002 ]
- Ap-2 complex subunit alpha (104 kDa, Protein from Rattus norvegicus)
- Adaptor protein complex ap-2, mu1 (16 kDa, Protein from Mus musculus)
- Ap-2 complex subunit sigma (17 kDa, Protein from Rattus norvegicus)
- Ap-2 complex subunit beta (66 kDa, Protein from Rattus norvegicus)
- Structure of sivsmm nef and smm tetherin bound to the clathrin adaptor ap-2 complex (203 kDa, Complex from Rattus norvegicus)
- Tetherin,protein nef (31 kDa, Protein from Simian immunodeficiency virus)
Cryo-EM Structure of Saccharomyces cerevisiae Target of Rapamycin Complex 2
Resolution: 7.9 Å
EM Method: Single-particle
Fitted PDBs: 6emk
Q-score: 0.145
Karuppasamy M, Kusmider B, Oliveira TM, Gaubitz C, Prouteau M, Loewith R, Schaffitzel C
Nat Commun (2017) 8 pp. 1729-1729 [ Pubmed: 29170376 DOI: doi:10.1038/s41467-017-01862-0 ]
- Serine/threonine-protein kinase tor2 (281 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Target of rapamycin protein complex 2 (1 MDa, Complex from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Target of rapamycin complex 2 subunit avo1 (131 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Target of rapamycin complex 2 subunit avo2 (47 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Target of rapamycin complex 2 subunit tsc11 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Target of rapamycin complex subunit lst8 (34 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))