Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map IV)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map III)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map II)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map V)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VI)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VII)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (map VIII)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Cryo-EM reconstruction of TC-NER transcription elongation complex with STK19 (Consensus refinement)
Mevissen TET, Kummecke M, Schmid EW, Farnung L, Walter JC
Cell (2024) 187 pp. 7091-7106.e24 [ DOI: doi:10.1016/j.cell.2024.10.020 Pubmed: 39547228 ]
- Transcription-coupled nucleotide excision repair complex (Complex)
- Rna polymerase ii proteins (Complex from Sus scrofa)
- Nucleic acid (Complex from synthetic construct)
- Csb, uvssa (Complex from Homo sapiens)
- Dda1, elof1, stk19 (Complex from Homo sapiens)
- Csa, ddb1 (Complex from Homo sapiens)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ted
Q-score: 0.338
Vos SM, Farnung L, Linden A, Urlaub H, Cramer P
Nat Struct Mol Biol (2020) 27 pp. 668-677 [ Pubmed: 32541898 DOI: doi:10.1038/s41594-020-0437-1 ]
- Transcription elongation factor spt4 and spt5 (Complex from Homo sapiens)
- Rna (5'-r(p*up*ap*ap*cp*cp*gp*gp*ap*gp*ap*gp*gp*gp*ap*ap*cp*cp*cp*ap*cp*u)-3') (14 kDa, RNA from synthetic construct)
- Uncharacterized protein (13 kDa, Protein from Sus scrofa)
- Rna polymerase ii subunit g (19 kDa, Protein from Sus scrofa)
- Human transcription factors and associated proteins (Complex from Homo sapiens)
- Transcription elongation factor spt4 (13 kDa, Protein from Homo sapiens)
- Rna polymerase ii-associated factor 1 homolog (60 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- Complete ec* (1 MDa, Complex)
- Dna-directed rna polymerase subunit (219 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (17 kDa, Protein from Sus scrofa)
- Uncharacterized protein (7 kDa, Protein from Sus scrofa)
- Template dna (14 kDa, DNA from synthetic construct)
- Rna polymerase ii subunit e (24 kDa, Protein from Sus scrofa)
- Rna polymerase-associated protein ctr9 homolog (134 kDa, Protein from Homo sapiens)
- Rna polymerase ii subunit f (14 kDa, Protein from Sus scrofa)
- Dna-directed rna polymerase ii subunit rpb9 (14 kDa, Protein from Sus scrofa)
- Rna polymerase-associated protein rtf1 homolog (80 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Rna polymerase ii subunit c (31 kDa, Protein from Sus scrofa)
- Wd repeat-containing protein 61 (33 kDa, Protein from Homo sapiens)
- Rna polymerase-associated protein leo1 (75 kDa, Protein from Homo sapiens)
- Transcription elongation factor spt5 (121 kDa, Protein from Homo sapiens)
- Pig dna/rna polymerase subunits (Complex from Sus scrofa)
- Dna (37-mer) (14 kDa, DNA from synthetic construct)
- Rna polymerase ii subunit d (16 kDa, Protein from Sus scrofa)
- Transcription elongation factor spt6 (199 kDa, Protein from Homo sapiens)
- Parafibromin (60 kDa, Protein from Homo sapiens)
- Dna-directed rna polymerase subunit beta (142 kDa, Protein from Sus scrofa)
- Uncharacterized protein (7 kDa, Protein from Sus scrofa)
- Dna/rna (Complex from synthetic construct)
Structure of LEDGF PWWP domain bound H3K36 methylated nucleosome
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6s01
Q-score: 0.529
Wang H, Farnung L, Dienemann C, Cramer P
Nat Struct Mol Biol (2020) 27 pp. 8-13 [ DOI: doi:10.1038/s41594-019-0345-4 Pubmed: 31819277 ]
- Wisdom 601 dna (165-mer) (Complex from synthetic construct)
- Histone h2a (13 kDa, Protein from Xenopus laevis)
- Histone h2b 1.1 (13 kDa, Protein from Xenopus laevis)
- Wisdom 601 dna (165-mer) (50 kDa, DNA from synthetic construct)
- H3k36me3 nucleosome-ledgf complex (250 kDa, Complex)
- Wisdom 601 dna (165-mer) (51 kDa, DNA from synthetic construct)
- Histone h3 (15 kDa, Protein from Xenopus laevis)
- Histone h4 (11 kDa, Protein from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (60 kDa, Protein from Homo sapiens)
- Histone proteins (Complex from Xenopus laevis)
- Pc4 and sfrs1-interacting protein (Complex from Homo sapiens)