Structure of PSII-ACPII supercomplex from cryptophyte algae
Resolution: 2.47 Å
EM Method: Single-particle
Fitted PDBs: 8wb4
Q-score: 0.539
Mao Z, Li X, Li Z, Shen L, Li X, Yang Y, Wang W, Kuang T, Shen JR, Han G
Nat Commun (2024) 15 pp. 4535-4535 [ DOI: doi:10.1038/s41467-024-48878-x Pubmed: 38806516 ]
- Chlorophyll c2 (608 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Chroomonas placoidea)
- Photosystem ii d2 protein (39 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center x protein (4 kDa, Protein from Chroomonas placoidea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein k (5 kDa, Protein from Chroomonas placoidea)
- Ccpii-s (30 kDa, Protein from Chroomonas placoidea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii reaction center protein r (2 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein i (4 kDa, Protein from Chroomonas placoidea)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{r},4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Photosystem ii reaction center protein j (3 kDa, Protein from Chroomonas placoidea)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii reaction center protein t (3 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein g (5 kDa, Protein from Chroomonas placoidea)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein u (15 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein q (1 kDa, Protein from Chroomonas placoidea)
- Photosystem ii protein d1 (39 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein ycf12 (3 kDa, Protein from Chroomonas placoidea)
- Fe (ii) ion (55 Da, Ligand)
- Acpii-4 (23 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Chroomonas placoidea)
- Acpii-5 (23 kDa, Protein from Chroomonas placoidea)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Chroomonas placoidea)
- Acpii-1 (25 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein w (11 kDa, Protein from Chroomonas placoidea)
- Photosystem ii cp43 reaction center protein (50 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein o (34 kDa, Protein from Chroomonas placoidea)
- Acpii-6 (23 kDa, Protein from Chroomonas placoidea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Chlorophyll a (893 Da, Ligand)
- Photosystem ii cytochrome c550 (17 kDa, Protein from Chroomonas placoidea)
- Acpii-3 (24 kDa, Protein from Chroomonas placoidea)
- Structure of psii-acpii supercomplex from cryptophyte algae (Complex from Chroomonas placoidea)
- Photosystem ii reaction center m (11 kDa, Protein from Chroomonas placoidea)
- Photosystem ii reaction center protein h (7 kDa, Protein from Chroomonas placoidea)
- Cytochrome b559 subunit beta (4 kDa, Protein from Chroomonas placoidea)
- Chloride ion (35 Da, Ligand)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Chroomonas placoidea)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Acpii-2 (23 kDa, Protein from Chroomonas placoidea)
Structure of ACPII-CCPII from cryptophyte algae
Resolution: 2.84 Å
EM Method: Single-particle
Fitted PDBs: 8xkl
Q-score: 0.49
Mao Z, Li X, Li Z, Shen L, Li X, Yang Y, Wang W, Kuang T, Shen JR, Han G
Nat Commun (2024) 15 pp. 4535-4535 [ DOI: doi:10.1038/s41467-024-48878-x Pubmed: 38806516 ]
- Chlorophyll a (893 Da, Ligand)
- Chlorophyll c2 (608 Da, Ligand)
- Acpii-4 (23 kDa, Protein from Chroomonas placoidea)
- Acpii-3 (24 kDa, Protein from Chroomonas placoidea)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-(2,6,6-trimethylcyclohexen-1-yl)octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (550 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-3,5,7,9,11,13,15-heptaen-1,17-diynyl]cyclohex-3-en-1-ol (564 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e},17~{e})-3,7,12,16-tetramethyl-18-[(1~{r},4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohex-2-en-1-yl]octadeca-3,5,7,9,11,13,15,17-octaen-1-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Acpii-5 (23 kDa, Protein from Chroomonas placoidea)
- Acpii-1 (25 kDa, Protein from Chroomonas placoidea)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Photosystem ii reaction center protein g (5 kDa, Protein from Chroomonas placoidea)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Ccpii-s (30 kDa, Protein from Chroomonas placoidea)
- Structure of acpii-ccpii from cryptophyte algae (Complex from Chroomonas placoidea)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Acpii-6 (23 kDa, Protein from Chroomonas placoidea)
- Acpii-2 (23 kDa, Protein from Chroomonas placoidea)
PSII-Pcb Dimer of Acaryochloris Marina
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ymi
Q-score: 0.538
Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G
Sci Adv (2024) 10 pp. eadk7140-eadk7140 [ DOI: doi:10.1126/sciadv.adk7140 Pubmed: 38394197 ]
- Photosystem ii protein psbi (3 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center x protein (4 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (37 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii protein d1 2 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein ycf12 (4 kDa, Protein from Acaryochloris marina MBIC11017)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Unknown protein (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein t (5 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii protein y (11 kDa, Protein from Acaryochloris marina MBIC11017)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii d2 protein 1 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Psii-pcb dimer of acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
- Chlorophyll d (895 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Fe (ii) ion (55 Da, Ligand)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii 10 kda phosphoprotein psbh (7 kDa, Protein from Acaryochloris marina MBIC11017)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp43 reaction center protein (53 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Acaryochloris marina MBIC11017)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
PSII-Pcb Tetramer of Acaryochloris Marina
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ymm
Q-score: 0.415
Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G
Sci Adv (2024) 10 pp. eadk7140-eadk7140 [ DOI: doi:10.1126/sciadv.adk7140 Pubmed: 38394197 ]
- Photosystem ii protein psbi (3 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center x protein (4 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psii-pcb tetramer of acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (37 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii protein d1 2 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein ycf12 (4 kDa, Protein from Acaryochloris marina MBIC11017)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Unknown protein (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein t (5 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii protein y (11 kDa, Protein from Acaryochloris marina MBIC11017)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii d2 protein 1 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Acaryochloris marina MBIC11017)
- Chlorophyll d (895 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Fe (ii) ion (55 Da, Ligand)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii 10 kda phosphoprotein psbh (7 kDa, Protein from Acaryochloris marina MBIC11017)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp43 reaction center protein (53 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Acaryochloris marina MBIC11017)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)