Resolution: 2.93 Å
EM Method: Single-particle
Fitted PDBs: 8j5k
Q-score: 0.504
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W
Nat Commun (2023) 14 pp. 8164-8164 [ DOI: doi:10.1038/s41467-023-44055-8 Pubmed: 38071196 ]
- Psbe (8 kDa, Protein from Stephanocyclus meneghinianus)
- Psbu (10 kDa, Protein from Stephanocyclus meneghinianus)
- Psbm (4 kDa, Protein from Stephanocyclus meneghinianus)
- Beta-carotene (536 Da, Ligand)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- Psbf (3 kDa, Protein from Stephanocyclus meneghinianus)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Fcpii-j, fucoxanthin chlorophyll a/c binding protein (17 kDa, Protein from Stephanocyclus meneghinianus)
- Psby (3 kDa, Protein from Stephanocyclus meneghinianus)
- Psbt (3 kDa, Protein from Stephanocyclus meneghinianus)
- Psbb (53 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-i, fucoxanthin chlorophyll a/c binding protein (23 kDa, Protein from Stephanocyclus meneghinianus)
- Ca-mn4-o5 cluster (339 Da, Ligand)
- Psbd (37 kDa, Protein from Stephanocyclus meneghinianus)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Psbx (3 kDa, Protein from Stephanocyclus meneghinianus)
- Psbo (26 kDa, Protein from Stephanocyclus meneghinianus)
- Psbz (6 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-g, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Pheophytin a (871 Da, Ligand)
- Fe (ii) ion (55 Da, Ligand)
- Fcpii-h2, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Psbk (4 kDa, Protein from Stephanocyclus meneghinianus)
- Psbw (5 kDa, Protein from Stephanocyclus meneghinianus)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Psbh (7 kDa, Protein from Stephanocyclus meneghinianus)
- Psb34 (2 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-k, fucoxanthin chlorophyll a/c binding protein (13 kDa, Protein from Stephanocyclus meneghinianus)
- Cm-psii-fcpii (Complex from Stephanocyclus meneghinianus)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Psbc (49 kDa, Protein from Stephanocyclus meneghinianus)
- Fcpii-h1, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Psbj (3 kDa, Protein from Stephanocyclus meneghinianus)
- Chlorophyll a (893 Da, Ligand)
- Psbl (4 kDa, Protein from Stephanocyclus meneghinianus)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Psbv (14 kDa, Protein from Stephanocyclus meneghinianus)
- Chloride ion (35 Da, Ligand)
- Psbq' (16 kDa, Protein from Stephanocyclus meneghinianus)
- Psba (36 kDa, Protein from Stephanocyclus meneghinianus)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
- Psbi (3 kDa, Protein from Stephanocyclus meneghinianus)
Structure of PSII-FCPII-G/H complex in the PSII-FCPII supercomplex from Cyclotella meneghiniana
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 8w4o
Q-score: 0.531
Zhao S, Shen L, Li X, Tao Q, Li Z, Xu C, Zhou C, Yang Y, Sang M, Han G, Yu LJ, Kuang T, Shen JR, Wang W
Nat Commun (2023) 14 pp. 8164-8164 [ DOI: doi:10.1038/s41467-023-44055-8 Pubmed: 38071196 ]
- Cm-psii-fcpii-g/h (Complex from Stephanocyclus meneghinianus)
- Fcpii-h1, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- (3s,3's,5r,5'r,6s,6'r,8'r)-3,5'-dihydroxy-8-oxo-6',7'-didehydro-5,5',6,6',7,8-hexahydro-5,6-epoxy-beta,beta-caroten-3'- yl acetate (658 Da, Ligand)
- Fcpii-g, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- (1~{r})-3,5,5-trimethyl-4-[(1~{e},3~{e},5~{e},7~{e},9~{e},11~{e},13~{e},15~{e})-3,7,12,16-tetramethyl-18-[(4~{r})-2,6,6-trimethyl-4-oxidanyl-cyclohexen-1-yl]octadeca-1,3,5,7,9,11,13,15-octaen-17-ynyl]cyclohex-3-en-1-ol (566 Da, Ligand)
- (3s,3'r,5r,6s,7cis)-7',8'-didehydro-5,6-dihydro-5,6-epoxy-beta,beta-carotene-3,3'-diol (582 Da, Ligand)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Fcpii-h2, fucoxanthin chlorophyll a/c binding protein (18 kDa, Protein from Stephanocyclus meneghinianus)
- Chlorophyll a (893 Da, Ligand)
PSII-Pcb Dimer of Acaryochloris Marina
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7ymi
Q-score: 0.538
Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G
Sci Adv (2024) 10 pp. eadk7140-eadk7140 [ DOI: doi:10.1126/sciadv.adk7140 Pubmed: 38394197 ]
- Photosystem ii protein psbi (3 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center x protein (4 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (37 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii protein d1 2 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein ycf12 (4 kDa, Protein from Acaryochloris marina MBIC11017)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Unknown protein (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein t (5 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii protein y (11 kDa, Protein from Acaryochloris marina MBIC11017)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii d2 protein 1 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Psii-pcb dimer of acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
- Chlorophyll d (895 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Fe (ii) ion (55 Da, Ligand)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii 10 kda phosphoprotein psbh (7 kDa, Protein from Acaryochloris marina MBIC11017)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp43 reaction center protein (53 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Acaryochloris marina MBIC11017)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)
PSII-Pcb Tetramer of Acaryochloris Marina
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7ymm
Q-score: 0.415
Shen L, Gao Y, Tang K, Qi R, Fu L, Chen JH, Wang W, Ma X, Li P, Chen M, Kuang T, Zhang X, Shen JR, Wang P, Han G
Sci Adv (2024) 10 pp. eadk7140-eadk7140 [ DOI: doi:10.1126/sciadv.adk7140 Pubmed: 38394197 ]
- Photosystem ii protein psbi (3 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center x protein (4 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-distearoyl-monogalactosyl-diglyceride (787 Da, Ligand)
- Psii-pcb tetramer of acaryochloris marina (Complex from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (37 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
- Photosystem ii protein d1 2 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein ycf12 (4 kDa, Protein from Acaryochloris marina MBIC11017)
- (6'r,11cis,11'cis,13cis,15cis)-4',5'-didehydro-5',6'-dihydro-beta,beta-carotene (536 Da, Ligand)
- Unknown protein (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii reaction center protein t (5 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii protein y (11 kDa, Protein from Acaryochloris marina MBIC11017)
- Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
- Bicarbonate ion (61 Da, Ligand)
- Photosystem ii reaction center protein k (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii d2 protein 1 (39 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp47 reaction center protein (56 kDa, Protein from Acaryochloris marina MBIC11017)
- Chlorophyll d (895 Da, Ligand)
- Pheophytin a (871 Da, Ligand)
- Photosystem ii reaction center protein m (3 kDa, Protein from Acaryochloris marina MBIC11017)
- Fe (ii) ion (55 Da, Ligand)
- (1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
- Photosystem ii 10 kda phosphoprotein psbh (7 kDa, Protein from Acaryochloris marina MBIC11017)
- Protoporphyrin ix containing fe (616 Da, Ligand)
- Photosystem ii reaction center protein l (4 kDa, Protein from Acaryochloris marina MBIC11017)
- Photosystem ii cp43 reaction center protein (53 kDa, Protein from Acaryochloris marina MBIC11017)
- 1,2-di-o-acyl-3-o-[6-deoxy-6-sulfo-alpha-d-glucopyranosyl]-sn-glycerol (795 Da, Ligand)
- Photosystem ii reaction center protein z (6 kDa, Protein from Acaryochloris marina MBIC11017)
- Cytochrome b559 subunit alpha (9 kDa, Protein from Acaryochloris marina MBIC11017)
- High light inducible protein (38 kDa, Protein from Acaryochloris marina MBIC11017)
- 2,3-dimethyl-5-(3,7,11,15,19,23,27,31,35-nonamethyl-2,6,10,14,18,22,26,30,34-hexatriacontanonaenyl-2,5-cyclohexadiene-1,4-dione-2,3-dimethyl-5-solanesyl-1,4-benzoquinone (749 Da, Ligand)