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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"R2" AND author_name:"T" AND author_name:"Shen" AND xref_links:"scop2"

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EMD-24307

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Structure of the translating Neurospora crassa ribosome arrested by cycloheximide

Release date: Dec. 1, 2021
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7r81
Q-score: 0.539

Shen L, Su Z, Yang K, Wu C, Becker T, Bell-Pedersen D, Zhang J, Sachs MS

PNAS (2021) 118 [ Pubmed: 34815343 DOI: doi:10.1073/pnas.2111862118 ]

Sample:

40s ribosomal protein s21 (9 kDa, Protein from Neurospora crassa)
40s ribosomal protein s6 (27 kDa, Protein from Neurospora crassa)
60s ribosomal protein l10 (25 kDa, Protein from Neurospora crassa)
40s ribosomal protein s29 (6 kDa, Protein from Neurospora crassa)
40s ribosomal protein s1 (29 kDa, Protein from Neurospora crassa)
40s ribosomal protein s20 (13 kDa, Protein from Neurospora crassa)
Cytoplasmic ribosomal protein 10 (28 kDa, Protein from Neurospora crassa)
40s ribosomal protein s5 (23 kDa, Protein from Neurospora crassa)
60s ribosomal protein l20 (20 kDa, Protein from Neurospora crassa)
Ribosomal_l28e domain-containing protein (16 kDa, Protein from Neurospora crassa)
Ribosomal protein l19 (22 kDa, Protein from Neurospora crassa)
60s ribosomal protein l15 (24 kDa, Protein from Neurospora crassa)
Trna (Complex from Neurospora crassa)
60s ribosomal protein l32 (15 kDa, Protein from Neurospora crassa)
40s ribosomal protein s13 (16 kDa, Protein from Neurospora crassa)
40s ribosomal protein s4 (29 kDa, Protein from Neurospora crassa)
40s ribosomal protein s25 (10 kDa, Protein from Neurospora crassa)
Ribosomal protein l37 (10 kDa, Protein from Neurospora crassa)
40s ribosomal protein s27 (8 kDa, Protein from Neurospora crassa)
60s ribosomal protein l6 (22 kDa, Protein from Neurospora crassa)
60s ribosomal protein l27 (el27) (15 kDa, Protein from Neurospora crassa)
40s ribosomal protein s8 (23 kDa, Protein from Neurospora crassa)
40s ribosomal protein s16 (15 kDa, Protein from Neurospora crassa)
40s ribosomal protein s12 (16 kDa, Protein from Neurospora crassa)
60s ribosomal protein l23 (14 kDa, Protein from Neurospora crassa)
Ribosomal protein l26 (15 kDa, Protein from Neurospora crassa)
60s ribosomal protein l8 (29 kDa, Protein from Neurospora crassa)
26s rrna (1 MDa, RNA from Neurospora crassa)
Magnesium ion (24 Da, Ligand)
40s ribosomal protein s11 (18 kDa, Protein from Neurospora crassa)
60s ribosomal protein l40 (6 kDa, Protein from Neurospora crassa)
Nascent peptide (Complex from Neurospora crassa)
40s ribosomal protein s9 (21 kDa, Protein from Neurospora crassa)
Nascent peptide (358 Da, Protein from Neurospora crassa)
60s ribosomal protein l22 (14 kDa, Protein from Neurospora crassa)
40s ribosomal protein s19 (16 kDa, Protein from Neurospora crassa)
60s ribosomal protein l36 (11 kDa, Protein from Neurospora crassa)
60s ribosomal protein l4-a (38 kDa, Protein from Neurospora crassa)
60s ribosomal protein l44 (11 kDa, Protein from Neurospora crassa)
40s ribosomal subunit (Complex from Neurospora crassa)
Ribosomal protein s12 (17 kDa, Protein from Neurospora crassa)
40s ribosomal protein s7 (22 kDa, Protein from Neurospora crassa)
40s ribosomal protein s2 (28 kDa, Protein from Neurospora crassa)
60s ribosomal protein l3 (44 kDa, Protein from Neurospora crassa)
Trna (24 kDa, RNA from Neurospora crassa)
40s ribosomal protein s18 (17 kDa, Protein from Neurospora crassa)
5.8s rrna (50 kDa, RNA from Neurospora crassa)
60s ribosomal protein l30 (11 kDa, Protein from Neurospora crassa)
60s ribosomal protein l17 (20 kDa, Protein from Neurospora crassa)
40s ribosomal protein s28 (7 kDa, Protein from Neurospora crassa)
60s ribosomal protein l38 (9 kDa, Protein from Neurospora crassa)
Ribosomal protein srp1 (18 kDa, Protein from Neurospora crassa)
60s ribosomal protein l29 (7 kDa, Protein from Neurospora crassa)
4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
60s ribosomal protein l34 (13 kDa, Protein from Neurospora crassa)
Hypothetical protein ncu16635 (el41) (3 kDa, Protein from Neurospora crassa)
60s ribosomal protein l7 (28 kDa, Protein from Neurospora crassa)
40s ribosomal protein s0 (31 kDa, Protein from Neurospora crassa)
60s ribosomal protein l39 (6 kDa, Protein from Neurospora crassa)
60s ribosomal protein l2 (27 kDa, Protein from Neurospora crassa)
18s rrna (578 kDa, RNA from Neurospora crassa)
60s ribosomal protein l9 (21 kDa, Protein from Neurospora crassa)
Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Neurospora crassa)
60s ribosomal protein l28 (16 kDa, Protein from Neurospora crassa)
60s ribosomal protein l35 (14 kDa, Protein from Neurospora crassa)
60s ribosomal protein l11 (20 kDa, Protein from Neurospora crassa)
Mrna (Complex from Neurospora crassa)
60s ribosomal protein l18 (20 kDa, Protein from Neurospora crassa)
60s ribosomal protein l33 (12 kDa, Protein from Neurospora crassa)
60s ribosomal protein l24 (17 kDa, Protein from Neurospora crassa)
40s ribosomal protein s17 (16 kDa, Protein from Neurospora crassa)
Ribosomal protein l14 (15 kDa, Protein from Neurospora crassa)
40s ribosomal protein s26e (13 kDa, Protein from Neurospora crassa)
60s ribosomal subunit (Complex from Neurospora crassa)
60s ribosomal protein l16 (26 kDa, Protein from Neurospora crassa)
Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Neurospora crassa)
40s ribosomal protein s14 (us11) (16 kDa, Protein from Neurospora crassa)
60s ribosomal protein l5 (34 kDa, Protein from Neurospora crassa)
40s ribosomal protein s24 (15 kDa, Protein from Neurospora crassa)
Structure of the translating neurospora crassa ribosome arrested by cycloheximide (Complex)
60s ribosomal protein l43 (10 kDa, Protein from Neurospora crassa)
Mrna (5 kDa, RNA from Neurospora crassa)
60s ribosomal protein (14 kDa, Protein from Neurospora crassa)
60s ribosomal protein l13 (23 kDa, Protein from Neurospora crassa)
60s ribosomal protein l25 (17 kDa, Protein from Neurospora crassa)
40s ribosomal protein s23 (15 kDa, Protein from Neurospora crassa)
40s ribosomal protein s22 (14 kDa, Protein from Neurospora crassa)
5s rrna (38 kDa, RNA from Neurospora crassa)
40s ribosomal protein s30 (6 kDa, Protein from Neurospora crassa)
Probable 40s ribosomal protein s10-b (18 kDa, Protein from Neurospora crassa)
Spermidine (145 Da, Ligand)

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EMD-6929

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Cryo-EM structure of the red algal PSI-LHCR

Release date: April 25, 2018
Resolution: 3.63 Å
EM Method: Single-particle
Fitted PDBs: 5zgb
Q-score: 0.399

Pi X, Tian L, Dai HE, Qin X, Cheng L, Kuang T, Sui SF, Shen JR

PNAS (2018) 115 pp. 4423-4428 [ Pubmed: 29632169 DOI: doi:10.1073/pnas.1722482115 ]

Sample:

Lhcr2 (21 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
(2s)-2,3-dihydroxypropyl octadecanoate (358 Da, Ligand)
1-dodecanol (186 Da, Ligand)
Psaj (4 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Beta-carotene (536 Da, Ligand)
1,2-dipalmitoyl-phosphatidyl-glycerole (722 Da, Ligand)
Lhcr1 (19 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Psak (6 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Psaa (82 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Lhcr3 (20 kDa, Protein from Cyanidioschyzon merolae strain 10D)
Digalactosyl diacyl glycerol (dgdg) (949 Da, Ligand)
Psab (82 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Psao (16 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Beta-d-glucopyranose (180 Da, Ligand)
Psi-5lhcr (Complex from Cyanidioschyzon merolae)
(1r,2s)-4-{(1e,3e,5e,7e,9e,11e,13e,15e,17e)-18-[(4s)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-3,7,12,16-tetramethyloctadeca-1,3,5,7,9,11,13,15,17-nonaen-1-yl}-2,5,5-trimethylcyclohex-3-en-1-ol (568 Da, Ligand)
Psam (3 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Phylloquinone (450 Da, Ligand)
Psad (15 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Psai (3 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Chlorophyll a (893 Da, Ligand)
Psae (10 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Psal (15 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Iron/sulfur cluster (351 Da, Ligand)
Psac (8 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Psaf (21 kDa, Protein from Cyanidioschyzon merolae (strain 10D))
Chlorophyll a isomer (893 Da, Ligand)

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EMDB [2]

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