STRUCTURE OF PHOTOSYNTHETIC LH1-RC SUPER-COMPLEX OF Allochromatium tepidum
Resolution: 2.81 Å
EM Method: Single-particle
Fitted PDBs: 7vrj
Q-score: 0.601
Tani K, Kobayashi K, Hosogi N, Ji XC, Nagashima S, Nagashima KVP, Izumida A, Inoue K, Tsukatani Y, Kanno R, Hall M, Yu LJ, Ishikawa I, Okura Y, Madigan MT, Mizoguchi A, Humbel BM, Kimura Y, Wang-Otomo ZY
J Biol Chem (2022) 298 pp. 101967-101967 [ Pubmed: 35460693 DOI: doi:10.1016/j.jbc.2022.101967 ]
- Light-harvesting protein lh1 beta3 (5 kDa, Protein from Allochromatium tepidum)
- Cardiolipin (1 kDa, Ligand)
- Lauryl dimethylamine-n-oxide (229 Da, Ligand)
- Photosynthetic reaction center cytochrome c subunit (43 kDa, Protein from Allochromatium tepidum)
- Dodecyl-beta-d-maltoside (510 Da, Ligand)
- Light-harvesting protein lh1 alpha1 (7 kDa, Protein from Allochromatium tepidum)
- Magnesium ion (24 Da, Ligand)
- Bacteriochlorophyll a (911 Da, Ligand)
- Photosynthetic reaction center m subunit (36 kDa, Protein from Allochromatium tepidum)
- Photosynthetic lh1-rc complex from the purple phototrophic bacterium allochromatium tepidum (Complex from Allochromatium tepidum)
- Calcium ion (40 Da, Ligand)
- Palmitic acid (256 Da, Ligand)
- Menaquinone 8 (717 Da, Ligand)
- Bacteriopheophytin a (889 Da, Ligand)
- (1r)-2-{[{[(2s)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(palmitoyloxy)methyl]ethyl (11e)-octadec-11-enoate (749 Da, Ligand)
- Photosynthetic reaction center h subunit (28 kDa, Protein from Allochromatium tepidum)
- Ubiquinone-8 (727 Da, Ligand)
- Light-harvesting protein lh1 beta1 (5 kDa, Protein from Allochromatium tepidum)
- Heme c (618 Da, Ligand)
- Fe (iii) ion (55 Da, Ligand)
- Spirilloxanthin (596 Da, Ligand)
- Light-harvesting protein lh1 alpha3 (7 kDa, Protein from Allochromatium tepidum)
- Water (18 Da, Ligand)
- Photosynthetic reaction center l subunit (31 kDa, Protein from Allochromatium tepidum)
- Diacyl glycerol (625 Da, Ligand)
- Light-harvesting protein lh1 alpha2 (5 kDa, Protein from Allochromatium tepidum)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 7vsg
Q-score: 0.434
Nakanishi H, Hayashida K, Nishizawa T, Oshima A, Abe K
J Biol Chem (2022) 298 pp. 101498-101498 [ DOI: doi:10.1016/j.jbc.2021.101498 Pubmed: 34922944 ]
- Phospholipid-transporting atpase ig (124 kDa, Protein from Homo sapiens)
- Cell cycle control protein 50a (40 kDa, Protein from Homo sapiens)
- Cryo-em structure of a human atp11c-cdc50a flippase reconstituted in the nanodisc in ptdser-occluded e2-pi state. (Complex from Homo sapiens)
- O-[(s)-({(2r)-2,3-bis[(9z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-l-serine (788 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Cryo-EM structure of a human ATP11C-CDC50A flippase reconstituted in the Nanodisc in E1P state.
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7vsh
Q-score: 0.513
Nakanishi H, Hayashida K, Nishizawa T, Oshima A, Abe K
J Biol Chem (2022) 298 pp. 101498-101498 [ DOI: doi:10.1016/j.jbc.2021.101498 Pubmed: 34922944 ]
- Magnesium ion (24 Da, Ligand)
- Tetrafluoroaluminate ion (102 Da, Ligand)
- Cryo-em structure of a human atp11c-cdc50a flippase reconstituted in the nanodisc in e1p state. (Complex from Homo sapiens)
- Cell cycle control protein 50a (40 kDa, Protein from Homo sapiens)
- O-[(s)-({(2r)-2,3-bis[(9z)-octadec-9-enoyloxy]propyl}oxy)(hydroxy)phosphoryl]-l-serine (788 Da, Ligand)
- Phospholipid-transporting atpase ig (124 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)