Cryo-EM structure of human KCNQ4
Resolution: 2.5 Å
EM Method: Single-particle
Fitted PDBs: 7byl
Q-score: 0.326
Li T, Wu K, Yue Z, Wang Y, Zhang F, Shen H
Mol Cell (2021) 81 pp. 25- [ DOI: doi:10.1016/j.molcel.2020.10.037 Pubmed: 33238160 ]
- Water (18 Da, Ligand)
- Complex of human kcnq4 and calmodulin (Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Calmodulin-3 (16 kDa, Protein from Homo sapiens)
- [(2r)-1-octadecanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8z)-icosa-5,8,11,14-tetraenoate (1 kDa, Ligand)
- Green fluorescent protein,potassium voltage-gated channel subfamily kqt member 4 (109 kDa, Protein from Homo sapiens)
Cryo-EM structure of human KCNQ4 with retigabine
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7bym
Q-score: 0.297
Li T, Wu K, Yue Z, Wang Y, Zhang F, Shen H
Mol Cell (2021) 81 pp. 25- [ DOI: doi:10.1016/j.molcel.2020.10.037 Pubmed: 33238160 ]
- Ethyl n-[2-azanyl-4-[(4-fluorophenyl)methylamino]phenyl]carbamate (303 Da, Ligand)
- Water (18 Da, Ligand)
- Potassium ion (39 Da, Ligand)
- Calmodulin-3 (16 kDa, Protein from Homo sapiens)
- [(2r)-1-octadecanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8z)-icosa-5,8,11,14-tetraenoate (1 kDa, Ligand)
- Green fluorescent protein,potassium voltage-gated channel subfamily kqt member 4 (109 kDa, Protein from Homo sapiens)
- Complex of human kcnq4 and retigabine (Complex from Homo sapiens)
Cryo-EM structure of human KCNQ4 with linopirdine
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7byn
Q-score: 0.285
Li T, Wu K, Yue Z, Wang Y, Zhang F, Shen H
Mol Cell (2021) 81 pp. 25- [ DOI: doi:10.1016/j.molcel.2020.10.037 Pubmed: 33238160 ]
- Potassium ion (39 Da, Ligand)
- 1-phenyl-3,3-bis(pyridin-4-ylmethyl)indol-2-one (391 Da, Ligand)
- Complex of human kcnq4 and linopirdine (Complex from Homo sapiens)
- Calmodulin-3 (16 kDa, Protein from Homo sapiens)
- [(2r)-1-octadecanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phospho ryl]oxy-propan-2-yl] (8z)-icosa-5,8,11,14-tetraenoate (1 kDa, Ligand)
- Green fluorescent protein,potassium voltage-gated channel subfamily kqt member 4 (109 kDa, Protein from Homo sapiens)
The Vo region of human V-ATPase in state 1 (focused refinement)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 6wlw
Q-score: 0.579
Wang L, Wu D, Robinson CV, Wu H, Fu TM
Mol Cell (2020) 80 pp. 501- [ Pubmed: 33065002 DOI: doi:10.1016/j.molcel.2020.09.029 ]
- V-type proton atpase subunit d 1 (40 kDa, Protein from Homo sapiens)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Homo sapiens)
- (2~{s})-2-$l^{4}-azanyl-3-[[(2~{r})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid (497 Da, Ligand)
- Renin receptor (39 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit s1 (52 kDa, Protein from Homo sapiens)
- Ribonuclease kappa (15 kDa, Protein from Homo sapiens)
- Methyl (3r,6z,10e,14e)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate (534 Da, Ligand)
- Human v-atpase with sidk (Complex from Homo sapiens)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (9 kDa, Protein from Homo sapiens)
- Phosphatidylethanolamine (734 Da, Ligand)
- 1,2-dicaproyl-sn-phosphatidyl-l-serine (455 Da, Ligand)
- Cholesterol (386 Da, Ligand)
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Homo sapiens)
- Tri(methyl)-[2-[[(2~{r})-2-[(~{z})-octadec-9-enoyl]oxy-3-[(~{e})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium (787 Da, Ligand)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Human V-ATPase in state 1 with SidK and ADP
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6wm2
Q-score: 0.535
Wang L, Wu D, Robinson CV, Wu H, Fu TM
Mol Cell (2020) 80 pp. 501- [ Pubmed: 33065002 DOI: doi:10.1016/j.molcel.2020.09.029 ]
- V-type proton atpase subunit d 1 (40 kDa, Protein from Homo sapiens)
- V-type proton atpase 16 kda proteolipid subunit (15 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (26 kDa, Protein from Homo sapiens)
- Adenosine-5'-diphosphate (427 Da, Ligand)
- V-type proton atpase catalytic subunit a (68 kDa, Protein from Homo sapiens)
- 1,2-dicaproyl-sn-phosphatidyl-l-serine (455 Da, Ligand)
- V-type proton atpase 116 kda subunit a isoform 1 (96 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit g 1 (13 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit f (13 kDa, Protein from Homo sapiens)
- Human v-atpase in state 1 with sidk and adp (Complex from Homo sapiens)
- (2~{s})-2-$l^{4}-azanyl-3-[[(2~{r})-3-octadecanoyloxy-2-oxidanyl-propoxy]-oxidanyl-oxidanylidene-$l^{6}-phosphanyl]oxy-propanoic acid (497 Da, Ligand)
- V-type proton atpase subunit s1 (52 kDa, Protein from Homo sapiens)
- Phosphatidylethanolamine (734 Da, Ligand)
- Sidk (65 kDa, Protein from Legionella pneumophila)
- V-type proton atpase subunit d (28 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit b, brain isoform (56 kDa, Protein from Homo sapiens)
- Tri(methyl)-[2-[[(2~{r})-2-[(~{z})-octadec-9-enoyl]oxy-3-[(~{e})-1-oxidanylideneoctadec-9-enoxy]propoxy]-oxidanyl-phosphoryl]oxyethyl]azanium (787 Da, Ligand)
- Renin receptor (39 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit h (55 kDa, Protein from Homo sapiens)
- Ribonuclease kappa (15 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit e 1 (9 kDa, Protein from Homo sapiens)
- Cholesterol (386 Da, Ligand)
- Methyl (3r,6z,10e,14e)-3,7,11,15,19-pentamethylicosa-6,10,14,18-tetraen-1-yl dihydrogen diphosphate (534 Da, Ligand)
- V-type proton atpase 21 kda proteolipid subunit (21 kDa, Protein from Homo sapiens)
- V-type proton atpase subunit c 1 (43 kDa, Protein from Homo sapiens)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)