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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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EMD-45392

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High-resolution C. elegans 80S ribosome structure - class 1

Release date: Sept. 11, 2024
Resolution: 2.59 Å
EM Method: Single-particle
Fitted PDBs: 9cai
Q-score: 0.575

Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA

RNA (2024) 30 pp. 1513-1528 [ DOI: doi:10.1261/rna.080103.124 Pubmed: 39209556 ]

Sample:

Mrna (3 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
Trna (24 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
5s rrna (38 kDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
18s rrna (565 kDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
28s rrna (1 MDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
Spermidine (145 Da, Ligand)
Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
El41 (3 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)
Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)

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EMD-44533

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High resolution C. elegans 80S ribosome structure

Release date: Sept. 4, 2024
Resolution: 2.63 Å
EM Method: Single-particle
Fitted PDBs: 9bh5
Q-score: 0.517

Sehgal E, Wohlenberg C, Soukup EM, Viscardi MJ, Serrao VHB, Arribere JA

RNA (2024) 30 pp. 1513-1528 [ DOI: doi:10.1261/rna.080103.124 Pubmed: 39209556 ]

Sample:

Mrna (3 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein el27 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el21 (18 kDa, Protein from Caenorhabditis elegans)
Trna (24 kDa, RNA from Caenorhabditis elegans)
Large ribosomal subunit protein ul13 (23 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es19 (16 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el14 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el13 (23 kDa, Protein from Caenorhabditis elegans)
5s rrna (38 kDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein es12 (15 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el33 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul22 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el18 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el8 (30 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul5b (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es27 (9 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul18 (33 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us15 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el34 (12 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul30 (28 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es4 (29 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us3 (27 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es7 (22 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul4 (38 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es1 (29 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul6 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el20 (21 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el6 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul16 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el42 (12 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-like protein 1-ribosomal protein es31 fusion protein (18 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul15 (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us5 (29 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el19 (23 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el38 (8 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el36 (11 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el32 (15 kDa, Protein from Caenorhabditis elegans)
18s rrna (565 kDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein es17 (14 kDa, Protein from Caenorhabditis elegans)
Ribosomal protein l37 (10 kDa, Protein from Caenorhabditis elegans)
Ribosomal protein, small subunit (14 kDa, Protein from Caenorhabditis elegans)
28s rrna (1 MDa, RNA from Caenorhabditis elegans)
Small ribosomal subunit protein us11 (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es25 (12 kDa, Protein from Caenorhabditis elegans)
60s ribosomal protein l29 (7 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el15 (24 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el43 (10 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us19 (17 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us14 (6 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es24 (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el39 (6 kDa, Protein from Caenorhabditis elegans)
5.8s rrna (49 kDa, RNA from Caenorhabditis elegans)
4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
Small ribosomal subunit protein us9 (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es8 (23 kDa, Protein from Caenorhabditis elegans)
Spermidine (145 Da, Ligand)
Caenorhabditis elegans 80s ribosome (Complex from Caenorhabditis elegans)
Small ribosomal subunit protein us4 (22 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us12 (15 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us17 (17 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul3 (45 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us10 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul2 (28 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us13 (17 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es6 (28 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el22 (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul24 (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us2 (30 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el31 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein us7 (23 kDa, Protein from Caenorhabditis elegans)
El41 (3 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es21 (9 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul14 (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul23b (16 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es26 (13 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el24 (17 kDa, Protein from Caenorhabditis elegans)
Plectin/s10 n-terminal domain-containing protein (16 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-like domain-containing protein (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein ul29 (14 kDa, Protein from Caenorhabditis elegans)
Small ribosomal subunit protein es28 (7 kDa, Protein from Caenorhabditis elegans)
Ubiquitin-ribosomal protein el40 fusion protein (14 kDa, Protein from Caenorhabditis elegans)
Large ribosomal subunit protein el30 (12 kDa, Protein from Caenorhabditis elegans)

[Show more]

EMD-40973

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AP2 bound to MSP2N2 nanodisc with Tgn38 cargo peptide; composite map

Release date: July 12, 2023
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8t1o
Q-score: 0.468

S Cannon K, Sarsam RD, Tedamrongwanish T, Zhang K, Baker RW

J Struct Biol (2023) 215 pp. 107989-107989 [ Pubmed: 37364761 DOI: doi:10.1016/j.jsb.2023.107989 ]

Sample:

Ap-2 complex subunit sigma (17 kDa, Protein from Mus musculus)
Ap-2 complex subunit beta (66 kDa, Protein from Mus musculus)
Trans-golgi network integral membrane protein tgn38 (1 kDa, Protein from Rattus norvegicus)
Ap-2 complex subunit alpha-2 (70 kDa, Protein from Mus musculus)
Ap2 bound to msp2n2 nanodisc with tgn38 cargo peptide (200 kDa, Complex from Mus musculus)
[(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
Ap-2 complex subunit mu (49 kDa, Protein from Mus musculus)

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EMD-15026

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Avidin + Biotin-Tempo

Release date: June 14, 2023
Resolution: 2.08 Å
EM Method: Single-particle
Fitted PDBs: 7zyl
Q-score: 0.675

Milani J, Myasnikov A, Beckert B, Nazarov S, Ansermet JP, Saenz F

To Be Published

Sample:

Avidin (100 kDa, Complex from Gallus gallus)
6-[(3~{a}~{s},4~{s},6~{a}~{r})-2-oxidanylidene-1,3,3~{a},4,6,6~{a}-hexahydrothieno[3,4-d]imidazol-4-yl]-~{n}-(2,2,6,6-tetramethyl-1-oxidanyl-piperidin-4-yl)hexanamide (412 Da, Ligand)
Avidin (16 kDa, Protein from Gallus gallus)

EMD-26943

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Consensus refinement of human erythrocyte ankyrin-1 complex (Composite map)

Release date: July 20, 2022
Resolution: 2.4 Å
EM Method: Single-particle
Fitted PDBs: 7v0k
Q-score: 0.703

Vallese F, Kim K, Yen LY, Johnston JD, Noble AJ, Cali T, Clarke OB

Nat Struct Mol Biol (2022) 29 pp. 706-718 [ DOI: doi:10.1038/s41594-022-00792-w Pubmed: 35835865 ]

Sample:

Protein 4.2 (77 kDa, Protein from Homo sapiens)
Ankyrin-1 (206 kDa, Protein from Homo sapiens)
Water (18 Da, Ligand)
Band 3 anion exchanger complexed with glycophorin a, in outward facing state (Complex from Homo sapiens)
Band 3 anion transport protein (101 kDa, Protein from Homo sapiens)
[(2r)-2-octanoyloxy-3-[oxidanyl-[(1r,2r,3s,4r,5r,6s)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate (746 Da, Ligand)
Digitonin (1 kDa, Ligand)
Glycophorin-a (16 kDa, Protein from Homo sapiens)
Cholesterol (386 Da, Ligand)
Ammonium transporter rh type a (44 kDa, Protein from Homo sapiens)
2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
Blood group rh(ce) polypeptide (45 kDa, Protein from Homo sapiens)
Diundecyl phosphatidyl choline (622 Da, Ligand)

[Show more]

Sort by: Download

Showing 1 - 5 of 5. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [5]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

Field: