Structure of wild type human PSS1
Long T, Li D, Vale G, Jiang Y, Schmiege P, Yang ZJ, McDonald JG, Li X
Cell (2024) 187 pp. 5665-5678.e18 [ Pubmed: 39208797 DOI: doi:10.1016/j.cell.2024.08.004 ]
- [(2~{r})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{z})-octadec-9-enoate (717 Da, Ligand)
- Water (18 Da, Ligand)
- (2r)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dihexadecanoate (811 Da, Ligand)
- 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (760 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- Phosphatidylserine synthase 1 (48 kDa, Protein from Homo sapiens)
- Pss1 (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
Structure of inhibitor-bound human PSS1
Long T, Li D, Vale G, Jiang Y, Schmiege P, Yang ZJ, McDonald JG, Li X
Cell (2024) 187 pp. 5665-5678.e18 [ Pubmed: 39208797 DOI: doi:10.1016/j.cell.2024.08.004 ]
- [(2~{r})-1-[2-azanylethoxy(oxidanyl)phosphoryl]oxy-3-hexadecanoyloxy-propan-2-yl] (~{z})-octadec-9-enoate (717 Da, Ligand)
- Water (18 Da, Ligand)
- Inhibitor-bound human pss1 (Complex from Homo sapiens)
- (7p)-7-[(4s)-4-{4-[3,5-bis(trifluoromethyl)phenoxy]phenyl}-5-(2,2-difluoropropyl)-6-oxo-1,4,5,6-tetrahydropyrrolo[3,4-c]pyrazol-3-yl]-1,3-benzoxazol-2(3h)-one (638 Da, Ligand)
- (2r)-3-{[(s)-hydroxy{[(1r,2r,3r,4r,5r,6s)-2,3,4,5,6-pentahydroxycyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dihexadecanoate (811 Da, Ligand)
- O-[(r)-{[(2r)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-l-serine (792 Da, Ligand)
- 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine (760 Da, Ligand)
- Phosphatidylserine synthase 1 (48 kDa, Protein from Homo sapiens)
- Calcium ion (40 Da, Ligand)
Structure of PKA phosphorylated human RyR2-R420Q in the primed state
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8uxc
Q-score: 0.466
Miotto MC, Reiken S, Wronska A, Yuan Q, Dridi H, Liu Y, Weninger G, Tchagou C, Marks AR
Nat Commun (2024) 15 pp. 8080-8080 [ DOI: doi:10.1038/s41467-024-51791-y Pubmed: 39278969 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ryanodine receptor 2 (Complex from Homo sapiens)
- Ryanodine receptor 2 (565 kDa, Protein from Homo sapiens)
- Peptidyl- cis-trans isomerase fkbp1b (Complex from Homo sapiens)
- Complex of ryr2-r420q and calstabin-2 (Complex)
Structure of PKA phosphorylated human RyR2-R420Q in the closed state in the presence of ARM210
Resolution: 3.53 Å
EM Method: Single-particle
Fitted PDBs: 8uxe
Q-score: 0.391
Miotto MC, Reiken S, Wronska A, Yuan Q, Dridi H, Liu Y, Weninger G, Tchagou C, Marks AR
Nat Commun (2024) 15 pp. 8080-8080 [ DOI: doi:10.1038/s41467-024-51791-y Pubmed: 39278969 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Ryanodine receptor 2 (Complex from Homo sapiens)
- Ryanodine receptor 2 (565 kDa, Protein from Homo sapiens)
- Peptidyl- cis-trans isomerase fkbp1b (Complex from Homo sapiens)
- Complex of ryr2-r420q and calstabin-2 in the presence of arm210 (Complex)
- 4-[(7-methoxy-2,3-dihydro-1,4-benzothiazepin-4(5h)-yl)methyl]benzoic acid (329 Da, Ligand)
Structure of PKA phosphorylated human RyR2-R420W in the primed state
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8uxf
Q-score: 0.454
Miotto MC, Reiken S, Wronska A, Yuan Q, Dridi H, Liu Y, Weninger G, Tchagou C, Marks AR
Nat Commun (2024) 15 pp. 8080-8080 [ DOI: doi:10.1038/s41467-024-51791-y Pubmed: 39278969 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ryanodine receptor 2 (565 kDa, Protein from Homo sapiens)
- Complex of ryr2-r420w and calstabin-2 (Complex)
- Zinc ion (65 Da, Ligand)
- Ryanodine receptor 2 (Complex from Homo sapiens)
- Peptidyl- cis-trans isomerase fkbp1b (Complex from Homo sapiens)
Structure of PKA phosphorylated human RyR2-R420W in the closed state in the presence of ARM210
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 8uxg
Q-score: 0.434
Miotto MC, Reiken S, Wronska A, Yuan Q, Dridi H, Liu Y, Weninger G, Tchagou C, Marks AR
Nat Commun (2024) 15 pp. 8080-8080 [ DOI: doi:10.1038/s41467-024-51791-y Pubmed: 39278969 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ryanodine receptor 2 (565 kDa, Protein from Homo sapiens)
- Complex of ryr2-r420w and calstabin-2 (Complex)
- Zinc ion (65 Da, Ligand)
- Ryanodine receptor 2 (Complex from Homo sapiens)
- Peptidyl- cis-trans isomerase fkbp1b (Complex from Homo sapiens)
- 4-[(7-methoxy-2,3-dihydro-1,4-benzothiazepin-4(5h)-yl)methyl]benzoic acid (329 Da, Ligand)
Structure of PKA phosphorylated human RyR2-R420W in the primed state in the presence of calcium
Resolution: 3.52 Å
EM Method: Single-particle
Fitted PDBs: 8uxh
Q-score: 0.366
Miotto MC, Reiken S, Wronska A, Yuan Q, Dridi H, Liu Y, Weninger G, Tchagou C, Marks AR
Nat Commun (2024) 15 pp. 8080-8080 [ DOI: doi:10.1038/s41467-024-51791-y Pubmed: 39278969 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ryanodine receptor 2 (565 kDa, Protein from Homo sapiens)
- Complex of ryr2-r420w and calstabin-2 (Complex)
- Zinc ion (65 Da, Ligand)
- Ryanodine receptor 2 (Complex from Homo sapiens)
- Peptidyl- cis-trans isomerase fkbp1b (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
Structure of PKA phosphorylated human RyR2-R420W in the open state in the presence of calcium
Resolution: 3.29 Å
EM Method: Single-particle
Fitted PDBs: 8uxi
Q-score: 0.39
Miotto MC, Reiken S, Wronska A, Yuan Q, Dridi H, Liu Y, Weninger G, Tchagou C, Marks AR
Nat Commun (2024) 15 pp. 8080-8080 [ DOI: doi:10.1038/s41467-024-51791-y Pubmed: 39278969 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ryanodine receptor 2 (565 kDa, Protein from Homo sapiens)
- Complex of ryr2-r420w and calstabin-2 (Complex)
- Zinc ion (65 Da, Ligand)
- Ryanodine receptor 2 (Complex from Homo sapiens)
- Peptidyl- cis-trans isomerase fkbp1b (Complex from Homo sapiens)
- Calcium ion (40 Da, Ligand)
Resolution: 3.12 Å
EM Method: Single-particle
Fitted PDBs: 8uxl
Q-score: 0.417
Miotto MC, Reiken S, Wronska A, Yuan Q, Dridi H, Liu Y, Weninger G, Tchagou C, Marks AR
Nat Commun (2024) 15 pp. 8080-8080 [ DOI: doi:10.1038/s41467-024-51791-y Pubmed: 39278969 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ryanodine receptor 2 (565 kDa, Protein from Homo sapiens)
- Calmodulin (Complex from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ryanodine receptor 2 (Complex from Homo sapiens)
- Peptidyl- cis-trans isomerase fkbp1b (Complex from Homo sapiens)
- Complex of ryr2-r420w, calstabin-2, and calmodulin (Complex)
- Calcium ion (40 Da, Ligand)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)
Resolution: 3.56 Å
EM Method: Single-particle
Fitted PDBs: 8uxm
Q-score: 0.381
Miotto MC, Reiken S, Wronska A, Yuan Q, Dridi H, Liu Y, Weninger G, Tchagou C, Marks AR
Nat Commun (2024) 15 pp. 8080-8080 [ DOI: doi:10.1038/s41467-024-51791-y Pubmed: 39278969 ]
- Peptidyl-prolyl cis-trans isomerase fkbp1b (11 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Calmodulin (Complex from Homo sapiens)
- Ryanodine receptor 2 (565 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Ryanodine receptor 2 (Complex from Homo sapiens)
- Peptidyl- cis-trans isomerase fkbp1b (Complex from Homo sapiens)
- Complex of ryr2-r420w, calstabin-2, and calmodulin (Complex)
- Calcium ion (40 Da, Ligand)
- Calmodulin-1 (16 kDa, Protein from Homo sapiens)