Structure of Cas7-11-crRNA in complex with TPR-CHAT
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7y8t
Q-score: 0.567
Wang S, Guo M, Zhu Y, Lin Z, Huang Z
Cell Res (2022) 32 pp. 1128-1131 [ Pubmed: 36280712 DOI: doi:10.1038/s41422-022-00738-3 ]
- Rna (Complex)
- Zinc ion (65 Da, Ligand)
- Tpr-chat (Complex from Candidatus Scalindua brodae)
- Rna (37-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Type iii-e crispr-cas effector (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Structure of Cas7-11-crRNA-tgRNA in complex with TPR-CHAT
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7y8y
Q-score: 0.51
Wang S, Guo M, Zhu Y, Lin Z, Huang Z
Cell Res (2022) 32 pp. 1128-1131 [ Pubmed: 36280712 DOI: doi:10.1038/s41422-022-00738-3 ]
- Rna (Complex)
- Zinc ion (65 Da, Ligand)
- Tpr-chat (Complex from Candidatus Scalindua brodae)
- Rna (37-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Rna (5'-r(p*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*c)-3') (5 kDa, RNA from Candidatus Scalindua brodae)
- Type iii-e crispr-cas effector (Complex)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8d97
Q-score: 0.407
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Rna (42-mer) (13 kDa, RNA from Candidatus Scalindua brodae)
- Apo gramp (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (184 kDa, Protein from Candidatus Scalindua brodae)
Resolution: 3.76 Å
EM Method: Single-particle
Fitted PDBs: 8d9e
Q-score: 0.416
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*up*a)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-match pfs target (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (143 kDa, Protein from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
Resolution: 2.71 Å
EM Method: Single-particle
Fitted PDBs: 8d9f
Q-score: 0.512
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Ramp superfamily protein (142 kDa, Protein from Candidatus Scalindua brodae)
- Chat domain protein (77 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-tpr-chat craspase (Complex from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
gRAMP-TPR-CHAT Non match PFS target RNA(Craspase)
Resolution: 2.57 Å
EM Method: Single-particle
Fitted PDBs: 8d9g
Q-score: 0.547
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Zinc ion (65 Da, Ligand)
- Chat domain protein (78 kDa, Protein from Candidatus Scalindua brodae)
- Gramp-tpr-chat with non match pfs target rna craspase (Complex from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (147 kDa, Protein from Candidatus Scalindua brodae)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*ap*cp*gp*ap*u)-3') (7 kDa, RNA from Candidatus Scalindua brodae)
gRAMP-TPR-CHAT match PFS target RNA(Craspase)
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 8d9h
Q-score: 0.426
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Chat domain protein (76 kDa, Protein from Candidatus Scalindua brodae)
- Phosphate ion (94 Da, Ligand)
- Ramp superfamily protein (145 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*u)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-tpr-chat with match pfs target rna craspase (Complex from Candidatus Scalindua brodae)
- Rna (36-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
gRAMP non-matching PFS-with Mg
Resolution: 3.62 Å
EM Method: Single-particle
Fitted PDBs: 8d9i
Q-score: 0.423
Hu C, van Beljouw SPB, Nam KH, Schuler G, Ding F, Cui Y, Rodriguez-Molina A, Haagsma AC, Valk M, Pabst M, Brouns SJJ, Ke A
Science (2022) 377 pp. 1278-1285 [ Pubmed: 36007061 DOI: doi:10.1126/science.add5064 ]
- Rna (35-mer) (11 kDa, RNA from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (5'-r(p*up*cp*cp*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*a)-3') (6 kDa, RNA from Candidatus Scalindua brodae)
- Gramp-non matching pfs-with mg (Complex from Candidatus Scalindua brodae)
- Ramp superfamily protein (143 kDa, Protein from Candidatus Scalindua brodae)
Structure of the type III-E CRISPR-Cas effector gRAMP
Resolution: 3.01 Å
EM Method: Single-particle
Fitted PDBs: 7xso
Q-score: 0.553
Liu X, Zhang L, Wang H, Xiu Y, Huang L, Gao Z, Li N, Li F, Xiong W, Gao T, Zhang Y, Yang M, Feng Y
Mol Cell (2022) 82 pp. 4503-4518.e8 [ DOI: doi:10.1016/j.molcel.2022.10.007 Pubmed: 36306795 ]
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Gramp (Complex from Candidatus Scalindua brodae)
- Rna (35-mer) (23 kDa, RNA from Candidatus Scalindua brodae)
Structure of the SbCas7-11-crRNA-NTR complex
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8gna
Q-score: 0.544
Wang X, Yu G, Wen Y, An Q, Li X, Liao F, Lian C, Zhang K, Yin H, Wei Y, Deng Z, Zhang H
Nucleic Acids Res (2022) 50 pp. 12913-12923 [ DOI: doi:10.1093/nar/gkac1151 Pubmed: 36484100 ]
- Rna (5'-r(p*gp*gp*gp*gp*cp*ap*gp*ap*ap*ap*ap*up*up*gp*gp*gp*u)-3') (14 kDa, RNA from Candidatus Scalindua brodae)
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (32-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Ternary complex (Complex from Candidatus Scalindua brodae)