cryoEM structure of SPARTA complex dimer-3
Resolution: 3.89 Å
EM Method: Single-particle
Fitted PDBs: 8ozd
Q-score: 0.302
Ni D, Lu X, Stahlberg H, Ekundayo B
Sci Adv (2023) 9 pp. eadh9002-eadh9002 [ DOI: doi:10.1126/sciadv.adh9002 Pubmed: 37467330 ]
- Dna (16-mer) (4 kDa, DNA from Maribacter polysiphoniae)
- Tir domain-containing protein (53 kDa, Protein from Maribacter polysiphoniae)
- Piwi domain-containing protein (58 kDa, Protein from Maribacter polysiphoniae)
- A prokaryotic argonaute-tir abortive immunity system (350 kDa, Complex from Maribacter polysiphoniae)
- Rna (18-mer) (5 kDa, RNA from Maribacter polysiphoniae)
CryoEM Structure of E. coli Transcription-Coupled Ribonucleotide Excision Repair (TC-RER) complex
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7uwe
Q-score: 0.413
Hao Z, Gowder M, Proshkin S, Bharati BK, Epshtein V, Svetlov V, Shamovsky I, Nudler E
Cell (2023) 186 pp. 2425- [ DOI: doi:10.1016/j.cell.2023.04.029 Pubmed: 37196657 ]
- Rna (18-mer) (5 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna (29-mer) (8 kDa, DNA from Escherichia coli)
- Dna (29-mer) (8 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Elongation complex(ec)-rnaseh2 complex (Complex from Escherichia coli)
- Ribonuclease hii (21 kDa, Protein from Escherichia coli)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7uwh
Q-score: 0.458
Hao Z, Gowder M, Proshkin S, Bharati BK, Epshtein V, Svetlov V, Shamovsky I, Nudler E
Cell (2023) 186 pp. 2425- [ DOI: doi:10.1016/j.cell.2023.04.029 Pubmed: 37196657 ]
- Dna-directed rna polymerase subunit beta' (155 kDa, Protein from Escherichia coli)
- Rna (18-mer) (5 kDa, RNA from Escherichia coli)
- Ribonuclease hii (21 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Elongation complex(ec)-rnaseh2 complex bound to ribonucleotide substrate (Complex from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna (59-mer) (18 kDa, DNA from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna/rna (59-mer) (18 kDa, Macromolecule from Escherichia coli)
Golden Shiner Reovirus Core Polar Vertex
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 8fjk
Q-score: 0.467
Stevens A, Cui Y, Shivakoti S, Zhou ZH
Protein Cell (2023) 14 pp. 544-548 [ Pubmed: 36856784 DOI: doi:10.1093/procel/pwad002 ]
- Golden shiner reovirus (47 MDa, Virus from Golden shiner reovirus)
- Rna (30-mer) (9 kDa, RNA from Golden shiner reovirus)
- Zinc ion (65 Da, Ligand)
- Major inner capsid protein vp3 (124 kDa, Protein from Golden shiner reovirus)
- Rna-directed rna polymerase vp2 (141 kDa, Protein from Golden shiner reovirus)
- Rna (18-mer) (5 kDa, RNA from Golden shiner reovirus)
- Major inner capsid protein vp3 (9 kDa, Protein from Golden shiner reovirus)
- Rna (52-mer) (16 kDa, RNA from Golden shiner reovirus)
- Rna (60-mer) (19 kDa, RNA from Golden shiner reovirus)
- Rna (40-mer) (12 kDa, RNA from Golden shiner reovirus)
- Outer capsid protein vp1 (141 kDa, Protein from Golden shiner reovirus)
- Rna (38-mer) (12 kDa, RNA from Golden shiner reovirus)
- Microtubule-associated protein vp5 (79 kDa, Protein from Golden shiner reovirus)
- Clamp protein vp6 (44 kDa, Protein from Golden shiner reovirus)
CryoEM Structure of E. coli Rho-dependent Transcription Pre-termination Complex bound with NusG
Resolution: 7.7 Å
EM Method: Single-particle
Fitted PDBs: 6xav
Q-score: 0.103
Hao Z, Epshtein V, Kim KH, Proshkin S, Svetlov V, Kamarthapu V, Bharati B, Mironov A, Walz T, Nudler E
Mol Cell (2021) 81 pp. 281- [ DOI: doi:10.1016/j.molcel.2020.11.013 Pubmed: 33296676 ]
- Transcription termination/antitermination protein nusa (54 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli K-12)
- Rna (18-mer) (5 kDa, RNA from Escherichia coli K-12)
- Transcription termination/antitermination protein nusg (20 kDa, Protein from Escherichia coli K-12)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerase subunit beta' (156 kDa, Protein from Escherichia coli K-12)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli K-12)
- Transcription termination factor rho (47 kDa, Protein from Escherichia coli K-12)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli K-12)
- E. coli rho-dependent transcription pre-termination complex (726 kDa, Complex from Escherichia coli (strain K12))
- Dna (29-mer) (8 kDa, DNA from Escherichia coli K-12)
- Dna (29-mer) (9 kDa, DNA from Escherichia coli K-12)