Cryo-EM structure of CTR-bound type VII CRISPR-Cas complex at post-state II
Resolution: 3.07 Å
EM Method: Single-particle
Fitted PDBs: 8yhe
Q-score: 0.506
Yang J, Li X, He Q, Wang X, Tang J, Wang T, Zhang Y, Yu F, Zhang S, Liu Z, Zhang L, Liao F, Yin H, Zhao H, Deng Z, Zhang H
Nature (2024) 633 pp. 465-472 [ Pubmed: 39143216 DOI: doi:10.1038/s41586-024-07815-0 ]
- Rna (29-mer) (16 kDa, RNA from metagenome)
- Protein structure (70 kDa, Protein from metagenome)
- Zinc ion (65 Da, Ligand)
- Protein structure (27 kDa, Protein from metagenome)
- Rna (46-mer) (15 kDa, RNA from metagenome)
- Protein structure (22 kDa, Protein from metagenome)
- Protein structure (Complex from metagenome)
type I-C Cascade bound to ssDNA target
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 8dfa
Q-score: 0.48
O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW
Mol Cell (2023) 83 pp. 746- [ DOI: doi:10.1016/j.molcel.2023.01.024 Pubmed: 36805026 ]
- Type i-c cascade bound to ssdna (Complex from Desulfovibrio vulgaris str. Hildenborough)
- Crispr-associated protein, ct1133 family (14 kDa, Protein from Desulfovibrio vulgaris str. Hildenborough)
- Pre-crrna processing endonuclease (25 kDa, Protein from Desulfovibrio vulgaris str. Hildenborough)
- Crispr-associated protein, ct1133 family (68 kDa, Protein from Desulfovibrio vulgaris str. Hildenborough)
- Crispr-associated protein, tm1801 family (32 kDa, Protein from Desulfovibrio vulgaris str. Hildenborough)
- Rna (46-mer) (14 kDa, RNA from Desulfovibrio vulgaris)
- Ts (5 kDa, Macromolecule from Desulfovibrio vulgaris)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7wv5
Q-score: 0.496
Lim CS, Jang YH, Lee GY, Han GM, Jeong HJ, Kim JW, Lee JO
Nat Commun (2022) 13 pp. 6876-6876 [ Pubmed: 36371424 DOI: doi:10.1038/s41467-022-34602-0 ]
- Ectotlr3 (Complex from Homo sapiens)
- Rna (46-mer) (13 kDa, RNA from synthetic construct)
- Toll-like receptor 3 (78 kDa, Protein from Homo sapiens)
- Ectotlr3-poly(i:c) complex (Complex)
- Rna (46-mer) (15 kDa, RNA from synthetic construct)
- Poly(i:c) (Complex)
- 2-acetamido-2-deoxy-beta-d-glucopyranose (221 Da, Ligand)
CT-mut (D523K,D524K,E527K) TLR3-poly(I:C) complex
Resolution: 3.11 Å
EM Method: Single-particle
Fitted PDBs: 7wve
Q-score: 0.447
Lim CS, Jang YH, Lee GY, Han GM, Jeong HJ, Kim JW, Lee JO
Nat Commun (2022) 13 pp. 6876-6876 [ Pubmed: 36371424 DOI: doi:10.1038/s41467-022-34602-0 ]
- Rna (46-mer) (13 kDa, RNA from synthetic construct)
- Ct-mut(d523k,d524k,e527k) tlr3 ectodomain (Complex from Homo sapiens)
- Toll-like receptor 3 (77 kDa, Protein from Homo sapiens)
- Rna (46-mer) (15 kDa, RNA from synthetic construct)
- Poly(i:c) (Complex)
- Ct-mut(d523k,d524k,e527k) tlr3 ectodomain-poly i:c complex (Complex)
ectoTLR3-mAb12-poly(I:C) complex
Resolution: 3.91 Å
EM Method: Single-particle
Fitted PDBs: 7wvf
Q-score: 0.31
Lim CS, Jang YH, Lee GY, Han GM, Jeong HJ, Kim JW, Lee JO
Nat Commun (2022) 13 pp. 6876-6876 [ Pubmed: 36371424 DOI: doi:10.1038/s41467-022-34602-0 ]
- Rna (46-mer) (13 kDa, RNA from synthetic construct)
- Toll-like receptor 3 (78 kDa, Protein from Homo sapiens)
- Ectotlr3-mab12-poly(i:c) complex (Complex)
- Ectotlr3-mab12 (Complex from Homo sapiens)
- Rna (46-mer) (15 kDa, RNA from synthetic construct)
- Mab12 (27 kDa, Protein from Homo sapiens)
- Poly(i:c) (Complex)
NT-mut(K117D,K139D,K145D) TLR3 -poly I:C complex
Resolution: 3.26 Å
EM Method: Single-particle
Fitted PDBs: 7wvj
Q-score: 0.389
Lim CS, Jang YH, Lee GY, Han GM, Jeong HJ, Kim JW, Lee JO
Nat Commun (2022) 13 pp. 6876-6876 [ Pubmed: 36371424 DOI: doi:10.1038/s41467-022-34602-0 ]
- Rna (46-mer) (13 kDa, RNA from synthetic construct)
- Toll-like receptor 3 (78 kDa, Protein from Homo sapiens)
- Poly(i:c) (Complex)
- Nt-mut(k117d,k139d,k145d) tlr3 ectodomain (Complex from Homo sapiens)
- Rna (46-mer) (15 kDa, RNA from synthetic construct)
- Nt-mut(k117d,k139d,k145d) tlr3 ectodomain-poly i:c complex (Complex)
Cryo-EM structure of a bacterial protein complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7xc7
Q-score: 0.423
Yu G, Wang X, Zhang Y, An Q, Wen Y, Li X, Yin H, Deng Z, Zhang H
Nat Microbiol (2022) 7 pp. 2078-2088 [ DOI: doi:10.1038/s41564-022-01256-z Pubmed: 36302881 ]
- Ramp superfamily protein (197 kDa, Protein from Candidatus Scalindua brodae)
- Quaternary complex (Complex from Candidatus Scalindua brodae)
- Rna (33-mer) (10 kDa, RNA from Candidatus Scalindua brodae)
- Chat domain protein (82 kDa, Protein from Candidatus Scalindua brodae)
- Zinc ion (65 Da, Ligand)
- Rna (46-mer) (14 kDa, RNA from Candidatus Scalindua brodae)
Human Nuclear exosome targeting (NEXT) complex homodimer bound to RNA (substrate 1)
Resolution: 4.06 Å
EM Method: Single-particle
Fitted PDBs: 7s7b
Q-score: 0.444
Cell (2022) 185 pp. 2132-2147.e26 [ DOI: doi:10.1016/j.cell.2022.04.016 Pubmed: 35688134 ]
- Zinc finger cchc domain-containing protein 8,zinc finger cchc domain-containing protein 8 (69 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- Rna-binding protein 7 (9 kDa, Protein from Homo sapiens)
- Rna (46-mer) (14 kDa, RNA from synthetic construct)
- Exosome rna helicase mtr4 (118 kDa, Protein from Homo sapiens)
- Human nuclear exosome targeting (next)-rna substrate 1 complex (Complex from Homo sapiens)
Cryo-EM structure of the Type III-B Cmr-beta bound to cognate target RNA and AMPPnP, state 1
Resolution: 2.41 Å
EM Method: Single-particle
Fitted PDBs: 6s8b
Q-score: 0.48
Sofos N, Feng M, Stella S, Pape T, Fuglsang A, Lin J, Huang Q, Li Y, She Q, Montoya G
Mol Cell (2020) 79 pp. 741-757.e7 [ DOI: doi:10.1016/j.molcel.2020.07.008 Pubmed: 32730741 ]
- Crispr-associated protein, cmr3 family (36 kDa, Protein from Sulfolobus islandicus (strain REY15A))
- Phosphoaminophosphonic acid-adenylate ester (506 Da, Ligand)
- Crispr-associated ramp protein, cmr6 family (33 kDa, Protein from Sulfolobus islandicus (strain REY15A))
- Cmr1 (55 kDa, Protein from Sulfolobus islandicus REY15A)
- Cognate target rna (46-mer) (14 kDa, RNA from Sulfolobus islandicus REY15A)
- Crispr-associated ramp protein, cmr4 family (32 kDa, Protein from Sulfolobus islandicus (strain REY15A))
- Crispr-associated protein cmrx (19 kDa, Protein from Sulfolobus islandicus (strain REY15A))
- Crispr-associated protein, cmr2 family (120 kDa, Protein from Sulfolobus islandicus (strain REY15A))
- Manganese (ii) ion (54 Da, Ligand)
- Crispr-associated protein, cmr5 family (17 kDa, Protein from Sulfolobus islandicus (strain REY15A))
- Type iii-b cmr-beta ternary complex, cognate target rna and amppnp bound (900 kDa, Complex from Sulfolobus islandicus REY15A)
- Zinc ion (65 Da, Ligand)
- Crrna (16 kDa, RNA from Sulfolobus islandicus REY15A)