Structure of s. pombe RNA polymerase II in complex with DSIF and Rat1/Rai1
Resolution: 2.67 Å
EM Method: Single-particle
Fitted PDBs: 8qsz
Q-score: 0.539
Kus K, Carrique L, Kecman T, Fournier M, Hassanein SS, Aydin E, Kilchert C, Grimes JM, Vasiljeva L
Nat Commun (2025) 16 pp. 10-10 [ DOI: doi:10.1038/s41467-024-55063-7 Pubmed: 39746995 ]
- Dna-directed rna polymerase ii subunit rpb9,rbp9 (16 kDa, Protein from Schizosaccharomyces pombe)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc5 (8 kDa, Protein from Schizosaccharomyces pombe)
- Dna-directed rna polymerase ii subunit rpb7 (19 kDa, Protein from Schizosaccharomyces pombe)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc4 (7 kDa, Protein from Schizosaccharomyces pombe)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc3 (14 kDa, Protein from Schizosaccharomyces pombe)
- Dna-directed rna polymerase ii subunit rpb11 (14 kDa, Protein from Schizosaccharomyces pombe)
- Rna (5'-r(p*ap*up*cp*gp*ap*gp*ap*gp*gp*u)-3') (8 kDa, RNA from Schizosaccharomyces pombe)
- 5'-3' exoribonuclease 2 (102 kDa, Protein from Schizosaccharomyces pombe)
- Dna none template (34-mer) (14 kDa, DNA from Schizosaccharomyces pombe)
- Dna-directed rna polymerase ii subunit rpb1 (194 kDa, Protein from Schizosaccharomyces pombe)
- Transcription elongation factor spt5 (123 kDa, Protein from Schizosaccharomyces pombe)
- Dna-directed rna polymerase ii subunit rpb3 (33 kDa, Protein from Schizosaccharomyces pombe)
- S. pombe rna polymerase ii in complex with dsif and rat1/rai1 (Complex from Schizosaccharomyces pombe)
- Zinc ion (65 Da, Ligand)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc1 (23 kDa, Protein from Schizosaccharomyces pombe)
- Dna template (40-mer) (14 kDa, DNA from Schizosaccharomyces pombe)
- Dna-directed rna polymerase ii subunit rpb2 (138 kDa, Protein from Schizosaccharomyces pombe)
- Dna-directed rna polymerases i, ii, and iii subunit rpabc2 (15 kDa, Protein from Schizosaccharomyces pombe)
Cryo-EM map of the Mediator-RNAPII complex
Resolution: 7.8 Å
EM Method: Single-particle
Fitted PDBs: 5u0s
Q-score: 0.123
Tsai KL, Yu X, Gopalan S, Chao TC, Zhang Y, Florens L, Washburn MP, Murakami K, Conaway RC, Conaway JW, Asturias FJ
Nature (2017) 544 pp. 196-201 [ Pubmed: 28241144 DOI: doi:10.1038/nature21393 ]
- Mediator complex subunit 17 (62 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb1 (194 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 11 (13 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 8 (23 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 4 (20 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 20 (22 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 7 (43 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb10 (8 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 22 (15 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 21 (15 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 18 (24 kDa, Protein from Schizosaccharomyces pombe)
- Complex of mediator and rnapii (1 MDa, Complex from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb11 (14 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 14 (105 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb12 (7 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb5 (23 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 19 (11 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 9 (13 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 10 (11 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb6 (15 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb2 (138 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb9 (13 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb3 (33 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb4 (15 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 31 (16 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb8 (14 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 6 (24 kDa, Protein from Schizosaccharomyces pombe)
- Rna polymerase ii subunit rpb7 (19 kDa, Protein from Schizosaccharomyces pombe)
- Mediator complex subunit 27 (31 kDa, Protein from Schizosaccharomyces pombe)