LSU structure derived from the LSU sample of the mitoribosome from T. gondii.
Resolution: 2.89 Å
EM Method: Single-particle
Fitted PDBs: 9g6k
Q-score: 0.482
Wang C, Kassem S, Rocha REO, Sun P, Nguyen TT, Kloehn J, Liu X, Brusini L, Bonavoglia A, Barua S, Boissier F, Lucia Del Cistia M, Peng H, Tang X, Xie F, Wang Z, Vadas O, Suo X, Hashem Y, Soldati-Favre D, Jia Y
Nat Commun (2024) 15 pp. 10689-10689 [ DOI: doi:10.1038/s41467-024-55033-z Pubmed: 39690155 ]
- Large ribosomal subunit protein ml43 (22 kDa, Protein from Toxoplasma gondii)
- Ml175 (8 kDa, Protein from Toxoplasma gondii)
- Bir protein (26 kDa, Protein from Toxoplasma gondii)
- Rna23t (14 kDa, RNA from Toxoplasma gondii)
- Ap2 domain transcription factor ap2iv-1 (19 kDa, Protein from Toxoplasma gondii)
- Rna35 (8 kDa, RNA from Toxoplasma gondii)
- Bl36m (10 kDa, Protein from Toxoplasma gondii)
- Rrm domain-containing protein (47 kDa, Protein from Toxoplasma gondii)
- Rna37 (19 kDa, RNA from Toxoplasma gondii)
- Rna14 (16 kDa, RNA from Toxoplasma gondii)
- Ulr6 (4 kDa, RNA from Toxoplasma gondii)
- Ml181 (5 kDa, Protein from Toxoplasma gondii)
- Ulr3 (8 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul11m (19 kDa, Protein from Toxoplasma gondii)
- Fas1 domain-containing protein (37 kDa, Protein from Toxoplasma gondii)
- Bl19m (43 kDa, Protein from Toxoplasma gondii)
- Rna1 (30 kDa, RNA from Toxoplasma gondii)
- Putative 50s ribosomal protein l3 (34 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein l9, n-terminal domain-containing protein (9 kDa, Protein from Toxoplasma gondii)
- Ribosomal l25 family protein (37 kDa, Protein from Toxoplasma gondii)
- Hect-domain (ubiquitin-transferase) domain-containing protein (25 kDa, Protein from Toxoplasma gondii)
- Ap2 domain transcription factor ap2viib-2 (21 kDa, Protein from Toxoplasma gondii)
- Lsuc (8 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul29m (25 kDa, Protein from Toxoplasma gondii)
- Ml53 (13 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (51 kDa, Protein from Toxoplasma gondii)
- Bl35m (13 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ul24c (25 kDa, Protein from Toxoplasma gondii)
- Rna10 (28 kDa, RNA from Toxoplasma gondii)
- Putative ribosomal protein l28 (33 kDa, Protein from Toxoplasma gondii)
- Rna31 (11 kDa, RNA from Toxoplasma gondii)
- Ml148 (96 kDa, Protein from Toxoplasma gondii)
- Amp-dependent synthetase/ligase domain-containing protein (92 kDa, Protein from Toxoplasma gondii)
- Ml177 (13 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (85 kDa, Protein from Toxoplasma gondii)
- Ulr5 (4 kDa, RNA from Toxoplasma gondii)
- Putative 50s ribosomal protein l16 (20 kDa, Protein from Toxoplasma gondii)
- Ml174 (22 kDa, Protein from Toxoplasma gondii)
- Putative ribosomal protein l20 (14 kDa, Protein from Toxoplasma gondii)
- Ul1m (6 kDa, Protein from Toxoplasma gondii)
- Ml178 (10 kDa, Protein from Toxoplasma gondii)
- Ulr9 (17 kDa, RNA from Toxoplasma gondii)
- Transmembrane protein (31 kDa, Protein from Toxoplasma gondii)
- Bl32m (9 kDa, Protein from Toxoplasma gondii)
- Ml179 (12 kDa, Protein from Toxoplasma gondii)
- Ribosomal protein l15, putative (36 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l33 (14 kDa, Protein from Toxoplasma gondii)
- Ml185 (6 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l17 (29 kDa, Protein from Toxoplasma gondii)
- Ml173 (11 kDa, Protein from Toxoplasma gondii)
- Ssuf (12 kDa, RNA from Toxoplasma gondii)
- Peptidyl-prolyl cis-trans isomerase (26 kDa, Protein from Toxoplasma gondii)
- Rna29 (16 kDa, RNA from Toxoplasma gondii)
- Rna32 (5 kDa, RNA from Toxoplasma gondii)
- Putative 60s ribosomal protein l27 (8 kDa, Protein from Toxoplasma gondii)
- Rna13 (15 kDa, RNA from Toxoplasma gondii)
- Ribosomal l22p/l17e protein (41 kDa, Protein from Toxoplasma gondii)
- Ml180 (13 kDa, Protein from Toxoplasma gondii)
- Ml184 (4 kDa, Protein from Toxoplasma gondii)
- Duf6832 domain-containing protein (55 kDa, Protein from Toxoplasma gondii)
- Ul14m (12 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (43 kDa, Protein from Toxoplasma gondii)
- Rna38 (14 kDa, RNA from Toxoplasma gondii)
- Ml172 (15 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ul23m (25 kDa, Protein from Toxoplasma gondii)
- Lsub (9 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul4m (54 kDa, Protein from Toxoplasma gondii)
- Rna3 (29 kDa, RNA from Toxoplasma gondii)
- Ulr1 (8 kDa, RNA from Toxoplasma gondii)
- Ulr7,ulr8 (3 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ul24c (22 kDa, Protein from Toxoplasma gondii)
- Lsua (57 kDa, RNA from Toxoplasma gondii)
- Rap domain-containing protein (49 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (67 kDa, Protein from Toxoplasma gondii)
- Large ribosomal subunit protein ml54 (10 kDa, Protein from Toxoplasma gondii)
- Ml162 (30 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (58 kDa, Protein from Toxoplasma gondii)
- Rna16 (8 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein rpl22 (17 kDa, Protein from Toxoplasma gondii)
- Bl27m (20 kDa, Protein from Toxoplasma gondii)
- Rna15 (9 kDa, RNA from Toxoplasma gondii)
- Macro domain-containing protein (57 kDa, Protein from Toxoplasma gondii)
- Ml182 (14 kDa, Protein from Toxoplasma gondii)
- Putative 50s ribosomal protein l13 (24 kDa, Protein from Toxoplasma gondii)
- Lsud/e (89 kDa, RNA from Toxoplasma gondii)
- Transmembrane protein (4 kDa, Protein from Toxoplasma gondii)
- Lsu ribosomal protein l2p, putative (37 kDa, Protein from Toxoplasma gondii)
- Rna7 (29 kDa, RNA from Toxoplasma gondii)
- Ml164 (26 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (83 kDa, Protein from Toxoplasma gondii)
- Rap domain-containing protein (49 kDa, Protein from Toxoplasma gondii)
- Ml183 (3 kDa, Protein from Toxoplasma gondii)
- Rna2 (20 kDa, RNA from Toxoplasma gondii)
- Ml176 (11 kDa, Protein from Toxoplasma gondii)
- Rna6 (18 kDa, RNA from Toxoplasma gondii)
- Lsu structure derived from the lsu sample of the mitoribosome from t. gondii. (Complex from Toxoplasma gondii)
- Large ribosomal subunit protein bl21m (47 kDa, Protein from Toxoplasma gondii)
- Rna36 (10 kDa, RNA from Toxoplasma gondii)
- Ribosomal protein l46 (32 kDa, Protein from Toxoplasma gondii)
- Lsuf/g (62 kDa, RNA from Toxoplasma gondii)
- Ml40 (27 kDa, Protein from Toxoplasma gondii)
- Ulr4 (2 kDa, RNA from Toxoplasma gondii)
- Large ribosomal subunit protein ml49 (8 kDa, Protein from Toxoplasma gondii)
- Rna11 (22 kDa, RNA from Toxoplasma gondii)
- Ulr2 (11 kDa, RNA from Toxoplasma gondii)
Substrate Recruitment Pathways in the Yeast Exosome by Electron Microscopy
Liu JJ, Bratkowski MA, Liu X, Niu CY, Ke A, Wang HW
Nat Struct Mol Biol (2014) 21 pp. 95-102 [ DOI: doi:10.1038/nsmb.2736 Pubmed: 24336220 ]
- Rrp42 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp4 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp46-tap (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp45 (30 kDa, Protein from Saccharomyces cerevisiae)
- Mtr3 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rna10 (2 kDa, RNA from synthetic construct)
- Csl4 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp43 (40 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44 (110 kDa, Protein from Saccharomyces cerevisiae)
- Rrp41 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp40 (30 kDa, Protein from Saccharomyces cerevisiae)
- Rrp44-exosome incubated with rna10 (350 kDa, Sample)
Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction.
Zhang X, Settembre E, Xu C, Dormitzer PR, Bellamy R, Harrison SC, Grigorieff N
PNAS (2008) 105 pp. 1867-1872 [ Pubmed: 18238898 DOI: doi:10.1073/pnas.0711623105 ]
- Dsrna 7 (718 kDa, RNA from Bovine rotavirus)
- Dsrna 8 (688 kDa, RNA from Bovine rotavirus)
- Dsrna 6 (881 kDa, RNA from Bovine rotavirus)
- Vp1 (125 kDa, Protein from Bovine rotavirus)
- Vp3 (88 kDa, Protein from Bovine rotavirus)
- Dsrna 10 (488 kDa, RNA from Bovine rotavirus)
- Bovine rotavirus dlp (58 MDa, Sample)
- Vp6 (102 kDa, Protein from Bovine rotavirus)
- Dsrna 3 (1 MDa, RNA from Bovine rotavirus)
- Dsrna 9 (690 kDa, RNA from Bovine rotavirus)
- Vp2 (41 kDa, Protein from Bovine rotavirus)
- Dsrna 1 (2 MDa, RNA from Bovine rotavirus)
- Dsrna 5 (1 MDa, RNA from Bovine rotavirus)
- Dsrna 11 (434 kDa, RNA from Bovine rotavirus)
- Dsrna 2 (1 MDa, RNA from Bovine rotavirus)
- Dsrna 4 (1 MDa, RNA from Bovine rotavirus)