Type I-EHNH Cascade-ssDNA complex
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8yha
Q-score: 0.508
Zhang C, Chen F, Wang F, Xu H, Xue J, Li Z
Mol Cell (2024) 84 pp. 3141- [ Pubmed: 39047725 DOI: doi:10.1016/j.molcel.2024.06.033 ]
- Crispr system cascade subunit casc (41 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Zinc ion (65 Da, Ligand)
- Dna/rna (47-mer) (17 kDa, Macromolecule from Candidatus Cloacimonadota bacterium)
- Type i-ehnh cascade-ssdna complex (Complex from Candidatus Cloacimonadota bacterium)
- Crispr system cascade subunit casd (43 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- 61-nt crrna (19 kDa, RNA from Candidatus Cloacimonadota bacterium)
- Crispr-associated protein cse2 (crispr_cse2) (20 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated protein cse1 (crispr_cse1) (60 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
- Crispr-associated endoribonuclease cse3 (31 kDa, Protein from Candidatus Cloacimonetes bacterium ADurb.Bin088)
The cryo-EM structure of the Mycobacterium tuberculosis CRISPR-Csm complex
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 8x5d
Q-score: 0.547
Zhang H, Shi M, Ma X, Liu M, Wang N, Lu Q, Li Z, Zhao Y, Zhao H, Chen H, Zhang H, Jiang T, Ouyang S, Huo Y, Bi L
Int J Biol Macromol (2024) 260 pp. 129331-129331 [ DOI: doi:10.1016/j.ijbiomac.2024.129331 Pubmed: 38218299 ]
- Rna (47-mer) (59 kDa, RNA from Mycobacterium tuberculosis)
- Mycobacteria crispr-csm complexes (Complex from Mycobacterium tuberculosis)
- Crispr system cms endoribonuclease csm3 (26 kDa, Protein from Mycobacterium tuberculosis)
- Csm2 (15 kDa, Protein from Mycobacterium canettii)
- Crispr system cms protein csm5 (42 kDa, Protein from Mycobacterium tuberculosis)
- Csm2 (Complex from Mycobacterium canettii)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8f3c
Q-score: 0.419
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]
- Dna (38-mer) (12 kDa, DNA from Escherichia coli)
- Cryo-em consensus structure of escherichia coli que-pec (paused elongation complex) rna polymerase minus preq1 ligand (420 kDa, Complex from Escherichia coli)
- Dna-directed rna polymerase subunit omega (11 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna (39-mer) (11 kDa, DNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (36 kDa, Protein from Escherichia coli)
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 8g00
Q-score: 0.419
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (10 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (26 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Cryo-em structure of 3dva component 0 of escherichia coli que-pec (paused elongation complex) rna polymerase minus preq1 ligand . (420 kDa, Complex from Escherichia coli)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8g1s
Q-score: 0.389
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]
- Dna-directed rna polymerase subunit beta' (152 kDa, Protein from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha, dna-directed rna polymerase subunit beta, dna-directed rna polymerase subunit beta', dna-directed rna polymerase subunit omega, dna (Complex from Escherichia coli)
- Rna (47-mer) (15 kDa, RNA from Bacillus subtilis)
- Rna (Complex from Bacillus subtilis)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Dna-directed rna polymerase subunit omega (9 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Cryo-em structure of 3dva component 1 of escherichia coli que-pec (paused elongation complex) rna polymerase minus preq1 ligand (420 kDa, Complex)
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 8g2w
Q-score: 0.368
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Cryo-em structure of 3dva component 2 of escherichia coli que-pec (paused elongation complex) rna polymerase minus preq1 ligand (420 kDa, Complex from Escherichia coli)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (150 kDa, Protein from Escherichia coli)
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 8g4w
Q-score: 0.338
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Cryo-em consensus structure of escherichia coli que-pec (paused elongation complex) rna polymerase plus preq1 ligand (420 kDa, Complex from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- 7-deaza-7-aminomethyl-guanine (179 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (150 kDa, Protein from Escherichia coli)
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 8g7e
Q-score: 0.294
Chauvier A, Porta JC, Deb I, Ellinger E, Meze K, Frank AT, Ohi MD, Walter NG
Nat Struct Mol Biol (2023) 30 pp. 902-913 [ DOI: doi:10.1038/s41594-023-01002-x Pubmed: 37264140 ]
- Dna-directed rna polymerase subunit omega (8 kDa, Protein from Escherichia coli)
- Dna (39-mer) (12 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta (150 kDa, Protein from Escherichia coli)
- Dna (31-mer) (9 kDa, DNA from Escherichia coli)
- Dna-directed rna polymerase subunit alpha (25 kDa, Protein from Escherichia coli)
- Cryo-em structure of 3dva component 0 of escherichia coli que-pec (paused elongation complex) rna polymerase plus preq1 ligand (420 kDa, Complex from Escherichia coli)
- 7-deaza-7-aminomethyl-guanine (179 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Rna (47-mer) (15 kDa, RNA from Escherichia coli)
- Dna-directed rna polymerase subunit beta' (158 kDa, Protein from Escherichia coli)
D. vulgaris type I-C Cascade bound to dsDNA target
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 8dej
Q-score: 0.523
O'Brien RE, Bravo JPK, Ramos D, Hibshman GN, Wright JT, Taylor DW
Mol Cell (2023) 83 pp. 746- [ DOI: doi:10.1016/j.molcel.2023.01.024 Pubmed: 36805026 ]
- Dna (40-mer) (12 kDa, DNA from synthetic construct)
- Pre-crrna processing endonuclease (26 kDa, Protein from Desulfovibrio vulgaris)
- Crispr-associated protein, ct1133 family (14 kDa, Protein from Desulfovibrio vulgaris)
- Dna (48-mer) (14 kDa, Macromolecule from synthetic construct)
- Crispr-associated protein, tm1801 family (32 kDa, Protein from Desulfovibrio vulgaris)
- Crispr-associated protein, ct1133 family (68 kDa, Protein from Desulfovibrio vulgaris)
- Rna (47-mer) (15 kDa, RNA from Desulfovibrio vulgaris)
- Type i-c cascade bound to dsdna target (Complex)