T.thermophilus 30S ribosome with KsgA, class K1k2
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7v2l
Q-score: 0.524
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ Pubmed: 35316014 DOI: doi:10.1021/acschembio.1c00732 ]
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- Rna methyltransferase (Complex from Bacillus subtilis (strain 168))
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase at position 2 (746 kDa, Complex)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K1k4
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7v2m
Q-score: 0.478
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ Pubmed: 35316014 DOI: doi:10.1021/acschembio.1c00732 ]
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (771 kDa, Complex)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K2
Resolution: 3.6 Å
EM Method: Single-particle
Fitted PDBs: 7v2n
Q-score: 0.446
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ Pubmed: 35316014 DOI: doi:10.1021/acschembio.1c00732 ]
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (710 kDa, Complex)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K4
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 7v2o
Q-score: 0.466
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ Pubmed: 35316014 DOI: doi:10.1021/acschembio.1c00732 ]
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal with bound ksga, a rna methyltransferase (740 kDa, Complex)
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K5
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7v2p
Q-score: 0.53
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ Pubmed: 35316014 DOI: doi:10.1021/acschembio.1c00732 ]
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal with bound ksga, a rna methyltransferase (720 kDa, Complex)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)
T.thermophilus 30S ribosome with KsgA, class K6
Resolution: 3.24 Å
EM Method: Single-particle
Fitted PDBs: 7v2q
Q-score: 0.486
Singh J, Raina R, Vinothkumar KR, Anand R
ACS Chem Biol (2022) 17 pp. 829-839 [ Pubmed: 35316014 DOI: doi:10.1021/acschembio.1c00732 ]
- 30s ribosomal protein s3 (26 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s5 (17 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus HB8)
- Ksga (Complex from Bacillus subtilis (strain 168))
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s12 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- Ribosomal rna small subunit methyltransferase a (33 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal with bound ksga, a rna methyltransferase (740 kDa, Complex)
- 30s ribosomal protein s19 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s11 (13 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s7 (18 kDa, Protein from Thermus thermophilus HB8)
- 16s ribosomal rna (493 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s18 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal subunit (Complex from Thermus thermophilus HB8)
- 30s ribosomal protein s17 (12 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s20 (11 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s16 (10 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (29 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (14 kDa, Protein from Thermus thermophilus HB8)