Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7pd3
Q-score: 0.394
Chandrasekaran V, Desai N, Burton NO, Yang H, Price J, Miska EA, Ramakrishnan V
eLife (2021) 10 [ DOI: doi:10.7554/eLife.68806 Pubmed: 34609277 ]
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Human)
- Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from Human)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Human)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 4'-phosphopantetheine (358 Da, Ligand)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Human)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Human)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Human)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Human)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Human)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Human)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Human)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Human)
- O2'-methylguanosine-5'-monophosphate (377 Da, Ligand)
- Guanosine-5'-monophosphate (363 Da, Ligand)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Human)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Human)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Human)
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Human)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Human)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Human)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Human)
- Ml65 (2 kDa, Protein from Human)
- Transcription termination factor 4, mitochondrial (44 kDa, Protein from Human)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Human)
- Cytidine-5'-monophosphate (323 Da, Ligand)
- 16s rrna (500 kDa, RNA from Human)
- Adenosine-5'-monophosphate (347 Da, Ligand)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Human)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Human)
- S-adenosylmethionine (398 Da, Ligand)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Human)
- Uridine-5'-monophosphate (324 Da, Ligand)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Human)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Human)
- Pseudouridine-5'-monophosphate (324 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Human)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Human)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Human)
- Human mitoribosomal large subunit assembly intermediate (Complex from Homo sapiens)
- Mt-trnaval (22 kDa, RNA from Human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Human)
- Mitochondrial ribosome-associated gtpase 1 (37 kDa, Protein from Human)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Human)
- Mief1 upstream open reading frame protein (8 kDa, Protein from Human)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Human)
- 5-methylcytosine rrna methyltransferase nsun4 (43 kDa, Protein from Human)
Structure of the stalled human mitoribosome with P- and E-site mt-tRNAs
Resolution: 4.4 Å
EM Method: Single-particle
Fitted PDBs: 7a5f
Q-score: 0.396
Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V
Science (2020) 370 pp. 1105-1110 [ Pubmed: 33243891 DOI: doi:10.1126/science.abc7782 ]
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
- Mt-trna (23 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
- Nascent chain (2 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
- Sulfate ion (96 Da, Ligand)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
- 50s ribosomal protein l1 (Complex from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
- Sodium ion (22 Da, Ligand)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial,39s ribosomal protein s30, mitochondrial,39s ribosomal protein s30, mitochondrial,ml65 (52 kDa, Protein from Homo sapiens)
- Human mitoribosome (Complex)
- Oxa1l (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
- Mrna (3 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
- Human mitoribosome (Complex from Homo sapiens)
- Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
- Malonate ion (102 Da, Ligand)
- 50s ribosomal protein l1 (24 kDa, Protein from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
- Mt-trna val (22 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
- Chloride ion (35 Da, Ligand)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
Structure of the elongating human mitoribosome bound to mtEF-Tu.GMPPCP and A/T mt-tRNA
Resolution: 4.33 Å
EM Method: Single-particle
Fitted PDBs: 7a5g
Q-score: 0.402
Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V
Science (2020) 370 pp. 1105-1110 [ Pubmed: 33243891 DOI: doi:10.1126/science.abc7782 ]
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
- Nascent chain (2 kDa, Protein from Homo sapiens)
- Oxa1l tail (2 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
- Sulfate ion (96 Da, Ligand)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
- Spermidine (145 Da, Ligand)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
- Elongation factor tu, mitochondrial (49 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (23 kDa, Protein from Homo sapiens)
- Sodium ion (22 Da, Ligand)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l18, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
- Mt-trnaval (22 kDa, RNA from Homo sapiens)
- Human mitoribosome (Complex)
- 39s ribosomal protein l43, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
- P trna (23 kDa, RNA from Homo sapiens)
- Rna (5'-r(p*cp*a)-3') (589 Da, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
- E trna (24 kDa, RNA from Homo sapiens)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
- 50s ribosomal protein l1 homology model (Complex from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial,39s ribosomal protein s30, mitochondrial,ml65 (52 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
- Human mitoribosome (Complex from Homo sapiens)
- Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
- Malonate ion (102 Da, Ligand)
- 50s ribosomal protein l1 (24 kDa, Protein from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
- Water (18 Da, Ligand)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l52, mitochondrial (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (23 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
- Chloride ion (35 Da, Ligand)
- Mrna (3 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
Structure of the split human mitoribosomal large subunit with rescue factors mtRF-R and MTRES1
Resolution: 3.3 Å
EM Method: Single-particle
Fitted PDBs: 7a5h
Q-score: 0.553
Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V
Science (2020) 370 pp. 1105-1110 [ Pubmed: 33243891 DOI: doi:10.1126/science.abc7782 ]
- Unknown protein/protein extension (2 kDa, Protein from Homo sapiens)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from human)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from human)
- Mt-trna (23 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from human)
- 4'-phosphopantetheine (358 Da, Ligand)
- Mt-trnaval (23 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from human)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from human)
- Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from human)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from human)
- Mitochondrial transcription rescue factor 1 (27 kDa, Protein from human)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from human)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from human)
- 16s rrna (500 kDa, RNA from human)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from human)
- Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from human)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from human)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from human)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from human)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from human)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from human)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from human)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from human)
- Nascent chain (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from human)
- Mief1 upstream open reading frame protein (8 kDa, Protein from human)
- 39s ribosomal protein l48, mitochondrial (21 kDa, Protein from human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from human)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from human)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from human)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from human)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from human)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from human)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from human)
- 39s ribosomal protein l43, mitochondrial (17 kDa, Protein from human)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from human)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from human)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from human)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from human)
- Probable peptide chain release factor c12orf65, mitochondrial (18 kDa, Protein from human)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from human)
- Human mitoribosome (Complex from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from human)
Structure of the human mitoribosome with A- P-and E-site mt-tRNAs
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7a5i
Q-score: 0.494
Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V
Science (2020) 370 pp. 1105-1110 [ Pubmed: 33243891 DOI: doi:10.1126/science.abc7782 ]
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from Homo sapiens)
- Mt-trna (23 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l48, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from Homo sapiens)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from Homo sapiens)
- Nascent chain (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from Homo sapiens)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 39s ribosomal protein l43, mitochondrial (17 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from Homo sapiens)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from Homo sapiens)
- Mrna (2 kDa, RNA from Homo sapiens)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from Homo sapiens)
- Unknown protein/protein extension (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from Homo sapiens)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
- Human mitoribosome (Complex from Homo sapiens)
- Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from Homo sapiens)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from Homo sapiens)
- Mt-trnaval (23 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from Homo sapiens)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from Homo sapiens)
- 16s rrna (500 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from Homo sapiens)
- Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
- Chloride ion (35 Da, Ligand)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
Structure of the split human mitoribosomal large subunit with P-and E-site mt-tRNAs
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7a5j
Q-score: 0.497
Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V
Science (2020) 370 pp. 1105-1110 [ Pubmed: 33243891 DOI: doi:10.1126/science.abc7782 ]
- Unknown protein/protein extension (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from human)
- Mt-trna (23 kDa, RNA from Homo sapiens)
- Unknown protein/protein extension (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from human)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from human)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from human)
- Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from human)
- 50s ribosomal protein l1 (Complex from Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039))
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from human)
- Zinc ion (65 Da, Ligand)
- Sodium ion (22 Da, Ligand)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from human)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from human)
- 16s rrna (500 kDa, RNA from human)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from human)
- Mitochondrial assembly of ribosomal large subunit protein 1 (26 kDa, Protein from human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from human)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from human)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from human)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from human)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from human)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from human)
- Human mitoribosome (Complex)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from human)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from human)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from human)
- Unknown protein/protein extension (1 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from human)
- Mief1 upstream open reading frame protein (8 kDa, Protein from human)
- 39s ribosomal protein l48, mitochondrial (21 kDa, Protein from human)
- 50s ribosomal protein l1 (24 kDa, Protein from Thermus thermophilus HB27)
- Mt-trnaval (22 kDa, RNA from human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from human)
- Nascent chain (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from human)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from human)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from human)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from human)
- Ribosome (Complex from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from human)
- Magnesium ion (24 Da, Ligand)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from human)
- 39s ribosomal protein l43, mitochondrial (17 kDa, Protein from human)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from human)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from human)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from human)
- Acyl carrier protein, mitochondrial (17 kDa, Protein from human)
- Chloride ion (35 Da, Ligand)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from human)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from human)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from human)
Structure of the human mitoribosome in the post translocation state bound to mtEF-G1
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 7a5k
Q-score: 0.408
Desai N, Yang H, Chandrasekaran V, Kazi R, Minczuk M, Ramakrishnan V
Science (2020) 370 pp. 1105-1110 [ Pubmed: 33243891 DOI: doi:10.1126/science.abc7782 ]
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from human)
- Mt-trna (23 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from human)
- 39s ribosomal protein l38, mitochondrial (44 kDa, Protein from human)
- 39s ribosomal protein s18a, mitochondrial (22 kDa, Protein from human)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from human)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from human)
- 39s ribosomal protein l4, mitochondrial (34 kDa, Protein from human)
- 39s ribosomal protein l51, mitochondrial (15 kDa, Protein from human)
- 39s ribosomal protein l39, mitochondrial (38 kDa, Protein from human)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from human)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from human)
- Spermidine (145 Da, Ligand)
- Peptidyl-trna hydrolase ict1, mitochondrial (23 kDa, Protein from human)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from human)
- 39s ribosomal protein l48, mitochondrial (21 kDa, Protein from human)
- 39s ribosomal protein l17, mitochondrial (20 kDa, Protein from human)
- 39s ribosomal protein l2, mitochondrial (33 kDa, Protein from human)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from human)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from human)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from human)
- 39s ribosomal protein l42, mitochondrial (16 kDa, Protein from human)
- 39s ribosomal protein l40, mitochondrial (24 kDa, Protein from human)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from human)
- 39s ribosomal protein l44, mitochondrial (37 kDa, Protein from human)
- Nascent chain (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l13, mitochondrial (20 kDa, Protein from human)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from human)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from human)
- 39s ribosomal protein l3, mitochondrial (38 kDa, Protein from human)
- Mitochondrial inner membrane protein oxa1l (48 kDa, Protein from human)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from human)
- 39s ribosomal protein l9, mitochondrial (30 kDa, Protein from human)
- Cdna flj76418, highly similar to homo sapiens mitochondrial ribosomal protein l52 (mrpl52), transcript variant 1, mrna (13 kDa, Protein from human)
- 39s ribosomal protein l54, mitochondrial (15 kDa, Protein from human)
- 39s ribosomal protein l24, mitochondrial (24 kDa, Protein from human)
- 39s ribosomal protein l47, mitochondrial (29 kDa, Protein from human)
- 39s ribosomal protein l36, mitochondrial (11 kDa, Protein from human)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from human)
- 39s ribosomal protein l37, mitochondrial (48 kDa, Protein from human)
- 39s ribosomal protein l45, mitochondrial (35 kDa, Protein from human)
- 39s ribosomal protein l22, mitochondrial (24 kDa, Protein from human)
- Elongation factor g, mitochondrial (83 kDa, Protein from human)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from human)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from human)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from human)
- Magnesium ion (24 Da, Ligand)
- 39s ribosomal protein l23, mitochondrial (17 kDa, Protein from human)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from human)
- 39s ribosomal protein l10, mitochondrial (29 kDa, Protein from human)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from human)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from human)
- 39s ribosomal protein l33, mitochondrial (7 kDa, Protein from human)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Rna (589 Da, RNA from Homo sapiens)
- Ribosomal protein 63, mitochondrial (12 kDa, Protein from human)
- 16s rrna (500 kDa, RNA from human)
- 39s ribosomal protein l55, mitochondrial (15 kDa, Protein from human)
- Growth arrest and dna damage-inducible proteins-interacting protein 1 (25 kDa, Protein from human)
- 39s ribosomal protein l11, mitochondrial (20 kDa, Protein from human)
- 39s ribosomal protein l34, mitochondrial (10 kDa, Protein from human)
- 39s ribosomal protein l27, mitochondrial (16 kDa, Protein from human)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from human)
- 39s ribosomal protein l1, mitochondrial (32 kDa, Protein from human)
- 39s ribosomal protein l15, mitochondrial (33 kDa, Protein from human)
- 39s ribosomal protein l16, mitochondrial (28 kDa, Protein from human)
- 39s ribosomal protein l46, mitochondrial (31 kDa, Protein from human)
- 39s ribosomal protein l49, mitochondrial (19 kDa, Protein from human)
- 39s ribosomal protein l20, mitochondrial (17 kDa, Protein from human)
- 39s ribosomal protein l28, mitochondrial (30 kDa, Protein from human)
- Unknown protein (2 kDa, Protein from Homo sapiens)
- 39s ribosomal protein l14, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from human)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from human)
- Human mitoribosome (Complex from Homo sapiens)
- Aurora kinase a-interacting protein (22 kDa, Protein from human)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from human)
- 39s ribosomal protein l32, mitochondrial (21 kDa, Protein from human)
- Mt-trnaval (23 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l21, mitochondrial (22 kDa, Protein from human)
- Zinc ion (65 Da, Ligand)
- 39s ribosomal protein s30, mitochondrial (50 kDa, Protein from human)
- Coiled-coil-helix-coiled-coil-helix domain-containing protein 1 (13 kDa, Protein from human)
- 12s rrna (306 kDa, RNA from Homo sapiens)
- 39s ribosomal protein l53, mitochondrial (12 kDa, Protein from human)
- 39s ribosomal protein l30, mitochondrial (18 kDa, Protein from human)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from human)
- 39s ribosomal protein l50, mitochondrial (18 kDa, Protein from human)
- 39s ribosomal protein l35, mitochondrial (21 kDa, Protein from human)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from human)
- 39s ribosomal protein l41, mitochondrial (15 kDa, Protein from human)
- Mitochondrial ribosomal protein l18, isoform cra_b (20 kDa, Protein from human)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from human)
- 39s ribosomal protein l43, mitochondrial (17 kDa, Protein from human)
- 39s ribosomal protein l19, mitochondrial (33 kDa, Protein from human)
Rabbit 80S ribosome stalled on a poly(A) tail
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 6sgc
Q-score: 0.575
Chandrasekaran V, Juszkiewicz S, Choi J, Puglisi JD, Brown A, Shao S, Ramakrishnan V, Hegde RS
Nat Struct Mol Biol (2019) 26 pp. 1132-1140 [ DOI: doi:10.1038/s41594-019-0331-x Pubmed: 31768042 ]
- Polya mrna (Complex from Homo sapiens)
- El22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein (24 kDa, Protein from Rabbit)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Rabbit)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- El29 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Rabbit)
- 40s ribosomal protein s30 (14 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- Spermidine (145 Da, Ligand)
- Ribosomal protein l11 (20 kDa, Protein from Rabbit)
- El32 (15 kDa, Protein from Rabbit)
- 60s ribosomal protein l5 (34 kDa, Protein from Rabbit)
- 18s ribosomal rna (602 kDa, RNA from Oryctolagus cuniculus)
- Us2 (32 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Rabbit)
- 60s ribosomal protein l6 (33 kDa, Protein from Rabbit)
- Ribosomal_s10 domain-containing protein (13 kDa, Protein from Rabbit)
- Ribosomal_l7ae domain-containing protein (12 kDa, Protein from Rabbit)
- Us11 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Rabbit)
- Us5 (31 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s16 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein s3a (30 kDa, Protein from Rabbit)
- Ul6 (21 kDa, Protein from Rabbit)
- El33 (12 kDa, Protein from Rabbit)
- Ul4 (47 kDa, Protein from Oryctolagus cuniculus)
- Rabbit 80s ribosome stalled on polya mrna (4 MDa, Complex)
- Es13 (17 kDa, Protein from Rabbit)
- Es17 (15 kDa, Protein from Rabbit)
- Es21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (29 kDa, Protein from Rabbit)
- Us12 (15 kDa, Protein from Oryctolagus cuniculus)
- El13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s8 (24 kDa, Protein from Rabbit)
- Ribosomal protein l8 (28 kDa, Protein from Rabbit)
- Es19 (16 kDa, Protein from Rabbit)
- 40s ribosomal protein s27 (9 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- El19 (23 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Rabbit)
- El34 (13 kDa, Protein from Rabbit)
- Ul3 (46 kDa, Protein from Rabbit)
- El8 (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s13_n domain-containing protein (17 kDa, Protein from Rabbit)
- El38 (8 kDa, Protein from Rabbit)
- 40s ribosomal protein s7 (22 kDa, Protein from Rabbit)
- Ribosomal protein s15a (14 kDa, Protein from Rabbit)
- El43 (10 kDa, Protein from Rabbit)
- Poly-lysine nascent chain (2 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Rabbit)
- Ribosomal protein s5 (22 kDa, Protein from Rabbit)
- Ul10 (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Rabbit)
- Ribosomal protein s28 (7 kDa, Protein from Rabbit)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- 40s ribosomal protein s12 (14 kDa, Protein from Rabbit)
- 40s ribosomal protein s6 (28 kDa, Protein from Rabbit)
- Ribosomal protein l23 (14 kDa, Protein from Rabbit)
- Ribosomal protein l14 (23 kDa, Protein from Rabbit)
- El31 (14 kDa, Protein from Rabbit)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Rabbit)
- Wd_repeats_region domain-containing protein (35 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Ribosomal protein l26 (17 kDa, Protein from Rabbit)
- Es25 (13 kDa, Protein from Rabbit)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein s27a (18 kDa, Protein from Rabbit)
- S10_plectin domain-ontaining protein (18 kDa, Protein from Rabbit)
- Es24 (15 kDa, Protein from Oryctolagus cuniculus)
- Us5 (26 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Rabbit)
- El40 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Rabbit)
- Trna (lys3) (24 kDa, RNA from Oryctolagus cuniculus)
- Trash domain-containing protein (17 kDa, Protein from Rabbit)
- Ul29 (14 kDa, Protein from Rabbit)
- Polya mrna (3 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l10 (24 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s11 (18 kDa, Protein from Rabbit)
- Us19 (17 kDa, Protein from Rabbit)
- Ribosomal_l28e domain-containing protein (15 kDa, Protein from Rabbit)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- El42 (12 kDa, Protein from Rabbit)
- Ribosomal_l18e/l15p domain-containing protein (16 kDa, Protein from Rabbit)
Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6q9a
Q-score: 0.44
Rae CD, Gordiyenko Y, Ramakrishnan V
Science (2019) 363 pp. 740-744 [ Pubmed: 30765567 DOI: doi:10.1126/science.aav9370 ]
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- Ssra-binding protein (Complex from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- Nascent peptide (1 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Tmrna (117 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (13 kDa, Protein from Escherichia coli)
- Ssra-binding protein (13 kDa, Protein from Escherichia coli)
- Tmrna (Complex from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- Nascent peptide (Complex from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli)
- P-site trna (24 kDa, RNA from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- Ribosome (Complex from Escherichia coli)
- Structure of tmrna smpb bound in state past e site of e. coli 70s ribosome (Complex)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
Structure of tmRNA SmpB bound in A site of E. coli 70S ribosome
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6q97
Q-score: -0.001
Rae CD, Gordiyenko Y, Ramakrishnan V
Science (2019) 363 pp. 740-744 [ Pubmed: 30765567 DOI: doi:10.1126/science.aav9370 ]
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- Tmrna-smpb, nascent peptide, mrna, p-site trna, e-site trna (Complex from Escherichia coli)
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Tmrna smpb bound in a site of e. coli 70s ribosome (Complex)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 70s ribosome (Cellular component from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
- Nascent peptide (2 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (25 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli)
- Water (18 Da, Ligand)
- 16s ribosomal rna (497 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- Trna-val (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l10 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Ssra-binding protein (16 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l22 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- Transfer-messenger rna (tmrna) (117 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- Trna-met (24 kDa, RNA from Escherichia coli)
- Mrna (1 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)