Ternary complex of translating ribosome, NAC and METAP1
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8p2k
Q-score: 0.483
Gamerdinger M, Jia M, Schloemer R, Rabl L, Jaskolowski M, Khakzar KM, Ulusoy Z, Wallisch A, Jomaa A, Hunaeus G, Scaiola A, Diederichs K, Ban N, Deuerling E
Science (2023) 380 pp. 1238-1243 [ Pubmed: 37347872 DOI: doi:10.1126/science.adg3297 ]
- Ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l5 eukaryotic c-terminal domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- E-site trna (15 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Glucose-6-phosphate isomerase (7 kDa, Protein from Oryctolagus cuniculus)
- Transcription factor btf3 (14 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Spermidine (145 Da, Ligand)
- 40s ribosomal protein s13 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- Any 5'-monophosphate nucleotide (214 Da, Ligand)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s14 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s2 (31 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosome translating a cytosolic peptide (Complex from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Ternary complex of translating ribosome, nac and metap1 (Complex from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Unknown atom or ion (Ligand)
- 60s ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s9 (22 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Nascent polypeptide-associated complex subunit alpha (23 kDa, Protein from Homo sapiens)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- Methionine aminopeptidase 1 (43 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- Acetylamino-acetic acid (117 Da, Ligand)
- 40s ribosomal protein s19 (16 kDa, Protein from Oryctolagus cuniculus)
- Complex of nac and metap1 at the tennel exit of translating ribosome (Complex)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- S10_plectin domain-containing protein (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 40s ribosomal protein s29 (6 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- Water (18 Da, Ligand)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- P-site val-trna (24 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Spermine (202 Da, Ligand)
- 60s ribosomal protein l39-like (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l37a (10 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul30 (29 kDa, Protein from Oryctolagus cuniculus)
Structure of the TRAP complex with the Sec translocon and a translating ribosome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 8btk
Q-score: 0.362
Jaskolowski M, Jomaa A, Gamerdinger M, Shrestha S, Leibundgut M, Deuerling E, Ban N
Nat Struct Mol Biol (2023) 30 pp. 770-777 [ DOI: doi:10.1038/s41594-023-00990-0 Pubmed: 37170030 ]
- 40s ribosomal protein s27 (9 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s7 (47 kDa, Protein from Oryctolagus cuniculus)
- Es26 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s4 (29 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Structure of the trap complex with the sec translocon and a translating ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein es10 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Us15 (17 kDa, Protein from Oryctolagus cuniculus)
- Spermidine (145 Da, Ligand)
- 40s ribosomal protein s24 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s14 (16 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein sa (32 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_s5_c domain-containing protein,40s ribosomal protein s2 (31 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- Mrna (1 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein s9 (predicted) (22 kDa, Protein from Oryctolagus cuniculus)
- El30 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (30 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (Complex from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein ul1 (24 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s11 (18 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3 (31 kDa, Protein from Oryctolagus cuniculus)
- P-site trna (24 kDa, RNA from Oryctolagus cuniculus)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- 40s ribosomal protein s21 (9 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s25 (13 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (13 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (26 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit alpha (32 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us10 (13 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit beta (9 kDa, Protein from Canis lupus familiaris)
- 40s ribosomal protein s12 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein us19 (17 kDa, Protein from Oryctolagus cuniculus)
- L13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l22 (14 kDa, Protein from Oryctolagus cuniculus)
- Translocon-associated protein subunit beta (20 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s27a (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (28 kDa, Protein from Oryctolagus cuniculus)
- Acetylamino-acetic acid (117 Da, Ligand)
- Translocon-associated protein subunit delta (18 kDa, Protein from Canis lupus familiaris)
- Ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s19 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s28 (7 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit gamma (7 kDa, Protein from Canis lupus familiaris)
- 18s rrna (603 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s acidic ribosomal protein p0 (34 kDa, Protein from Oryctolagus cuniculus)
- Sec61 translocon (Complex from canis lupus familiaris)
- 40s ribosomal protein s30 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s3a (30 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- Ul30,60s ribosomal protein l7 (29 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal large subunit (60s) (Complex from Oryctolagus cuniculus)
- Nascent chain (2 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s8 (24 kDa, Protein from Oryctolagus cuniculus)
- Signal sequence receptor subunit 3 (21 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ubiquitin (14 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein es17 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s23 (15 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s18 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (12 kDa, Protein from Oryctolagus cuniculus)
- 40s ribosomal protein s6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal small subunit (ssu) (Complex from Oryctolagus cuniculus)
- Ul22 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein s15a (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- Us14 (6 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Protein transport protein sec61 subunit alpha isoform 1 (52 kDa, Protein from Canis lupus familiaris)
- Spermine (202 Da, Ligand)
- Ribosomal protein s5 (22 kDa, Protein from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
- Trap complex (Complex from canis lupus familiaris)
- Rack1 (35 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- Us9 (19 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Translating 70S ribosome in the unrotated state (P and E, tRNAs)
Resolution: 1.55 Å
EM Method: Single-particle
Fitted PDBs: 8b0x
Q-score: 0.767
Fromm SA, O'Connor KM, Purdy M, Bhatt PR, Loughran G, Atkins JF, Jomaa A, Mattei S
Nat Commun (2023) 14 pp. 1095-1095 [ DOI: doi:10.1038/s41467-023-36742-3 Pubmed: 36841832 ]
- Potassium ion (39 Da, Ligand)
- 16s rrna (503 kDa, RNA from Escherichia coli B)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s21 (8 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli B)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli B)
- 23s rrna (948 kDa, RNA from Escherichia coli B)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli B)
- Water (18 Da, Ligand)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli B)
- 5s rrna (38 kDa, RNA from Escherichia coli B)
- 70s ribosome (2 MDa, Complex from Escherichia coli B)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli B)
- P-site trna (24 kDa, RNA from Escherichia coli B)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli B)
- Mrna (1 kDa, RNA from Escherichia coli B)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli B)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli B)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli B)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli B)
Ternary complex of ribosome nascent chain with SRP and NAC
Resolution: 2.83 Å
EM Method: Single-particle
Fitted PDBs: 7qwq
Q-score: 0.426
Jomaa A, Gamerdinger M, Hsieh HH, Wallisch A, Chandrasekaran V, Ulusoy Z, Scaiola A, Hegde RS, Shan SO, Ban N, Deuerling E
Science (2022) 375 pp. 839-844 [ Pubmed: 35201867 DOI: doi:10.1126/science.abl6459 ]
- Nascent polypeptide-associated complex subunit alpha (23 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- L8 (26 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain preprolactin (9 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- Isoform 2 of transcription factor btf3 (17 kDa, Protein from Homo sapiens)
- El42 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ternary ribosome-nascent chain srp nac complex (Complex)
- Signal recognition particle proteins (Complex from Homo sapiens)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 54 kda protein (55 kDa, Protein from Homo sapiens)
- Srp rna 7sl (Complex from Homo sapiens)
- Nascent chain preprolactin (Complex from Homo sapiens)
- Isoform 2 of transcription factor btf3 (Complex from Homo sapiens)
- 60s ribosomal protein l13a (56 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l17 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp68 (70 kDa, Protein from Homo sapiens)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 19 kda protein (16 kDa, Protein from Homo sapiens)
- Srp rna 7sl (54 kDa, RNA from Homo sapiens)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul3 (46 kDa, Protein from Homo sapiens)
- Ubiquitin a-52 residue ribosomal protein fusion product 1 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Structure of the ribosome-nascent chain containing an ER signal sequence in complex with NAC
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 7qwr
Q-score: 0.454
Jomaa A, Gamerdinger M, Hsieh HH, Wallisch A, Chandrasekaran V, Ulusoy Z, Scaiola A, Hegde RS, Shan SO, Ban N, Deuerling E
Science (2022) 375 pp. 839-844 [ Pubmed: 35201867 DOI: doi:10.1126/science.abl6459 ]
- Nascent polypeptide-associated complex subunit alpha (23 kDa, Protein from Homo sapiens)
- Ribosome-nascent chain containing an er signal sequence in complex with nac (Complex)
- 60s ribosomal protein l22 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- L13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- El42 (16 kDa, Protein from Oryctolagus cuniculus)
- Isoform 2 of transcription factor btf3 (17 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- Isoform 2 of transcription factor btf3 (Complex from Homo sapiens)
- 60s ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- Nascent polypeptide-associated complex subunit alpha (Complex from Homo sapiens)
- Ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (56 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain pre-prolactin (Complex from Homo sapiens)
- 60s ribosomal protein l17 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain pre-prolactin (2 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Structure of ribosome translating beta-tubulin in complex with TTC5 and NAC
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 7qws
Q-score: -0.054
Jomaa A, Gamerdinger M, Hsieh HH, Wallisch A, Chandrasekaran V, Ulusoy Z, Scaiola A, Hegde RS, Shan SO, Ban N, Deuerling E
Science (2022) 375 pp. 839-844 [ Pubmed: 35201867 DOI: doi:10.1126/science.abl6459 ]
- Nascent chain tubulin beta (Complex from Homo sapiens)
- Tetratricopeptide repeat protein 5 (Complex from Homo sapiens)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosome (Complex from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l19 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35a (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- El42 (16 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l38 (8 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27a (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l28 (15 kDa, Protein from Oryctolagus cuniculus)
- Tetratricopeptide repeat protein 5 (48 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- Nascent polypeptide-associated complex subunit alpha (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l18 (21 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (12 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l3 (46 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (17 kDa, Protein from Oryctolagus cuniculus)
- 5s rrna (38 kDa, RNA from Oryctolagus cuniculus)
- Ribosome translating beta-tubulin in complex with ttc5 and nac (Complex)
- 60s ribosomal protein l17 (17 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Transcription factor btf3 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l23en domain-containing protein (17 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- 5.8s rrna (50 kDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- Nascent chain tubulin beta (2 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l30 (12 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l35 (14 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l13a (56 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l40 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l21 (18 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l32 (18 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal_l18_c domain-containing protein (34 kDa, Protein from Oryctolagus cuniculus)
Resolution: 2.8 Å
EM Method: Single-particle
Fitted PDBs: 7obr
Q-score: 0.492
Jomaa A, Eitzinger S, Zhu Z, Chandrasekar S, Kobayashi K, Shan SO, Ban N
Cell Rep (2021) 36 pp. 109350-109350 [ Pubmed: 34260909 DOI: doi:10.1016/j.celrep.2021.109350 ]
- Guanosine-5'-diphosphate (443 Da, Ligand)
- Signal recognition particle subunit srp68 (70 kDa, Protein from Canis lupus familiaris)
- 60s ribosomal protein l36 (11 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 19 (16 kDa, Protein from Canis lupus familiaris)
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- Srp rna (80 kDa, RNA from Canis lupus familiaris)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13a (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l8 (26 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l30 (10 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- 28s rrna (1 MDa, RNA from Oryctolagus cuniculus)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 14 kda protein (12 kDa, Protein from Canis lupus familiaris)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (28 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Dipeptidyl aminopeptidase b (7 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
- Ul3 (45 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- Polypeptide nascent chain (Complex from Saccharomyces cerevisiae)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- El32 (18 kDa, Protein from Oryctolagus cuniculus)
- Rnc-srp complex (Complex from Canis lupus familiaris)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l18a (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 54 kda protein (55 kDa, Protein from Canis lupus familiaris)
- Rnc-srp complex (Complex)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 9 kda protein (10 kDa, Protein from Canis lupus familiaris)
- Signal recognition particle subunit srp72 (74 kDa, Protein from Canis lupus familiaris)
- Rnc-srp complex (Complex from Oryctolagus cuniculus)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
Mammalian ribosome nascent chain complex with SRP and SRP receptor in early state A
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 7nfx
Q-score: 0.432
Lee JH, Jomaa A, Chung S, Hwang Fu YH, Qian R, Sun X, Hsieh HH, Chandrasekar S, Bi X, Mattei S, Boehringer D, Weiss S, Ban N, Shan SO
Sci Adv (2021) 7 [ Pubmed: 34020957 DOI: doi:10.1126/sciadv.abg0942 ]
- 5.8s ribosomal rna (50 kDa, RNA from Oryctolagus cuniculus)
- Ribosomal protein l11 (20 kDa, Protein from Oryctolagus cuniculus)
- Zinc ion (65 Da, Ligand)
- Ul30 (26 kDa, Protein from Oryctolagus cuniculus)
- 28s ribosomal rna (1 MDa, RNA from Oryctolagus cuniculus)
- 60s ribosomal protein l10 (24 kDa, Protein from Oryctolagus cuniculus)
- El28 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l41 (3 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l7a (36 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l22 (11 kDa, Protein from Oryctolagus cuniculus)
- Signal sequence (1 kDa, Protein from Homo sapiens)
- Signal recognition particle 14 kda protein (14 kDa, Protein from Homo sapiens)
- El18 (21 kDa, Protein from Oryctolagus cuniculus)
- Srp rna 7sl (96 kDa, RNA from Homo sapiens)
- 60s ribosomal protein el19 (21 kDa, Protein from Oryctolagus cuniculus)
- Ul29 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l24 (7 kDa, Protein from Oryctolagus cuniculus)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Srp (Complex from Homo sapiens)
- 60s ribosomal protein l4 (46 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l37 (11 kDa, Protein from Oryctolagus cuniculus)
- El39 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l23 (14 kDa, Protein from Oryctolagus cuniculus)
- El42 (12 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 54 kda protein (55 kDa, Protein from Homo sapiens)
- El36 (12 kDa, Protein from Oryctolagus cuniculus)
- El30 (10 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 9 kda protein (10 kDa, Protein from Homo sapiens)
- Ul22 (17 kDa, Protein from Oryctolagus cuniculus)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- El32 (15 kDa, Protein from Oryctolagus cuniculus)
- Signal sequence (Complex from Homo sapiens)
- El31 (14 kDa, Protein from Oryctolagus cuniculus)
- Ribosome nascent chain complex with srp and srp receptor (3 MDa, Complex)
- Ribosomal protein l26 (17 kDa, Protein from Oryctolagus cuniculus)
- Ul23 (17 kDa, Protein from Oryctolagus cuniculus)
- El43 (10 kDa, Protein from Oryctolagus cuniculus)
- Ul15 (16 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle subunit srp68 (70 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l27 (15 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l34 (14 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l6 (33 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle receptor subunit alpha (69 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l9 (21 kDa, Protein from Oryctolagus cuniculus)
- El21 (18 kDa, Protein from Oryctolagus cuniculus)
- El33 (12 kDa, Protein from Oryctolagus cuniculus)
- 5s ribosomal rna (38 kDa, RNA from Oryctolagus cuniculus)
- El20 (20 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l29 (24 kDa, Protein from Oryctolagus cuniculus)
- Magnesium ion (24 Da, Ligand)
- Ul3 (46 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l15 (24 kDa, Protein from Oryctolagus cuniculus)
- Ul2 (26 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle receptor subunit beta (29 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l14 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l13 (24 kDa, Protein from Oryctolagus cuniculus)
- Signal recognition particle 19 kda protein (16 kDa, Protein from Homo sapiens)
- 60s ribosomal protein l5 (34 kDa, Protein from Oryctolagus cuniculus)
- Ul13 (23 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein el40 (6 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal proteins (Complex from Oryctolagus cuniculus)
- Signal recognition particle subunit srp72 (74 kDa, Protein from Homo sapiens)
- El38 (8 kDa, Protein from Oryctolagus cuniculus)
Ribosome nascent chain in complex with SecA
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6s0k
Q-score: 0.48
Wang S, Jomaa A, Jaskolowski M, Yang CI, Ban N, Shan SO
Nat Struct Mol Biol (2019) 26 pp. 919-929 [ DOI: doi:10.1038/s41594-019-0297-8 Pubmed: 31570874 ]
- Cytoskeleton protein rodz (5 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
- Seca (Complex from Escherichia coli)
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
- Trna-cca (894 Da, RNA from Escherichia coli)
- Nascent chain (Complex from Escherichia coli)
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
- Ribosome nascent chain in complex with seca (2 MDa, Complex)
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
- 23s ribosomal rna (934 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
- Magnesium ion (24 Da, Ligand)
- Protein translocase subunit seca (95 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
- Ribosome (Complex from Escherichia coli)
- 50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
Structure of a prehandover mammalian ribosomal SRP and SRP receptor targeting complex
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 6frk
Q-score: 0.363
Kobayashi K, Jomaa A, Lee JH, Chandrasekar S, Boehringer D, Shan SO, Ban N
Science (2018) 360 pp. 323-327 [ DOI: doi:10.1126/science.aar7924 Pubmed: 29567807 ]
- Signal recognition particle 54 kda protein (55 kDa, Protein from Dog)
- Ribosomal protein ul22 (17 kDa, Protein from Rabbit)
- Ribosomal protein el32 (15 kDa, Protein from Rabbit)
- Ribosomal protein ul4 (41 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp68 (65 kDa, Protein from Dog)
- Translating ribosome bound to srp and srp receptor (Complex)
- Ribosomal protein l8 (26 kDa, Protein from Rabbit)
- Ribosomal protein l23 (13 kDa, Protein from Rabbit)
- Ribosomal protein el6 (27 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp19 (12 kDa, Protein from Dog)
- Signal recognition particle 9 kda protein (8 kDa, Protein from Dog)
- Ribosomal protein el28 (14 kDa, Protein from Rabbit)
- Ribosomal protein el18 (21 kDa, Protein from Rabbit)
- Ribosomal protein ul23 (13 kDa, Protein from Rabbit)
- Ribosome (Complex from Oryctolagus cuniculus)
- Ribosomal protein ul6 (21 kDa, Protein from Rabbit)
- Zinc ion (65 Da, Ligand)
- Ribosomal protein el30 (10 kDa, Protein from Rabbit)
- Signal sequence (Complex from Saccharomyces cerevisiae)
- Ribosomal protein el8 (27 kDa, Protein from Rabbit)
- Srp receptor alpha subunit (72 kDa, Protein from Oryctolagus cuniculus)
- 60s ribosomal protein l27 (15 kDa, Protein from Rabbit)
- Trna (24 kDa, RNA from Rabbit)
- Canis lupus familiaris rna, 7sl, cytoplasmic 1 (rn7sl1), srp rna (96 kDa, RNA from Canis lupus familiaris)
- Ribosomal protein ul18 (33 kDa, Protein from Rabbit)
- Srp receptor (Complex from Oryctolagus cuniculus)
- Ribosomal protein el22 (11 kDa, Protein from Rabbit)
- Ribosomal protein el41 (3 kDa, Protein from Rabbit)
- Ribosomal protein el42 (12 kDa, Protein from Rabbit)
- Ribosomal protein el20 (20 kDa, Protein from Rabbit)
- 60s acidic ribosomal protein p0 (22 kDa, Protein from Rabbit)
- Signal recognition particle subunit srp72,signal recognition particle subunit srp72,signal recognition particle subunit srp72 (67 kDa, Protein from Dog)
- Srp receptor beta subunit (23 kDa, Protein from Oryctolagus cuniculus)
- Ribosomal protein l12 (17 kDa, Protein from Rabbit)
- Ribosomal protein el39 (6 kDa, Protein from Rabbit)
- Ribosomal protein ul3 (44 kDa, Protein from Rabbit)
- Ribosomal protein ul5 (19 kDa, Protein from Rabbit)
- 5s ribosomal rna (38 kDa, RNA from Rabbit)
- Ribosomal protein el13 (24 kDa, Protein from Rabbit)
- Ribosomal protein l15 (24 kDa, Protein from Rabbit)
- Ribosomal protein el14 (16 kDa, Protein from Rabbit)
- Ribosomal protein el19 (21 kDa, Protein from Rabbit)
- Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
- Signal recognition particle 14 kda protein (12 kDa, Protein from Dog)
- Srp (Complex from Canis lupus familiaris)
- 5.8s ribosomal rna (50 kDa, RNA from Rabbit)
- Ribosomal protein el36 (11 kDa, Protein from Rabbit)
- Ribosomal protein ul15 (16 kDa, Protein from Rabbit)
- Signal sequence (1 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein ul24 (15 kDa, Protein from Rabbit)
- 28s ribosomal rna (1 MDa, RNA from Rabbit)
- Ribosomal protein l37 (10 kDa, Protein from Rabbit)
- Ribosomal protein ul13 (23 kDa, Protein from Rabbit)
- Guanosine-5'-triphosphate (523 Da, Ligand)
- Ribosomal protein el34 (12 kDa, Protein from Rabbit)
- Ribosomal protein ul29 (14 kDa, Protein from Rabbit)
- Ribosomal protein el40 (6 kDa, Protein from Rabbit)
- Magnesium ion (24 Da, Ligand)
- Ribosomal protein el24 (7 kDa, Protein from Rabbit)
- Ribosomal protein el33 (12 kDa, Protein from Rabbit)
- 60s ribosomal protein l29 (8 kDa, Protein from Rabbit)
- Ribosomal protein el21 (18 kDa, Protein from Rabbit)
- Ribosomal protein el31 (12 kDa, Protein from Rabbit)
- Ribosomal protein ul16 (24 kDa, Protein from Rabbit)
- Ribosomal protein el38 (8 kDa, Protein from Rabbit)
- Ribosomal protein ul30 (26 kDa, Protein from Rabbit)
- Ribosomal protein el43 (10 kDa, Protein from Rabbit)