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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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perform basic research in molecular biology

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offer vital services to scientists in the member states

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scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"Ribosomal protein L27" AND author_orcid:"0000-0002-9119-9136" AND author_name:"B"

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EMD-10791

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70S initiation complex with assigned rRNA modifications from Staphylococcus aureus

Release date: Jan. 27, 2021
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 6yef
Q-score: 0.569

Golubev A, Fatkhullin B, Khusainov I, Jenner L, Gabdulkhakov A, Validov S, Yusupova G, Yusupov M, Usachev K

FEBS Lett (2020) 594 pp. 3551-3567 [ DOI: doi:10.1002/1873-3468.13915 Pubmed: 32852796 ]

Sample:

P-site trna (25 kDa, RNA from Escherichia coli DH5[alpha])
30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
E-site trna (Cellular component from Escherichia coli DH5[alpha])
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosomal protein us10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
23s and 5s rrna, 50s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Potassium ion (39 Da, Ligand)
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s rrna, 30s ribosomal subunit (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Magnesium ion (24 Da, Ligand)
30s ribosomal protein s14 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Mrna (9 kDa, RNA from synthetic construct)
50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s rrna (503 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
70s ribosome (Complex)
30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Mrna (Complex from synthetic construct)

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EMD-10212

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Cryo-EM structure of 50S-RsfS complex from Staphylococcus aureus

Release date: April 8, 2020
Resolution: 3.23 Å
EM Method: Single-particle
Fitted PDBs: 6sj6
Q-score: 0.48

Khusainov I, Fatkhullin B, Pellegrino S, Bikmullin A, Liu WT, Gabdulkhakov A, Shebel AA, Golubev A, Zeyer D, Trachtmann N, Sprenger GA, Validov S, Usachev K, Yusupova G, Yusupov M

Nat Commun (2020) 11 pp. 1656-1656 [ Pubmed: 32245971 DOI: doi:10.1038/s41467-020-15517-0 ]

Sample:

50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Potassium ion (39 Da, Ligand)
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal subunit complex with stress induced ribosome silencing factor rsfs from staphylococcus aureus (1 MDa, Complex)
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Magnesium ion (24 Da, Ligand)
50s ribosomal subunit (Cellular component from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosomal silencing factor rsfs (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosomal silencing factor rsfs (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))

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EMD-3624

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Hibernating ribosome from Staphylococcus aureus (Unrotated state)

Release date: June 28, 2017
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5nd8
Q-score: 0.384

Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y

EMBO J (2017) 36 pp. 2073-2087 [ DOI: doi:10.15252/embj.201696105 Pubmed: 28645916 ]

Sample:

30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Hibernating ribosome from staphylococcus aureus (unrotated state) (Complex from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosome hibernation promotion factor (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosome hibernation promotion factor (Complex from Staphylococcus aureus (strain NCTC 8325))
23s ribosomal rna (945 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Hibernating ribosome from staphylococcus aureus (unrotated state) (2 MDa, Complex)
30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s ribosomal rna (500 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))

[Show more]

EMD-3625

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Hibernating ribosome from Staphylococcus aureus (Rotated state)

Release date: June 28, 2017
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5nd9
Q-score: 0.386

Khusainov I, Vicens Q, Ayupov R, Usachev K, Myasnikov A, Simonetti A, Validov S, Kieffer B, Yusupova G, Yusupov M, Hashem Y

EMBO J (2017) 36 pp. 2073-2087 [ DOI: doi:10.15252/embj.201696105 Pubmed: 28645916 ]

Sample:

30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Hibernating ribosome from staphylococcus aureus (unrotated state) (Complex from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosome hibernation promotion factor (22 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Ribosome hibernation promotion factor (Complex from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
Hibernating ribosome from staphylococcus aureus (unrotated state) (2 MDa, Complex)
30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
16s ribosomal rna (503 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
23s ribosomal rna (946 kDa, RNA from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))
30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus (strain NCTC 8325))

[Show more]

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EMDB [4]

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