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EMBL

was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

Research:

perform basic research in molecular biology

Services:

offer vital services to scientists in the member states

Training

scientists, students and visitors at all levels

Transfer

and development of technology

Develop

new instruments and methods

Integrating

life science research in Europe

More about EMBL

Six sites

represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

Grenoble

Structural biology

Hamburg

Structural biology

Heidelberg

Main laboratory

Hinxton

EMBL-EBI: European Bioinformatics Institute

Rome

Epigenetics and neurobiology

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sample_name:"Ribosomal protein L27" AND xref_links:"alphafold" AND microscope_name:"FEI TECNAI F30"

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EMD-0661

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70S Elongation Competent Ribosome

Release date: May 29, 2019
Resolution: 3.9 Å
EM Method: Single-particle
Fitted PDBs: 6o9j
Q-score: 0.275

Kaledhonkar S, Fu Z, Caban K, Li W, Chen B, Sun M, Gonzalez Jr RL, Frank J

Nature (2019) 570 pp. 400-404 [ Pubmed: 31108498 DOI: doi:10.1038/s41586-019-1249-5 ]

Sample:

50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli )
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli )
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli )
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli )
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
16s rrna (495 kDa, RNA from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli )
50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli )
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli )
5s rrna (37 kDa, RNA from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli )
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli )
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli )
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
70s elongation competent ribosome (Complex from Escherichia coli)
P-trna (24 kDa, RNA from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
30s ribosomal protein s21 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli )
50s ribosomal protein l13 (15 kDa, Protein from Escherichia coli )
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli )
23s rrna (921 kDa, RNA from Escherichia coli)
30s ribosomal protein s5 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli )
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli )
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli )
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)

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EMD-0662

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70S initiation complex

Release date: May 29, 2019
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 6o9k
Q-score: 0.183

Kaledhonkar S, Fu Z, Caban K, Li W, Chen B, Sun M, Gonzalez Jr RL, Frank J

Nature (2019) 570 pp. 400-404 [ Pubmed: 31108498 DOI: doi:10.1038/s41586-019-1249-5 ]

Sample:

50s ribosomal protein l10 (12 kDa, Protein from Escherichia coli )
30s ribosomal protein s18 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli )
30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
Trna (24 kDa, RNA from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli )
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli )
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli )
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli)
30s ribosomal protein s14 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli )
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli )
30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli )
Translation initiation factor if-2 (54 kDa, Protein from Escherichia coli)
30s ribosomal protein s7 (16 kDa, Protein from Escherichia coli)
30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli )
16s rrna (498 kDa, RNA from Escherichia coli)
30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli )
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli)
23s rrna (925 kDa, RNA from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli )
30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli )
30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
70s elongation competent ribosome (Complex from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli )
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli )
30s ribosomal protein s21 (6 kDa, Protein from Escherichia coli)
30s ribosomal protein s5 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli)
30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli)
30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli )
50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli )
Mrna (1 kDa, RNA from Escherichia coli)
30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli )

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EMD-8362

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Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3-Tif6-Lsg1 Complex

Release date: Feb. 8, 2017
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 5t62
Q-score: 0.477

Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW

EMBO J (2017) 36 pp. 854-868 [ DOI: doi:10.15252/embj.201696012 Pubmed: 28179369 ]

Sample:

60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae S288C)
Eukaryotic translation initiation factor 6 (28 kDa, Protein from Saccharomyces cerevisiae S288C)
Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
Tpa_inf: saccharomyces cerevisiae s288c chromosome xii, complete sequence (1 MDa, RNA from Saccharomyces cerevisiae S288C)
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
Potassium ion (39 Da, Ligand)
60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l24-a (17 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal export protein nmd3 (59 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
Water (18 Da, Ligand)
Large subunit gtpase 1 (71 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae S288C)
60s-nmd3-tif6-lsg1 complex with focus on nmd3 (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae S288C)
60s in complex with nmd3, lsg1, and tif6 (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae S288C)
5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
Ribosomal protein ul1 (18 kDa, Protein from Saccharomyces cerevisiae)
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae S288C)
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae S288C)
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae S288C)

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EMD-8368

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Nmd3 is a structural mimic of eIF5A, and activates the cpGTPase Lsg1 during 60S ribosome biogenesis: 60S-Nmd3 Complex

Release date: Feb. 8, 2017
Resolution: 4.2 Å
EM Method: Single-particle
Fitted PDBs: 5t6r
Q-score: 0.325

Malyutin AG, Musalgaonkar S, Patchett S, Frank J, Johnson AW

EMBO J (2017) 36 pp. 854-868 [ DOI: doi:10.15252/embj.201696012 Pubmed: 28179369 ]

Sample:

60s in complex with nmd3 (Complex from Saccharomyces cerevisiae)
60s ribosomal protein l10 (25 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l36-a (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l28 (16 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l24-a (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l20-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l19-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l42-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l6-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l26-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l16-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l29 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l33-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Maltose binding protein, 60s ribosomal export protein nmd3 fusion (103 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l4-a (39 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l39 (6 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l7-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l9-a (21 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l2-a (27 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l18-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Potassium ion (39 Da, Ligand)
60s ribosomal protein l30 (11 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l15-a (24 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l14-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l32 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
25s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l38 (8 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Water (18 Da, Ligand)
60s ribosomal protein l43-a (10 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l37-a (9 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l22-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l35-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l13-a (22 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Magnesium ion (24 Da, Ligand)
60s ribosomal protein l11-a (19 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ribosomal protein ul1 (17 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l8-a (28 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
60s ribosomal protein l17-a (20 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l34-a (13 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l27-a (15 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l21-a (18 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l23-a (14 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l5 (33 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))
60s ribosomal protein l31-a (12 kDa, Protein from Saccharomyces cerevisiae (strain ATCC 204508 / S288c))

[Show more]

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Showing 1 - 4 of 4. Page 1 of 1

Display: Statistics

Download

Select database:

EMDB [4]

Format:

Select the script type:

Shell (Unix-based) Batch (Windows-based)

Preview first 10

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