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was set up in 1974 as Europe’s flagship laboratory for the life sciences – an intergovernmental organisation with more than 80 independent research groups covering the spectrum of molecular biology:

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represent EMBL in Europe.

Barcelona

Tissue biology and disease modelling

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Structural biology

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sample_name:"Ribosomal protein L27" AND xref_links:"cath" AND author_name:"N"

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EMD-6789

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Large subunit of Mycobacterium smegmatis

Release date: Sept. 27, 2017
Resolution: 3.08 Å
EM Method: Single-particle
Fitted PDBs: 5xym
Q-score: 0.518

Li Z, Ge X, Zhang Y, Zheng L, Sanyal S, Gao N

Protein Cell (2018) 9 pp. 384-388 [ DOI: doi:10.1007/s13238-017-0456-9 Pubmed: 28875450 ]

Sample:

50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Uncharacterized protein bl37 (2 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Large subunit of mycobacterium smegmatis ribosome (Complex from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
5s rna (38 kDa, RNA from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
23s rna (1 MDa, RNA from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))

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EMD-3750

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Cryo-EM reconstruction of the large subunit of the Mycobacterium smegmatis ribosome

Release date: July 12, 2017
Resolution: 3.18 Å
EM Method: Single-particle
Fitted PDBs: 5o60
Q-score: 0.487

Hentschel J, Burnside C, Mignot I, Leibundgut M, Boehringer D, Ban N

Cell Rep (2017) 20 pp. 149-160 [ DOI: doi:10.1016/j.celrep.2017.06.029 Pubmed: 28683309 ]

Sample:

50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s large ribosomal subunit (Complex from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein bl37 (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Phenylalanine (165 Da, Ligand from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Trna cca-end acetylated (phe) (894 Da, RNA from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)

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EMD-8000

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RNC-SRP-SR complex early state

Release date: Jan. 27, 2016
Resolution: 3.7 Å
EM Method: Single-particle
Fitted PDBs: 5gad
Q-score: 0.371

Jomaa A, Boehringer D, Leibundgut M, Ban N

Nat Commun (2016) 7 pp. 10471-10471 [ Pubmed: 26804923 DOI: doi:10.1038/ncomms10471 ]

Sample:

50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
Phosphoaminophosphonic acid-guanylate ester (522 Da, Ligand)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
Ribosome nascent chain complex with srp-sr in the early state (2 MDa, Complex)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
Signal recognition particle receptor ftsy (54 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
1a9l ss (1 kDa, Protein from Escherichia coli)
Signal recognition particle protein ffh (47 kDa, Protein from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Trna ccaend (894 Da, RNA from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
Esrp 4.5s rna (36 kDa, RNA from Escherichia coli)

[Show more]

EMD-8001

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RNC in complex with a translocating SecYEG

Release date: Jan. 27, 2016
Resolution: 3.33 Å
EM Method: Single-particle
Fitted PDBs: 5gae
Q-score: 0.441

Jomaa A, Boehringer D, Leibundgut M, Ban N

Nat Commun (2016) 7 pp. 10471-10471 [ Pubmed: 26804923 DOI: doi:10.1038/ncomms10471 ]

Sample:

50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
Trna cca end (5'-r(p*cp*cp*a)-3') (894 Da, RNA from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
Protein translocase subunit secy (48 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
Protein translocase subunit sece (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
Ribosome nascent chain secyeg complex (2 MDa, Complex from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli (strain K12))
Magnesium ion (24 Da, Ligand)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)
Secg (2 kDa, Protein from Escherichia coli)

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EMD-8003

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RNC in complex with SRP-SR in the closed state

Release date: Jan. 27, 2016
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5gag
Q-score: 0.41

Jomaa A, Boehringer D, Leibundgut M, Ban N

Nat Commun (2016) 7 pp. 10471-10471 [ Pubmed: 26804923 DOI: doi:10.1038/ncomms10471 ]

Sample:

50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli (strain K12))
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
Ribosome nascent chain complex with srp-sr in the closed state (2 MDa, Complex)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
1a9l ss (1 kDa, Protein from Escherichia coli)
Signal recognition particle protein ffh (47 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Srp 4.5s rna (36 kDa, RNA from Escherichia coli)
Trna ccaend (894 Da, RNA from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)

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EMD-8004

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RNC in complex with SRP with detached NG domain

Release date: Jan. 27, 2016
Resolution: 3.8 Å
EM Method: Single-particle
Fitted PDBs: 5gah
Q-score: 0.388

Jomaa A, Boehringer D, Leibundgut M, Ban N

Nat Commun (2016) 7 pp. 10471-10471 [ Pubmed: 26804923 DOI: doi:10.1038/ncomms10471 ]

Sample:

50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli)
50s ribosomal protein l9 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli)
50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli)
50s ribosomal protein l15 (15 kDa, Protein from Escherichia coli)
50s ribosomal protein l10 (17 kDa, Protein from Escherichia coli)
50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli)
50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli)
50s ribosomal protein l17 (14 kDa, Protein from Escherichia coli)
50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli)
23s rrna (941 kDa, RNA from Escherichia coli)
50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli)
50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli)
50s ribosomal protein l33 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l23 (11 kDa, Protein from Escherichia coli)
50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli)
50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli)
50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli)
50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli)
1a9l ss (1 kDa, Protein from Escherichia coli)
Signal recognition particle protein ffh (48 kDa, Protein from Escherichia coli)
Magnesium ion (24 Da, Ligand)
Srp 4.5s rna (36 kDa, RNA from Escherichia coli)
Trna ccaend (894 Da, RNA from Escherichia coli)
50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli)
50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli)
Zinc ion (65 Da, Ligand)
50s ribosomal protein l11 (14 kDa, Protein from Escherichia coli)
Ribosome nascent chain complex with srp (ng-detached) (2 MDa, Complex)
50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli)
50s ribosomal protein l27 (9 kDa, Protein from Escherichia coli)
50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli)
5s rrna (38 kDa, RNA from Escherichia coli)
50s ribosomal protein l28 (9 kDa, Protein from Escherichia coli)

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Showing 1 - 6 of 6. Page 1 of 1

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Select database:

EMDB [6]

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