Structure of the translating Neurospora crassa ribosome arrested by cycloheximide
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 7r81
Q-score: 0.539
Shen L, Su Z, Yang K, Wu C, Becker T, Bell-Pedersen D, Zhang J, Sachs MS
PNAS (2021) 118 [ Pubmed: 34815343 DOI: doi:10.1073/pnas.2111862118 ]
- 60s ribosomal protein l4-a (38 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l44 (11 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l34 (13 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (17 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l29 (7 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s7 (22 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l43 (10 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s22 (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l36 (11 kDa, Protein from Neurospora crassa)
- Trna (Complex from Neurospora crassa)
- 40s ribosomal protein s14 (us11) (16 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l10 (25 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l13 (23 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l8 (29 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l25 (17 kDa, Protein from Neurospora crassa)
- Ubiquitin-40s ribosomal protein s27a (17 kDa, Protein from Neurospora crassa)
- 5s rrna (38 kDa, RNA from Neurospora crassa)
- 40s ribosomal protein s4 (29 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l39 (6 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l22 (14 kDa, Protein from Neurospora crassa)
- Cytoplasmic ribosomal protein 10 (28 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l17 (20 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s19 (16 kDa, Protein from Neurospora crassa)
- Spermidine (145 Da, Ligand)
- 40s ribosomal protein s23 (15 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l6 (22 kDa, Protein from Neurospora crassa)
- Mrna (5 kDa, RNA from Neurospora crassa)
- 40s ribosomal protein s20 (13 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s9 (21 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l23 (14 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s1 (29 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s12 (16 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein (14 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s17 (16 kDa, Protein from Neurospora crassa)
- Hypothetical protein ncu16635 (el41) (3 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l18 (20 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s16 (15 kDa, Protein from Neurospora crassa)
- Mrna (Complex from Neurospora crassa)
- 60s ribosomal protein l5 (34 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l32 (15 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l15 (24 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s30 (6 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s6 (27 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s18 (17 kDa, Protein from Neurospora crassa)
- Probable 40s ribosomal protein s10-b (18 kDa, Protein from Neurospora crassa)
- 4-{(2r)-2-[(1s,3s,5s)-3,5-dimethyl-2-oxocyclohexyl]-2-hydroxyethyl}piperidine-2,6-dione (281 Da, Ligand)
- 40s ribosomal protein s26e (13 kDa, Protein from Neurospora crassa)
- 5.8s rrna (50 kDa, RNA from Neurospora crassa)
- Trna (24 kDa, RNA from Neurospora crassa)
- 60s ribosomal protein l35 (14 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l11 (20 kDa, Protein from Neurospora crassa)
- Structure of the translating neurospora crassa ribosome arrested by cycloheximide (Complex)
- 60s ribosomal protein l30 (11 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s13 (16 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l24 (17 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l3 (44 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l9 (21 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l20 (20 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l28 (16 kDa, Protein from Neurospora crassa)
- 26s rrna (1 MDa, RNA from Neurospora crassa)
- Ribosomal protein l37 (10 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s2 (28 kDa, Protein from Neurospora crassa)
- Ribosomal protein l14 (15 kDa, Protein from Neurospora crassa)
- Ribosomal protein l26 (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s8 (23 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s21 (9 kDa, Protein from Neurospora crassa)
- Ribosomal_l28e domain-containing protein (16 kDa, Protein from Neurospora crassa)
- Ribosomal protein l19 (22 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s25 (10 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l40 (6 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l7 (28 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2 (27 kDa, Protein from Neurospora crassa)
- 18s rrna (578 kDa, RNA from Neurospora crassa)
- 40s ribosomal subunit (Complex from Neurospora crassa)
- 40s ribosomal protein s28 (7 kDa, Protein from Neurospora crassa)
- 60s ribosomal subunit (Complex from Neurospora crassa)
- 60s ribosomal protein l33 (12 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s0 (31 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s27 (8 kDa, Protein from Neurospora crassa)
- Guanine nucleotide-binding protein subunit beta-like protein (35 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s24 (15 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s11 (18 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l16 (26 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l38 (9 kDa, Protein from Neurospora crassa)
- 40s ribosomal protein s29 (6 kDa, Protein from Neurospora crassa)
- Nascent peptide (Complex from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- 40s ribosomal protein s5 (23 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l27 (el27) (15 kDa, Protein from Neurospora crassa)
- Ribosomal protein srp1 (18 kDa, Protein from Neurospora crassa)
- Nascent peptide (358 Da, Protein from Neurospora crassa)
The structure of the mitoribosome from Neurospora crassa in the P/E tRNA bound state
Resolution: 2.99 Å
EM Method: Single-particle
Fitted PDBs: 6ywe
Q-score: 0.575
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ DOI: doi:10.1038/s41467-020-18830-w Pubmed: 33056988 ]
- Related to ribosomal protein s15 (mitochondrial) (35 kDa, Protein from Neurospora crassa)
- Bs1m (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein s19/s15 (10 kDa, Protein from Neurospora crassa)
- Ms27 (44 kDa, Protein from Neurospora crassa)
- Bs16m (12 kDa, Protein from Neurospora crassa)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa)
- Ul17m (22 kDa, Protein from Neurospora crassa)
- Potassium ion (39 Da, Ligand)
- Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l30 (18 kDa, Protein from Neurospora crassa)
- Ul13m (20 kDa, Protein from Neurospora crassa)
- Ribosomal protein l14 (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml49, mitochondrial (23 kDa, Protein from Neurospora crassa)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa)
- 23s rrna (1 MDa, RNA from Neurospora crassa)
- Ml41 (11 kDa, Protein from Neurospora crassa)
- Ms46 (43 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa)
- Trna p/e state (23 kDa, RNA from Neurospora crassa)
- Related to ribosomal protein yml11, mitochondrial (37 kDa, Protein from Neurospora crassa)
- Mitochondrial 37s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml20, mitochondrial (25 kDa, Protein from Neurospora crassa)
- Ml40 (41 kDa, Protein from Neurospora crassa)
- Bs21m (25 kDa, Protein from Neurospora crassa)
- Zinc ion (65 Da, Ligand)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Ml54 (23 kDa, Protein from Neurospora crassa)
- Spermine (202 Da, Ligand)
- 16s rrna (600 kDa, RNA from Neurospora crassa)
- Ribonuclease iii (48 kDa, Protein from Neurospora crassa)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2, mitochondrial (42 kDa, Protein from Neurospora crassa)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- Related to 60s ribosomal protein l2 (mitochondrial) (49 kDa, Protein from Neurospora crassa)
- Ribosomal protein s5 (58 kDa, Protein from Neurospora crassa)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (15 kDa, Protein from Neurospora crassa)
- Protein fyv4, mitochondrial (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s18 (28 kDa, Protein from Neurospora crassa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mrp-l46 domain-containing protein (41 kDa, Protein from Neurospora crassa)
- Ms33 (12 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l5, mitochondrial (39 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa)
- Pebp-like protein (50 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa)
- Ml67 (32 kDa, Protein from Neurospora crassa)
- Us9m (35 kDa, Protein from Neurospora crassa)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa)
- Ml50 (49 kDa, Protein from Neurospora crassa)
- 30s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa)
- Ms26 (35 kDa, Protein from Neurospora crassa)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l1, mitochondrial (33 kDa, Protein from Neurospora crassa)
- Probable ribosomal protein yml44, mitochondrial (11 kDa, Protein from Neurospora crassa)
- Translational machinery component (42 kDa, Protein from Neurospora crassa)
- Bl19m (28 kDa, Protein from Neurospora crassa)
- Ml49 (18 kDa, Protein from Neurospora crassa)
- Ms45 (39 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml36, mitochondrial (23 kDa, Protein from Neurospora crassa)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml32 (mitochondrial),mitochondrial ribosomal protein subunit l32 (14 kDa, Protein from Neurospora crassa)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa)
- Manganese and iron superoxide dismutase (34 kDa, Protein from Neurospora crassa)
- Bl33m (7 kDa, Protein from Neurospora crassa)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa)
- Ul11m (16 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein s5 (mitochondrial) (53 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l16, mitochondrial (27 kDa, Protein from Neurospora crassa)
- Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- S4 rna-binding domain-containing protein (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (18 kDa, Protein from Neurospora crassa)
- Mrna (3 kDa, RNA from Neurospora crassa)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Us8m (17 kDa, Protein from Neurospora crassa)
- Bl28m (31 kDa, Protein from Neurospora crassa)
- Ul23m (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s6 (13 kDa, Protein from Neurospora crassa)
- Mitoribosome of neurospora crassa in the p/e state (Complex from Neurospora crassa)
- Related to ribosomal protein l3, mitochondrial (41 kDa, Protein from Neurospora crassa)
- Us17m (18 kDa, Protein from Neurospora crassa)
- If1 (10 kDa, Protein from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- Probable ribosomal protein s13 (13 kDa, Protein from Neurospora crassa)
- Ul6m (28 kDa, Protein from Neurospora crassa)
The structure of the mitoribosome from Neurospora crassa with bound tRNA at the P-site
Resolution: 3.05 Å
EM Method: Single-particle
Fitted PDBs: 6ywy
Q-score: 0.56
Itoh Y, Naschberger A, Mortezaei N, Herrmann JM, Amunts A
Nat Commun (2020) 11 pp. 5187-5187 [ DOI: doi:10.1038/s41467-020-18830-w Pubmed: 33056988 ]
- Related to ribosomal protein s15 (mitochondrial) (35 kDa, Protein from Neurospora crassa)
- Bs1m (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein s19/s15 (10 kDa, Protein from Neurospora crassa)
- Ms27 (44 kDa, Protein from Neurospora crassa)
- Bs16m (12 kDa, Protein from Neurospora crassa)
- P-site-trna (23 kDa, RNA from Neurospora crassa)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Mitochondrial ribosomal protein dap3 (51 kDa, Protein from Neurospora crassa)
- Ul17m (22 kDa, Protein from Neurospora crassa)
- Potassium ion (39 Da, Ligand)
- Poly-peptide (515 Da, Protein from Neurospora crassa)
- Ribosomal protein l15 (33 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l30 (18 kDa, Protein from Neurospora crassa)
- Ul13m (20 kDa, Protein from Neurospora crassa)
- Ribosomal protein l14 (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml49, mitochondrial (23 kDa, Protein from Neurospora crassa)
- Mito ribosomal protein s2 (47 kDa, Protein from Neurospora crassa)
- 23s rrna (1 MDa, RNA from Neurospora crassa)
- Ml41 (11 kDa, Protein from Neurospora crassa)
- Ms46 (43 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l34, mitochondrial (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml11, mitochondrial (37 kDa, Protein from Neurospora crassa)
- Mitochondrial 37s ribosomal protein mrp2 (13 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml20, mitochondrial (25 kDa, Protein from Neurospora crassa)
- Ml40 (41 kDa, Protein from Neurospora crassa)
- Bs21m (25 kDa, Protein from Neurospora crassa)
- Zinc ion (65 Da, Ligand)
- 54s ribosomal protein l4, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Ml54 (23 kDa, Protein from Neurospora crassa)
- Spermine (202 Da, Ligand)
- 16s rrna (600 kDa, RNA from Neurospora crassa)
- Ribonuclease iii (48 kDa, Protein from Neurospora crassa)
- Ml46 (41 kDa, Protein from Neurospora crassa)
- Kow domain-containing protein (45 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l2, mitochondrial (42 kDa, Protein from Neurospora crassa)
- Mrna (3 kDa, RNA from Neurospora crassa)
- Ribosomal_l9 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- Related to 60s ribosomal protein l2 (mitochondrial) (49 kDa, Protein from Neurospora crassa)
- Ribosomal protein s5 (58 kDa, Protein from Neurospora crassa)
- Duf1713 domain-containing protein (38 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (15 kDa, Protein from Neurospora crassa)
- Protein fyv4, mitochondrial (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s18 (28 kDa, Protein from Neurospora crassa)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Ms33 (12 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l5, mitochondrial (39 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l4, variant (36 kDa, Protein from Neurospora crassa)
- Pebp-like protein (50 kDa, Protein from Neurospora crassa)
- L51_s25_ci-b8 domain-containing protein (22 kDa, Protein from Neurospora crassa)
- Ml67 (32 kDa, Protein from Neurospora crassa)
- Us9m (35 kDa, Protein from Neurospora crassa)
- Mitochondrial large ribosomal subunit (41 kDa, Protein from Neurospora crassa)
- Ml50 (49 kDa, Protein from Neurospora crassa)
- 30s ribosomal protein s10, mitochondrial (30 kDa, Protein from Neurospora crassa)
- Ms26 (35 kDa, Protein from Neurospora crassa)
- Ribosomal protein (13 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein s24, mitochondrial (44 kDa, Protein from Neurospora crassa)
- 60s ribosomal protein l1, mitochondrial (33 kDa, Protein from Neurospora crassa)
- Probable ribosomal protein yml44, mitochondrial (11 kDa, Protein from Neurospora crassa)
- Translational machinery component (42 kDa, Protein from Neurospora crassa)
- Bl19m (28 kDa, Protein from Neurospora crassa)
- Ml49 (18 kDa, Protein from Neurospora crassa)
- Ms45 (39 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml36, mitochondrial (23 kDa, Protein from Neurospora crassa)
- 54s ribosomal protein l31, mitochondrial (13 kDa, Protein from Neurospora crassa)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Neurospora crassa)
- Manganese and iron superoxide dismutase (34 kDa, Protein from Neurospora crassa)
- Bl33m (7 kDa, Protein from Neurospora crassa)
- Rnase iii domain-containing protein (29 kDa, Protein from Neurospora crassa)
- 37s ribosomal protein mrp10, mitochondrial (9 kDa, Protein from Neurospora crassa)
- Ul11m (16 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein yml32 (mitochondrial) (14 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein s5 (mitochondrial) (53 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l16, mitochondrial (27 kDa, Protein from Neurospora crassa)
- Mitoc_ml59 domain-containing protein (18 kDa, Protein from Neurospora crassa)
- Ribosomal_s7 domain-containing protein (33 kDa, Protein from Neurospora crassa)
- S4 rna-binding domain-containing protein (51 kDa, Protein from Neurospora crassa)
- Ribosomal protein s12 (18 kDa, Protein from Neurospora crassa)
- Mitoribosome of neurospora crassa in the trna bound state (p-site). (Complex from Neurospora crassa)
- 37s ribosomal protein s25, mitochondrial (29 kDa, Protein from Neurospora crassa)
- Us8m (17 kDa, Protein from Neurospora crassa)
- Bl28m (31 kDa, Protein from Neurospora crassa)
- Ul23m (26 kDa, Protein from Neurospora crassa)
- Ribosomal protein s6 (13 kDa, Protein from Neurospora crassa)
- Related to ribosomal protein l3, mitochondrial (41 kDa, Protein from Neurospora crassa)
- Us17m (18 kDa, Protein from Neurospora crassa)
- If1 (10 kDa, Protein from Neurospora crassa)
- Magnesium ion (24 Da, Ligand)
- Probable ribosomal protein s13 (13 kDa, Protein from Neurospora crassa)
- Ul6m (28 kDa, Protein from Neurospora crassa)