Enp1TAP-S21_A population of yeast small ribosomal subunit precursors depleted of rpS21/eS21
Resolution: 2.9 Å
EM Method: Single-particle
Fitted PDBs: 8c00
Q-score: 0.535
Poll G, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2023) 18 pp. e0283698-e0283698 [ Pubmed: 36996028 DOI: doi:10.1371/journal.pone.0283698 ]
- 40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae)
- Rps5 (25 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s15 (16 kDa, Protein from Saccharomyces cerevisiae)
- 18s rrna precursor (579 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s1-a (28 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
- Ribosome biogenesis protein tsr1 (90 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
- Essential nuclear protein 1 (55 kDa, Protein from Saccharomyces cerevisiae)
- Enp1-tap associated immature ribosomal particles from s. cerevisiae depleted of rps21/es21 (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s25-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
- Serine/threonine-protein kinase rio2 (49 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae)
Enp1TAP_A population of yeast small ribosomal subunit precursors, multibody refinement
Resolution: 2.7 Å
EM Method: Single-particle
Fitted PDBs: 8c01
Q-score: 0.569
Poll G, Griesenbeck J, Tschochner H, Milkereit P
PLoS One (2023) 18 pp. e0283698-e0283698 [ Pubmed: 36996028 DOI: doi:10.1371/journal.pone.0283698 ]
- 40s ribosomal protein s14-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s19-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s13 (17 kDa, Protein from Saccharomyces cerevisiae)
- Zinc ion (65 Da, Ligand)
- 40s ribosomal protein s11-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s18-a (17 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s4-a (29 kDa, Protein from Saccharomyces cerevisiae)
- Pre-rrna-processing protein pno1 (30 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s27-a (8 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s15 (16 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s21-a (9 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s22-a (14 kDa, Protein from Saccharomyces cerevisiae)
- 20s-pre-rrna d-site endonuclease nob1 (51 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s17-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 18s rrna precursor (581 kDa, RNA from Saccharomyces cerevisiae)
- 40s ribosomal protein s5 (25 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s1-a (28 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s30-a (7 kDa, Protein from Saccharomyces cerevisiae)
- Ribosome biogenesis protein tsr1 (90 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s6-a (27 kDa, Protein from Saccharomyces cerevisiae)
- Essential nuclear protein 1 (55 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s25-a (12 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s23-a (16 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s9-a (22 kDa, Protein from Saccharomyces cerevisiae)
- Enp1-tap associated immature ribosomal particles from s. cerevisiae (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s8-a (22 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s2 (27 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s16-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s0-a (28 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s7-a (21 kDa, Protein from Saccharomyces cerevisiae)
- Serine/threonine-protein kinase rio2 (49 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s24-a (15 kDa, Protein from Saccharomyces cerevisiae)
- 40s ribosomal protein s28-a (7 kDa, Protein from Saccharomyces cerevisiae)
Yeast mitochondrial small subunit assembly intermediate (State 2)
Resolution: 3.13 Å
EM Method: Single-particle
Fitted PDBs: 8d8k
Q-score: 0.508
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ Pubmed: 36482135 DOI: doi:10.1038/s41586-022-05621-0 ]
- 37s ribosomal protein pet123, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- Probable s-adenosyl-l-methionine-dependent rna methyltransferase rsm22, mitochondrial (72 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s23, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s35, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein var1, mitochondrial (47 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s25, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp21, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp1, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- Mitochondrial 37s ribosomal protein s27 (12 kDa, Protein from Saccharomyces cerevisiae)
- 15s ribosomal rna (549 kDa, RNA from Saccharomyces cerevisiae)
- 37s ribosomal protein s8, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s16, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s5, mitochondrial (34 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein rsm18, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s26, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp10, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s19, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein nam9, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- Protein fyv4, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- 37s ribosomal protein mrp4, mitochondrial (44 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s18, mitochondrial (24 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence (8 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s17, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- Yeast mitochondrial small subunit assembly intermediate (state 2) (1 MDa, Complex from Saccharomyces cerevisiae)
- 37s ribosomal protein s28, mitochondrial (33 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein sws2, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp51, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp13, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- 37s ribosomal protein s10, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp17, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp2, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s9, mitochondrial (31 kDa, Protein from Saccharomyces cerevisiae)
- Magnesium ion (24 Da, Ligand)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Mitochondrial group i intron splicing factor ccm1 (101 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s7, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- Mrps12 isoform 1 (16 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s24, mitochondrial (37 kDa, Protein from Saccharomyces cerevisiae)
Human mitochondrial small subunit assembly intermediate (State A)
Resolution: 2.66 Å
EM Method: Single-particle
Fitted PDBs: 8csp
Q-score: 0.548
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ Pubmed: 36482135 DOI: doi:10.1038/s41586-022-05621-0 ]
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
- 12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
- Gtpase era, mitochondrial (48 kDa, Protein from Homo sapiens)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
- Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
- Nitric oxide-associated protein 1 (78 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
- Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from Homo sapiens)
- S-adenosylmethionine (398 Da, Ligand)
- Human mitochondrial small subunit assembly intermediate, state a (1 MDa, Complex from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
- Malonyl-coa-acyl carrier protein transacylase, mitochondrial (43 kDa, Protein from Homo sapiens)
Human mitochondrial small subunit assembly intermediate (State B)
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 8csq
Q-score: 0.566
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ Pubmed: 36482135 DOI: doi:10.1038/s41586-022-05621-0 ]
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from Homo sapiens)
- Aurora kinase a-interacting protein (22 kDa, Protein from Homo sapiens)
- 12s mitochondrial rrna (306 kDa, RNA from Homo sapiens)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from Homo sapiens)
- Gtpase era, mitochondrial (48 kDa, Protein from Homo sapiens)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from Homo sapiens)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from Homo sapiens)
- Human mitochondrial small subunit assembly intermediate, state b (1 MDa, Complex from Homo sapiens)
- Potassium ion (39 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from Homo sapiens)
- Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from Homo sapiens)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from Homo sapiens)
- Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from Homo sapiens)
- S-adenosylmethionine (398 Da, Ligand)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from Homo sapiens)
- Iron/sulfur cluster (351 Da, Ligand)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from Homo sapiens)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from Homo sapiens)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from Homo sapiens)
- Malonyl-coa-acyl carrier protein transacylase, mitochondrial (43 kDa, Protein from Homo sapiens)
Human mitochondrial small subunit assembly intermediate (State C)
Resolution: 2.54 Å
EM Method: Single-particle
Fitted PDBs: 8csr
Q-score: 0.563
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ Pubmed: 36482135 DOI: doi:10.1038/s41586-022-05621-0 ]
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from human)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from human)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from human)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from human)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from human)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from human)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from human)
- Malonyl-coa-acyl carrier protein transacylase, mitochondrial (43 kDa, Protein from human)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from human)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from human)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from human)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from human)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from human)
- Potassium ion (39 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 12s mitochondrial rrna (306 kDa, RNA from human)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from human)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from human)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from human)
- Water (18 Da, Ligand)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from human)
- Human mitochondrial small subunit assembly intermediate, state c (1 MDa, Complex from Homo sapiens)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from human)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from human)
- Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from human)
- Putative ribosome-binding factor a, mitochondrial (38 kDa, Protein from human)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from human)
- S-adenosylmethionine (398 Da, Ligand)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from human)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from human)
- Iron/sulfur cluster (351 Da, Ligand)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from human)
- Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from human)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Aurora kinase a-interacting protein (22 kDa, Protein from human)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from human)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from human)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from human)
Human mitochondrial small subunit assembly intermediate (State D)
Resolution: 2.36 Å
EM Method: Single-particle
Fitted PDBs: 8css
Q-score: 0.576
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ Pubmed: 36482135 DOI: doi:10.1038/s41586-022-05621-0 ]
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from human)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from human)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from human)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from human)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from human)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from human)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from human)
- Malonyl-coa-acyl carrier protein transacylase, mitochondrial (43 kDa, Protein from human)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from human)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from human)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from human)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from human)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from human)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from human)
- Potassium ion (39 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from human)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from human)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from human)
- Water (18 Da, Ligand)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from human)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from human)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from human)
- Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from human)
- Putative ribosome-binding factor a, mitochondrial (38 kDa, Protein from human)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from human)
- S-adenosylmethionine (398 Da, Ligand)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from human)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from human)
- Iron/sulfur cluster (351 Da, Ligand)
- Human mitochondrial small subunit assembly intermediate, state d (1 MDa, Complex from Homo sapiens)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from human)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Aurora kinase a-interacting protein (22 kDa, Protein from human)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from human)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from human)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from human)
- 12s mitochondrial rrna (306 kDa, RNA from human)
Human mitochondrial small subunit assembly intermediate (State E)
Resolution: 2.85 Å
EM Method: Single-particle
Fitted PDBs: 8cst
Q-score: 0.555
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ Pubmed: 36482135 DOI: doi:10.1038/s41586-022-05621-0 ]
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from human)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from human)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from human)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from human)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from human)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from human)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from human)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from human)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from human)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from human)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from human)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from human)
- Potassium ion (39 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from human)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from human)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from human)
- Human mitochondrial small subunit assembly intermediate, state e (1 MDa, Complex from Homo sapiens)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from human)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from human)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from human)
- Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from human)
- Putative ribosome-binding factor a, mitochondrial (38 kDa, Protein from human)
- 12s mitochondrial rrna (306 kDa, RNA from human)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from human)
- S-adenosylmethionine (398 Da, Ligand)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from human)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from human)
- Iron/sulfur cluster (351 Da, Ligand)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from human)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Aurora kinase a-interacting protein (22 kDa, Protein from human)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from human)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from human)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from human)
Human mitochondrial small subunit assembly intermediate (State C*)
Resolution: 3.03 Å
EM Method: Single-particle
Fitted PDBs: 8csu
Q-score: 0.519
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ Pubmed: 36482135 DOI: doi:10.1038/s41586-022-05621-0 ]
- 28s ribosomal protein s14, mitochondrial (15 kDa, Protein from human)
- Pentatricopeptide repeat domain-containing protein 3, mitochondrial (78 kDa, Protein from human)
- 28s ribosomal protein s6, mitochondrial (14 kDa, Protein from human)
- 28s ribosomal protein s26, mitochondrial (24 kDa, Protein from human)
- 28s ribosomal protein s2, mitochondrial (33 kDa, Protein from human)
- 28s ribosomal protein s23, mitochondrial (21 kDa, Protein from human)
- Fe2/s2 (inorganic) cluster (175 Da, Ligand)
- 28s ribosomal protein s34, mitochondrial (25 kDa, Protein from human)
- 28s ribosomal protein s11, mitochondrial (20 kDa, Protein from human)
- Nicotinamide-adenine-dinucleotide (663 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- 28s ribosomal protein s7, mitochondrial (28 kDa, Protein from human)
- 28s ribosomal protein s25, mitochondrial (20 kDa, Protein from human)
- 28s ribosomal protein s31, mitochondrial (45 kDa, Protein from human)
- 28s ribosomal protein s5, mitochondrial (48 kDa, Protein from human)
- Potassium ion (39 Da, Ligand)
- Guanosine-5'-diphosphate (443 Da, Ligand)
- 12s mitochondrial rrna (306 kDa, RNA from human)
- 28s ribosomal protein s27, mitochondrial (47 kDa, Protein from human)
- 28s ribosomal protein s22, mitochondrial (41 kDa, Protein from human)
- 28s ribosomal protein s12, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s18c, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s10, mitochondrial (23 kDa, Protein from human)
- 28s ribosomal protein s9, mitochondrial (45 kDa, Protein from human)
- 28s ribosomal protein s33, mitochondrial (12 kDa, Protein from human)
- 28s ribosomal protein s18b, mitochondrial (29 kDa, Protein from human)
- Methyltransferase-like protein 17, mitochondrial (50 kDa, Protein from human)
- Putative ribosome-binding factor a, mitochondrial (38 kDa, Protein from human)
- 28s ribosomal protein s28, mitochondrial (20 kDa, Protein from human)
- S-adenosylmethionine (398 Da, Ligand)
- 28s ribosomal protein s24, mitochondrial (19 kDa, Protein from human)
- 28s ribosomal protein s29, mitochondrial (45 kDa, Protein from human)
- Iron/sulfur cluster (351 Da, Ligand)
- 28s ribosomal protein s17, mitochondrial (14 kDa, Protein from human)
- Dimethyladenosine transferase 1, mitochondrial (39 kDa, Protein from human)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- Aurora kinase a-interacting protein (22 kDa, Protein from human)
- Human mitochondrial small subunit assembly intermediate, state c* (1 MDa, Complex from Homo sapiens)
- 28s ribosomal protein s35, mitochondrial (36 kDa, Protein from human)
- 28s ribosomal protein s21, mitochondrial (10 kDa, Protein from human)
- 28s ribosomal protein s16, mitochondrial (15 kDa, Protein from human)
- 28s ribosomal protein s15, mitochondrial (29 kDa, Protein from human)
Yeast mitochondrial small subunit assembly intermediate (State 3)
Resolution: 2.6 Å
EM Method: Single-particle
Fitted PDBs: 8d8l
Q-score: 0.614
Harper NJ, Burnside C, Klinge S
Nature (2023) 614 pp. 175-181 [ Pubmed: 36482135 DOI: doi:10.1038/s41586-022-05621-0 ]
- 37s ribosomal protein pet123, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- Probable s-adenosyl-l-methionine-dependent rna methyltransferase rsm22, mitochondrial (72 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s23, mitochondrial (50 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s35, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- Ribosomal protein var1, mitochondrial (47 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s25, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp21, mitochondrial (20 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp1, mitochondrial (36 kDa, Protein from Saccharomyces cerevisiae)
- Mitochondrial 37s ribosomal protein s27 (12 kDa, Protein from Saccharomyces cerevisiae)
- 15s ribosomal rna (549 kDa, RNA from Saccharomyces cerevisiae)
- 37s ribosomal protein s8, mitochondrial (17 kDa, Protein from Saccharomyces cerevisiae)
- 3-hydroxyisobutyryl-coa hydrolase, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s16, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s5, mitochondrial (34 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein rsm18, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s26, mitochondrial (30 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp10, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s19, mitochondrial (10 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein nam9, mitochondrial (56 kDa, Protein from Saccharomyces cerevisiae)
- Protein fyv4, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- Water (18 Da, Ligand)
- 37s ribosomal protein mrp4, mitochondrial (44 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s18, mitochondrial (24 kDa, Protein from Saccharomyces cerevisiae)
- Unknown protein sequence (8 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s17, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- Yeast mitochondrial small subunit assembly intermediate (state 3) (1 MDa, Complex from Saccharomyces cerevisiae)
- 37s ribosomal protein s28, mitochondrial (33 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein sws2, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp51, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp13, mitochondrial (39 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s12, mitochondrial (16 kDa, Protein from Saccharomyces cerevisiae)
- Iron/sulfur cluster (351 Da, Ligand)
- 37s ribosomal protein s10, mitochondrial (23 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp17, mitochondrial (15 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein mrp2, mitochondrial (13 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s9, mitochondrial (31 kDa, Protein from Saccharomyces cerevisiae)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- Magnesium ion (24 Da, Ligand)
- 37s ribosomal protein s7, mitochondrial (27 kDa, Protein from Saccharomyces cerevisiae)
- 37s ribosomal protein s24, mitochondrial (37 kDa, Protein from Saccharomyces cerevisiae)