PoxtA-EQ2 antibiotic resistance ABCF bound to E. faecalis 70S ribosome, state II
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 7p7s
Q-score: 0.526
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- Are-abc-f family resistance factor poxta (67 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- Trna-fmet (25 kDa, RNA from Enterococcus faecalis)
- 70s ribosome (Complex from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
- Mrna (6 kDa, RNA from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l1 (24 kDa, Protein from Enterococcus faecalis)
- 23s rrna (944 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- Are-abc-f family resistance factor poxta (Complex from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
- Spectinomycin (332 Da, Ligand)
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
- 16s rrna (504 kDa, RNA from Enterococcus faecalis)
- Complex of poxta-eq2 bound to the 70s ribosome from e. faecalis (initiation complex), state ii. (Complex)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
E. faecalis 70S ribosome with P-tRNA, state IV
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7p7u
Q-score: 0.526
Crowe-McAuliffe C, Murina V, Turnbull KJ, Huch S, Kasari M, Takada H, Nersisyan L, Sundsfjord A, Hegstad K, Atkinson GC, Pelechano V, Wilson DN, Hauryliuk V
Nat Commun (2022) 13 pp. 1860-1860 [ Pubmed: 35387982 DOI: doi:10.1038/s41467-022-29274-9 ]
- Potassium ion (39 Da, Ligand)
- 50s ribosomal protein l28 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l18 (12 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l20 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l24 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l3 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l5 (20 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l23 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s3 (24 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s6 (11 kDa, Protein from Enterococcus faecalis)
- 1,4-diaminobutane (88 Da, Ligand)
- 50s ribosomal protein l17 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l27 (10 kDa, Protein from Enterococcus faecalis)
- Mrna (6 kDa, RNA from Enterococcus faecalis)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s19 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s5 (17 kDa, Protein from Enterococcus faecalis)
- 23s rrna (944 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s10 (11 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s12 (15 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s9 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l6 (19 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s17 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s4 (23 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s16 (10 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s7 (17 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s15 (10 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l21 (11 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l29 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l2 (30 kDa, Protein from Enterococcus faecalis)
- 5s rrna (37 kDa, RNA from Enterococcus faecalis)
- 30s ribosomal protein s18 (9 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s8 (14 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l15 (15 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l33 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l13 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l30 (6 kDa, Protein from Enterococcus faecalis)
- 70s ribosome from e. faecalis with p-trna (initiation complex), state iv. (Complex from Enterococcus faecalis)
- 50s ribosomal protein l14 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l4 (22 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l22 (12 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s20 (8 kDa, Protein from Enterococcus faecalis)
- Magnesium ion (24 Da, Ligand)
- 30s ribosomal protein s11 (13 kDa, Protein from Enterococcus faecalis)
- Spectinomycin (332 Da, Ligand)
- 30s ribosomal protein s2 (29 kDa, Protein from Enterococcus faecalis)
- Trna-fmet (24 kDa, RNA from Enterococcus faecalis)
- 16s rrna (504 kDa, RNA from Enterococcus faecalis)
- 50s ribosomal protein l32 (6 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l36 (4 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l34 (5 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l16 (16 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l19 (13 kDa, Protein from Enterococcus faecalis)
- 30s ribosomal protein s13 (13 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l35 (7 kDa, Protein from Enterococcus faecalis)
- 50s ribosomal protein l31 type b (10 kDa, Protein from Enterococcus faecalis)
VgaA-LC, an antibiotic resistance ABCF, in complex with 70S ribosome from Staphylococcus aureus
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7nhl
Q-score: 0.476
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ DOI: doi:10.1038/s41467-021-23753-1 Pubmed: 34117249 ]
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Vgaa-lc in complex with 70s ribosome, mrna, and distorted p-trna from staphylococcus aureus (2 MDa, Complex)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 70s ribosome (Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Rna (5'-r(p*gp*gp*ap*gp*gp*up*ap*up*g)-3') (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- P-trna fmet (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s rrna (501 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Vgaa-lc (Complex from Staphylococcus haemolyticus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Lincosamide-streptogramin a resistance protein (63 kDa, Protein from Staphylococcus haemolyticus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
70S ribosome from Staphylococcus aureus
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 7nhm
Q-score: 0.494
Crowe-McAuliffe C, Murina V, Turnbull KJ, Kasari M, Mohamad M, Polte C, Takada H, Vaitkevicius K, Johansson J, Ignatova Z, Atkinson GC, O'Neill AJ, Hauryliuk V, Wilson DN
Nat Commun (2021) 12 pp. 3577-3577 [ DOI: doi:10.1038/s41467-021-23753-1 Pubmed: 34117249 ]
- Potassium ion (39 Da, Ligand)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Rna (5'-r(p*gp*gp*ap*gp*gp*up*np*np*np*np*np*np*ap*up*g)-3') (4 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s2 (29 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Zinc ion (65 Da, Ligand)
- 50s ribosomal protein l32 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l2 (30 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 5s rrna (36 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s19 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s18 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s3 (24 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l29 (8 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l16 (16 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l33 2 (5 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l25 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l27 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s4 (23 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l31 type b (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s13 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s5 (17 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s11 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- N-formylmethionine (177 Da, Ligand)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s17 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 23s rrna (946 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l5 (20 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 16s rrna (501 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s16 (10 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s20 (9 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 70s ribosome from staphylococcus aureus (2 MDa, Complex from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus subsp. aureus NCTC 8325)
- Trna-fmet (24 kDa, RNA from Staphylococcus aureus subsp. aureus NCTC 8325)
Saccharomyces cerevisiae 80S ribosome bound with ABCF protein New1
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 6s47
Q-score: 0.472
Kasari V, Pochopien AA, Margus T, Murina V, Turnbull K, Zhou Y, Nissan T, Graf M, Novacek J, Atkinson GC, Johansson MJO, Wilson DN, Hauryliuk V
Nucleic Acids Res (2019) 47 pp. 8807-8820 [ Pubmed: 31299085 DOI: doi:10.1093/nar/gkz600 ]
- 60s ribosomal protein l31-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l42-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l7-a (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l43-a (9 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s3 (26 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s26-b (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l9-a (21 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l30 (11 kDa, Protein from Baker's yeast)
- Ubiquitin-40s ribosomal protein s31 (17 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l17-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l10 (25 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l11-b (19 kDa, Protein from Baker's yeast)
- 18s rrna (1707-mer) (549 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l33-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l36-a (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l15-a (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l4-a (39 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l23-a (14 kDa, Protein from Baker's yeast)
- 28s ribosomal rna (1 MDa, RNA from Saccharomyces cerevisiae)
- New1-80s complex (Complex)
- 40s ribosomal protein s7-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s13 (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l18-a (20 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l22-a (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s23-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l21-a (18 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s10-a (12 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l5 (33 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s12 (15 kDa, Protein from Baker's yeast)
- Ubiquitin-60s ribosomal protein l40 (14 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l16-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s25-a (11 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l41-b (3 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l3 (43 kDa, Protein from Saccharomyces cerevisiae)
- New1 (Complex from Saccharomyces cerevisiae)
- 40s ribosomal protein s17-a (15 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l2-a (27 kDa, Protein from Baker's yeast)
- 5s ribosomal rna (38 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l19-a (21 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s14-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s28-a (7 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l25 (15 kDa, Protein from Saccharomyces cerevisiae)
- 60s ribosomal protein l20-a (20 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s1-a (28 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s24-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s4-a (29 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l14-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s15 (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s27-a (8 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s19-a (15 kDa, Protein from Baker's yeast)
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 60s ribosomal protein l24-a (17 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s0-a (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l27-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s21-a (9 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l32 (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s16-a (15 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s8-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l39 (6 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s29-a (6 kDa, Protein from Baker's yeast)
- Rps5p (24 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l35-a (13 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s9-a (22 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s18-a (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l28 (16 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l34-a (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l26-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s22-a (14 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s2 (27 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l38 (8 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s30-a (7 kDa, Protein from Baker's yeast)
- [nu+] prion formation protein 1 (109 kDa, Protein from Saccharomyces cerevisiae)
- 5.8s ribosomal rna (50 kDa, RNA from Saccharomyces cerevisiae)
- 60s ribosomal protein l37-a (9 kDa, Protein from Baker's yeast)
- Guanine nucleotide-binding protein subunit beta-like protein (34 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s11-a (17 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l6-a (19 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l13-a (22 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l8-a (25 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s6-a (27 kDa, Protein from Baker's yeast)
- 40s ribosomal protein s20 (13 kDa, Protein from Baker's yeast)
- 60s ribosomal protein l29 (6 kDa, Protein from Baker's yeast)
- 80s ribosome (Complex from Saccharomyces cerevisiae)
Resolution: 3.1 Å
EM Method: Single-particle
Fitted PDBs: 6ha1
Q-score: 0.48
Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN
PNAS (2018) 115 pp. 8978-8983 [ DOI: doi:10.1073/pnas.1808535115 Pubmed: 30126986 ]
- 5s ribosomal rna (36 kDa, RNA from Bacillus subtilis (strain 168))
- 16s ribosomal rna (503 kDa, RNA from Bacillus subtilis (strain 168))
- 30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
- Ermd stalling peptide (Complex from Bacillus subtilis (strain 168))
- Trna (Complex from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
- 70s ribosome with p-trna translating the ermd stalling peptide and complexed with telithromycin (Complex)
- 30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
- 23s ribosomal rna (949 kDa, RNA from Bacillus subtilis (strain 168))
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
- P-trna (28 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
- Telithromycin (812 Da, Ligand)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
- 70s ribosome (Complex from Bacillus subtilis (strain 168))
- Mrna (872 Da, RNA from Bacillus subtilis (strain 168))
- 50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
Cryo-EM structure of the ABCF protein VmlR bound to the Bacillus subtilis ribosome
Resolution: 3.5 Å
EM Method: Single-particle
Fitted PDBs: 6ha8
Q-score: 0.389
Crowe-McAuliffe C, Graf M, Huter P, Takada H, Abdelshahid M, Novacek J, Murina V, Atkinson GC, Hauryliuk V, Wilson DN
PNAS (2018) 115 pp. 8978-8983 [ DOI: doi:10.1073/pnas.1808535115 Pubmed: 30126986 ]
- 50s ribosomal protein l1 (25 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s6 (11 kDa, Protein from Bacillus subtilis (strain 168))
- 16s rrna (503 kDa, RNA from Bacillus subtilis (strain 168))
- 50s ribosomal protein l17 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s12 (15 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l32 (6 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s17 (10 kDa, Protein from Bacillus subtilis (strain 168))
- Ribosome (Complex from Bacillus subtilis subsp. subtilis str. 168)
- 30s ribosomal protein s7 (17 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l6 (19 kDa, Protein from Bacillus subtilis (strain 168))
- Trna (Complex from Escherichia coli)
- Nucleotide-binding protein expz (Complex from Bacillus subtilis subsp. subtilis str. 168)
- 50s ribosomal protein l2 (30 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l4 (22 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l14 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l30 (6 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s10 (11 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l16 (16 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l23 (10 kDa, Protein from Bacillus subtilis (strain 168))
- Complex of translating 70s ribosome with abcf antibiotic resistance protein vmlr (Complex)
- 50s ribosomal protein l22 (12 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s19 (10 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l35 (7 kDa, Protein from Bacillus subtilis (strain 168))
- 23s rrna (949 kDa, RNA from Bacillus subtilis (strain 168))
- Adenosine-5'-triphosphate (507 Da, Ligand)
- 30s ribosomal protein s5 (17 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l15 (15 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s2 (28 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s13 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s16 (10 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s3 (24 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s15 (10 kDa, Protein from Bacillus subtilis (strain 168))
- P-trna(leu) (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l24 (11 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s4 (22 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s20 (9 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l29 (7 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l13 (16 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l28 (6 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l18 (12 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l20 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s11 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l34 (5 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l31 (7 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l19 (13 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l27 (10 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s9 (14 kDa, Protein from Bacillus subtilis (strain 168))
- 5s rrna (36 kDa, RNA from Bacillus subtilis (strain 168))
- Mrna (872 Da, RNA from Bacillus subtilis subsp. subtilis str. 168)
- Telithromycin (812 Da, Ligand)
- 50s ribosomal protein l36 (4 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l33 1 (5 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s18 (8 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l5 (20 kDa, Protein from Bacillus subtilis (strain 168))
- Nucleotide-binding protein expz (60 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l3 (22 kDa, Protein from Bacillus subtilis (strain 168))
- 50s ribosomal protein l21 (11 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s8 (14 kDa, Protein from Bacillus subtilis (strain 168))
- 30s ribosomal protein s14 (7 kDa, Protein from Bacillus subtilis (strain 168))