Cryo-EM structure of the 70S ribosome from Mycobacterium tuberculosis bound with Capreomycin
Resolution: 4.0 Å
EM Method: Single-particle
Fitted PDBs: 5v93
Q-score: 0.321
Yang K, Chang JY, Cui Z, Li X, Meng R, Duan L, Thongchol J, Jakana J, Huwe CM, Sacchettini JC, Zhang J
Nucleic Acids Res (2017) 45 pp. 10884-10894 [ DOI: doi:10.1093/nar/gkx785 Pubmed: 28977617 ]
- 50s ribosomal protein l27 (8 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium tuberculosis)
- Capreomycin (670 Da, Protein from Streptomyces puniceus)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s17 (14 kDa, Protein from Mycobacterium tuberculosis)
- Mitochondrial domain of uncharacterised function (duf1713) (4 kDa, Protein from Mycobacterium tuberculosis)
- 5s rrna (37 kDa, RNA from Mycobacterium tuberculosis)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s16 (17 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s18 (9 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l19 (13 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l22 (20 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l17 (19 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l9 (16 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium tuberculosis)
- Ribosome from human pathogen mycobacterium tuberculosis (Complex from Mycobacterium tuberculosis)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s5 (22 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l33 (6 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l4 (23 kDa, Protein from Mycobacterium tuberculosis)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium tuberculosis)
- 16s rrna (498 kDa, RNA from Mycobacterium tuberculosis)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium tuberculosis)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium tuberculosis)
- Lsu ribosomal protein l21p (11 kDa, Protein from Mycobacterium tuberculosis)
- 23s rrna (1 MDa, RNA from Mycobacterium tuberculosis)
Resolution: 5.8 Å
EM Method: Single-particle
Fitted PDBs: 5uz4
Q-score: 0.232
PNAS (2017) 114 pp. E3396-E3403 [ Pubmed: 28396444 DOI: doi:10.1073/pnas.1618016114 ]
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli)
- 3'-o-(n-methylanthraniloyl)-beta:gamma-imidoguanosine-5'-triphosphate (655 Da, Ligand)
- 16s ribosomal rna (494 kDa, RNA from Escherichia coli)
- 30s ribosomal protein s13 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s3 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s19 (10 kDa, Protein from Escherichia coli)
- Zinc ion (65 Da, Ligand)
- Structure of the 30s subunit in complex with yjeq gtpase (Complex from Escherichia coli)
- 30s ribosomal protein s18 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s7 (20 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli)
- Small ribosomal subunit biogenesis gtpase rsga (37 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s11 (13 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s2 (26 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s5 (17 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s6 (15 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli)
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli)