Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HPF (structure I-A)
Resolution: 3.0 Å
EM Method: Single-particle
Fitted PDBs: 8uu4
Q-score: 0.508
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs6 (11 kDa, Protein from Listeria innocua)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl31b (9 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul16 (16 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul18 (13 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl17 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us17 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl27 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us7 (17 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl36 (4 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs16 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Listeria innocua)
- 5s ribosomal rna (37 kDa, RNA from Listeria innocua)
- 16s ribosomal rna (501 kDa, RNA from Listeria innocua)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Listeria innocua)
- 23s ribosomal rna (951 kDa, RNA from Listeria innocua)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Listeria innocua)
- Listeria innocua 70s ribosome bound to hpf (2 MDa, Complex from Listeria innocua)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us14 (7 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl28 (7 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Listeria innocua)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Listeria innocua)
- Ribosome hibernation promoting factor (21 kDa, Protein from Listeria innocua)
Resolution: 3.2 Å
EM Method: Single-particle
Fitted PDBs: 8uu7
Q-score: 0.512
Nucleic Acids Res (2024) 52 pp. 4053-4066 [ Pubmed: 38407413 DOI: doi:10.1093/nar/gkae128 ]
- Large ribosomal subunit protein ul24 (11 kDa, Protein from Listeria innocua)
- Listeria innocua 70s ribosome in complex with hpf, hflxr and e-site trna (2 MDa, Complex from Listeria innocua)
- Large ribosomal subunit protein ul3 (22 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us15 (10 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us10 (11 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl33 (6 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs6 (11 kDa, Protein from Listeria innocua)
- Water (18 Da, Ligand)
- Zinc ion (65 Da, Ligand)
- Small ribosomal subunit protein us13 (13 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us5 (17 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs20 (9 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us19 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl20 (13 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us2 (28 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl31b (9 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul16 (16 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul14 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul18 (13 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us4 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl17 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl21 (11 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us3 (24 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul23 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul30 (6 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein bs18 (9 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us17 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl19 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl27 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul4 (22 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul2 (30 kDa, Protein from Listeria innocua)
- Gtpase hflx (47 kDa, Protein from Listeria monocytogenes EGD-e)
- Small ribosomal subunit protein us11 (13 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl34 (5 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul22 (12 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us7 (17 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul15 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl36 (4 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul5 (20 kDa, Protein from Listeria innocua)
- E-site phenylalanine trna (24 kDa, RNA from Escherichia coli)
- Small ribosomal subunit protein bs16 (10 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul13 (16 kDa, Protein from Listeria innocua)
- 5s ribosomal rna (37 kDa, RNA from Listeria innocua)
- 16s ribosomal rna (501 kDa, RNA from Listeria innocua)
- Large ribosomal subunit protein bl35 (7 kDa, Protein from Listeria innocua)
- 23s ribosomal rna (951 kDa, RNA from Listeria innocua)
- Small ribosomal subunit protein us12 (15 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul6 (19 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein ul29 (7 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl32 (6 kDa, Protein from Listeria innocua)
- Small ribosomal subunit protein us14 (7 kDa, Protein from Listeria innocua)
- Large ribosomal subunit protein bl28 (7 kDa, Protein from Listeria innocua)
- Phosphomethylphosphonic acid guanylate ester (521 Da, Ligand)
- Small ribosomal subunit protein us8 (14 kDa, Protein from Listeria innocua)
- Magnesium ion (24 Da, Ligand)
- Small ribosomal subunit protein us9 (14 kDa, Protein from Listeria innocua)
- Ribosome hibernation promoting factor (21 kDa, Protein from Listeria innocua)
Cryo-EM structure of an Escherichia coli 70S ribosome in complex with antibiotic TetracenomycinX
Resolution: 2.86 Å
EM Method: Single-particle
Fitted PDBs: 6y69
Q-score: 0.486
Osterman IA, Wieland M, Maviza TP, Lashkevich KA, Lukianov DA, Komarova ES, Zakalyukina YV, Buschauer R, Shiriaev DI, Leyn SA, Zlamal JE, Biryukov MV, Skvortsov DA, Tashlitsky VN, Polshakov VI, Cheng J, Polikanov YS, Bogdanov AA, Osterman AL, Dmitriev SE, Beckmann R, Dontsova OA, Wilson DN, Sergiev PV
Nat Chem Biol (2020) 16 pp. 1071-1077 [ DOI: doi:10.1038/s41589-020-0578-x Pubmed: 32601485 ]
- 50s ribosomal protein l3 (22 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l9 (8 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l17 (13 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l19 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s11 (12 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l27 (8 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l6 (18 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l32 (6 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l23 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s4 (23 kDa, Protein from Escherichia coli (strain K12))
- Ribosome hibernation promoting factor (10 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l34 (5 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s18 (7 kDa, Protein from Escherichia coli (strain K12))
- Cryo-em structure of the antibiotic tetracenomycinx bound to the escherichia coli 70s ribosome (2 MDa, Complex from Escherichia coli K-12)
- 50s ribosomal protein l13 (16 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s12 (13 kDa, Protein from Escherichia coli (strain K12))
- 23s ribosomal rna (941 kDa, RNA from Escherichia coli (strain K12))
- 50s ribosomal protein l14 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s19 (9 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s7 (17 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s9 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l22 (12 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s10 (11 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l31 (7 kDa, Protein from Escherichia coli (strain K12))
- 5s ribosomal rna (38 kDa, RNA from Escherichia coli (strain K12))
- 50s ribosomal protein l15 (14 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l35 (7 kDa, Protein from Escherichia coli (strain K12))
- E-site trna (24 kDa, RNA from Escherichia coli (strain K12))
- Magnesium ion (24 Da, Ligand)
- 50s ribosomal protein l24 (11 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l33 (5 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l5 (20 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l16 (15 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l21 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s14 (11 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l30 (6 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s21 (7 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s5 (16 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l4 (22 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l29 (7 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l36 (4 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s15 (10 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l28 (8 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s13 (12 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l18 (12 kDa, Protein from Escherichia coli (strain K12))
- Tetracenomycin x (486 Da, Ligand)
- 50s ribosomal protein l2 (29 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s2 (24 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l25 (10 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s8 (14 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s16 (9 kDa, Protein from Escherichia coli (strain K12))
- 16s ribosomal rna (498 kDa, RNA from Escherichia coli (strain K12))
- 30s ribosomal protein s17 (9 kDa, Protein from Escherichia coli (strain K12))
- 50s ribosomal protein l20 (13 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s6 (11 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s3 (23 kDa, Protein from Escherichia coli (strain K12))
- 30s ribosomal protein s20 (9 kDa, Protein from Escherichia coli (strain K12))
Resolution: 2.425 Å
EM Method: Single-particle
Fitted PDBs: 6s0x
Q-score: 0.395
Halfon Y, Matzov D, Eyal Z, Bashan A, Zimmerman E, Kjeldgaard J, Ingmer H, Yonath A
Sci Rep (2019) 9 pp. 11460-11460 [ DOI: doi:10.1038/s41598-019-48019-1 Pubmed: 31391518 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l5 (19 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s2 (25 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l18 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s3 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l28 (5 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
- 23s ribosomal rna (940 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
- Erythromycin a (733 Da, Ligand)
- 16s ribosomal rna (498 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l32 (5 kDa, Protein from Staphylococcus aureus)
- Ribosome hibernation promoting factor (18 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s13 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s16 (9 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
- Erythromycin resistant staphylococcus aureus 70s ribosome (delta r88 a89 ul22) in complex with erythromycin. (Complex from Staphylococcus aureus)
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
Erythromycin Resistant Staphylococcus aureus 70S ribosome (delta R88 A89 uL22).
Halfon Y, Matzov D, Eyal Z, Bashan A, Zimmerman E, Kjeldgaard J, Ingmer H, Yonath A
Sci Rep (2019) 9 pp. 11460-11460 [ DOI: doi:10.1038/s41598-019-48019-1 Pubmed: 31391518 ]
- 50s ribosomal protein l35 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l27 (8 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s6 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l34 (5 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s2 (25 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s20 (8 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l16 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l2 (29 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s7 (17 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l5 (19 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l22 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l30 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s14 type z (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l28 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l25 (10 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l19 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s19 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s3 (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s12 (15 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l3 (23 kDa, Protein from Staphylococcus aureus)
- 23s ribosomal rna (940 kDa, RNA from Staphylococcus aureus)
- 30s ribosomal protein s15 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s18 (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l36 (4 kDa, Protein from Staphylococcus aureus)
- 16s ribosomal rna (498 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l32 (5 kDa, Protein from Staphylococcus aureus)
- Ribosome hibernation promoting factor (18 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s8 (14 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l20 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l23 (10 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s13 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l17 (13 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l13 (16 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l33 (5 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l18 (13 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s16 (9 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l6 (19 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l29 (7 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l4 (22 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l15 (15 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s10 (11 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s17 (9 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s21 (6 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s4 (22 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s9 (14 kDa, Protein from Staphylococcus aureus)
- 30s ribosomal protein s11 (12 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l14 (13 kDa, Protein from Staphylococcus aureus)
- Erythromycin resistant staphylococcus aureus 70s ribosome (delta r88 a89 ul22) in complex with erythromycin. (Complex from Staphylococcus aureus)
- 30s ribosomal protein s5 (16 kDa, Protein from Staphylococcus aureus)
- 5s ribosomal rna (36 kDa, RNA from Staphylococcus aureus)
- 50s ribosomal protein l31 type b (6 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l21 (11 kDa, Protein from Staphylococcus aureus)
- 50s ribosomal protein l24 (11 kDa, Protein from Staphylococcus aureus)
T. thermophilus hibernating 70S ribosome
Resolution: 3.28 Å
EM Method: Single-particle
Fitted PDBs: 6gzq
Q-score: 0.464
Flygaard RK, Boegholm N, Yusupov M, Jenner LB
Nat Commun (2018) 9 pp. 4179-4179 [ DOI: doi:10.1038/s41467-018-06724-x Pubmed: 30301898 ]
- 50s ribosomal protein l33 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s11 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l20 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l2 (29 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s7 (17 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l15 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l24 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l16 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s20 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l30 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l13 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l22 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 23s ribosomal rna (947 kDa, RNA from Thermus thermophilus HB8)
- 50s ribosomal protein l36 (4 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l21 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l35 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Thermus thermophilus 70s hibernating ribosome from 100s ribosome dimer (2 MDa, Complex)
- Thermus thermophilus 70s hibernating ribosome from 100s ribosome dimer (Complex from Thermus thermophilus HB8)
- 50s ribosomal protein l25 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l5 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s5 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l17 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l27 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l32 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l28 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 5s ribosomal rna (39 kDa, RNA from Thermus thermophilus HB8)
- 30s ribosomal protein s2 (27 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus HB8)
- 30s ribosomal protein s13 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l29 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l19 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l31 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l34 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s12 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (Complex from Thermus thermophilus HB8)
- 50s ribosomal protein l4 (23 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s18 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s17 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l14 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s16 (9 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 16s ribosomal rna (489 kDa, RNA from Thermus thermophilus HB8)
- 50s ribosomal protein l6 (18 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l9 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l23 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l18 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s19 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
T. thermophilus hibernating 100S ribosome (ice)
Resolution: 4.57 Å
EM Method: Single-particle
Fitted PDBs: 6gzx
Q-score: 0.282
Flygaard RK, Boegholm N, Yusupov M, Jenner LB
Nat Commun (2018) 9 pp. 4179-4179 [ Pubmed: 30301898 DOI: doi:10.1038/s41467-018-06724-x ]
- 50s ribosomal protein l30 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l31 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l25 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 16s ribosomal rna (489 kDa, RNA from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l2 (29 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s5 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l15 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (Complex from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l32 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s20 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l21 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l17 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l5 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l18 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 23s ribosomal rna (947 kDa, RNA from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l16 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l34 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l23 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l35 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s18 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l14 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l27 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l4 (23 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s13 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s11 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l9 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Thermus thermophilus 100s hibernating ribosome (ice) (2 MDa, Complex)
- 30s ribosomal protein s12 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l28 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l36 (4 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l24 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s7 (17 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l6 (18 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s16 (9 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l22 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s17 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s19 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l13 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l29 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l33 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s2 (27 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome (Complex from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l19 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 5s ribosomal rna (39 kDa, RNA from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l20 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
T. thermophilus hibernating 100S ribosome (amc)
Resolution: 4.13 Å
EM Method: Single-particle
Fitted PDBs: 6gzz
Q-score: 0.317
Flygaard RK, Boegholm N, Yusupov M, Jenner LB
Nat Commun (2018) 9 pp. 4179-4179 [ Pubmed: 30301898 DOI: doi:10.1038/s41467-018-06724-x ]
- 30s ribosomal protein s19 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l22 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein thx (3 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l35 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 16s ribosomal rna (489 kDa, RNA from Thermus thermophilus HB8)
- Ribosome hibernation promoting factor (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l27 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l15 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l19 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l23 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l4 (23 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s8 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Thermus thermophilus hibernating 100s ribosome (amc) (2 MDa, Complex)
- 30s ribosomal protein s9 (14 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l30 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l34 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l2 (29 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 100s ribosome (Complex from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s10 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l28 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s6 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s11 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s13 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l18 (12 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l14 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l20 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s7 (17 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l6 (18 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- Ribosome hibernation promoting factor (Complex from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l29 (8 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l16 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s16 (9 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l9 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s5 (16 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s17 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s12 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s18 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l36 (4 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l31 (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 23s ribosomal rna (947 kDa, RNA from Thermus thermophilus HB8)
- 50s ribosomal protein l17 (13 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s3 (22 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s14 type z (7 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l25 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s15 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l21 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l24 (11 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l13 (15 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l33 (5 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s2 (27 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s4 (24 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 50s ribosomal protein l5 (20 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 5s ribosomal rna (39 kDa, RNA from Thermus thermophilus HB8)
- 50s ribosomal protein l32 (6 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
- 30s ribosomal protein s20 (10 kDa, Protein from Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579))
M. smegmatis hibernating state 70S ribosome structure
Resolution: 3.4 Å
EM Method: Single-particle
Fitted PDBs: 5zep
Q-score: 0.275
Mishra S, Ahmed T, Tyagi A, Shi J, Bhushan S
Sci Rep (2018) 8 pp. 13587-13587 [ Pubmed: 30206241 DOI: doi:10.1038/s41598-018-31850-3 ]
- 5s rrna (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s19 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l27 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 23s rrna (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s3 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l23 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l11 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s16 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l29 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Uncharacterized protein (2 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s17 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l17 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 16s rrna (495 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 70s ribosome structure from m.smegmatis (Complex from Mycobacterium smegmatis str. MC2 155)
- E-trnafmet (24 kDa, RNA from Escherichia coli)
- 50s ribosomal protein l31 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s14 type z (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Translating-state 70s ribosome structure from m.smegmatis (2 MDa, Complex)
- Ribosome hibernation promoting factor (26 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l28 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Conserved domain protein (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- Bs1 (40 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- E-trnafmet (Complex from Escherichia coli)
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l25 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l30 (7 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l21 (11 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l22 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s11 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s18 2 (9 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s9 (16 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l5 (21 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s13 (14 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l3 (23 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l33 1 (6 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l10 (18 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
Cryo-EM Structure of Mycobacterium smegmatis 70S C(minus) ribosome 70S-MPY complex
Resolution: 3.46 Å
EM Method: Single-particle
Fitted PDBs: 6dzi
Q-score: 0.438
Li Y, Sharma MR, Koripella RK, Yang Y, Kaushal PS, Lin Q, Wade JT, Gray TA, Derbyshire KM, Agrawal RK, Ojha AK
PNAS (2018) 115 pp. 8191-8196 [ Pubmed: 30038002 DOI: doi:10.1073/pnas.1804555115 ]
- 50s ribosomal protein l9 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s15 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s7 (17 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Ribosome hibernation promoting factor (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s9 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s20 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l25 (20 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l27 (8 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s13 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s14 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l10 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l21 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Conserved protein domain (4 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l5 (20 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 23 s rrna (3119-mer) (1 MDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l4 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s6 (10 kDa, Protein from Mycobacterium smegmatis)
- 50s ribosomal protein l14 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s12 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l11 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l28 (8 kDa, Protein from Mycobacterium smegmatis str. MC2 155)
- 50s ribosomal protein l30 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l19 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l13 (16 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s8 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s3 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l36 (4 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l31 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- Uncharacterized protein (2 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l17 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l18 (13 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 70s-mpy complex (Complex from Mycobacterium smegmatis str. MC2 155)
- 16s rrna (490 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s16 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s4 (23 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l2 (30 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l6 (19 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s17 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l3 (22 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l15 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l22 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l33 2 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l16 (15 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l34 (5 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l23 (10 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l29 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s11 (12 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l24 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s5 (18 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s18 1 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l32 (6 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 5s rna (118-mer) (38 kDa, RNA from Mycobacterium smegmatis str. MC2 155)
- 30s ribosomal protein s19 (9 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l20 (14 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s10 (11 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 50s ribosomal protein l35 (7 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))
- 30s ribosomal protein s2 (25 kDa, Protein from Mycobacterium smegmatis (strain ATCC 700084 / mc(2)155))